mRNA_E-fasciculatus_F_contig132.2411.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig132.2411.1
Unique NamemRNA_E-fasciculatus_F_contig132.2411.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 7.200e-60
Identity = 90/146 (61.64%), Postives = 112/146 (76.71%), Query Frame = 1
Query:   10 QVRALLEHVDVQGGVLDCCGAGQDAVSTVLTARGLRVATNDLSPSLVADTHLDASTDAFAEAYLEDTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPV*SRGRWLKENPPDRIVMLPRATYRGRKCSSTEAWFVW 447
            +V ALL +V + GGVLD CG+  DA+  VL A  L V+TND +P L ADTHLDA+++ F   +  + +RPDW+VTSPPY NAF IL +AL V RVGVAFKLRL+FLEP  +RG+WLK+NPP  +V+LPRATY GR CSSTEAWF+W
Sbjct:   14 KVDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIW 159          
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.600e-26
Identity = 59/131 (45.04%), Postives = 76/131 (58.02%), Query Frame = 1
Query:   64 CGAGQDAVSTVLTARGLRVATNDLSPSLVADTHLDASTDAFAEAYLE--DTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPV*SRGRWLKENPPDRIVMLPRATY-RGRKCSSTEAWFVW 447
            CG   DAV+T L +    + TND+S    ADT+L+AS + F E +L     +RP+WVVTSPPY  A   +K A+ +   GVAFK+ + FLEP   RG WL+ NPP   V L RA Y R     + E W VW
Sbjct:    2 CGGPTDAVATRLRST-CEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVW 131          
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.170e-25
Identity = 64/133 (48.12%), Postives = 81/133 (60.90%), Query Frame = 1
Query:   13 VRALLEHVDVQGGVLDCCGAGQDAVSTVLTARGLRVATNDLSP-----SLVADTHLDASTDAFAEAYL--EDTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPV*SRGRWLKENPPDRIVML 390
            V ALL  V+++G VLD CG   DA++T L A   +V TND+S       L  DT+LDAS  +FA  +L  +  +RPDWV+TSPPYK A   +K AL +   GVA KL L+FLEP   RG WL+ NPP   V  
Sbjct:   90 VEALLGAVELEGCVLDMCGGPGDAIATRLGAT-CKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221          
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.810e-25
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 1
Query:  292 VGVAFKLRLTFLEPV*SRGRWLKENPPDRIVMLPRATYRGRKCSSTEAWFVWE 450
            +GVAFKLRLTFL P  SRGRWLK+NPPDRIVMLPRATYR R+CSSTE WFVWE
Sbjct:    1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWE 53          
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO)

HSP 1 Score: 103 bits (256), Expect = 6.220e-25
Identity = 61/148 (41.22%), Postives = 86/148 (58.11%), Query Frame = 1
Query:   13 VRALLEHVDVQGGVLDCCGAGQDAVSTVLTARGLRVATNDLSPSLVADTHLDASTDAFAEAYLEDTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPV*SRGRWLKENPPDRIVMLPRATYRG--RKCSSTEAWFVWE 450
            V  LL H+D+ G +L+ C  G  A+S  L   GL V T D     +AD   D   DA    Y +  +  DWVVT+PP+ +A  IL +A     VGVAF LRL++LEP   RG+WL E+PP ++++LPR ++ G  +  S T AW +W+
Sbjct:   26 VDTLLNHIDITGTLLEPCN-GSGAISNRLKEDGLSVITTD-----IADNPQD---DATTHQYWQRQKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPP-KLIVLPRISFTGDGKVDSCTCAWMIWK 163          
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: A0A6H5KU02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU02_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.080e-18
Identity = 46/102 (45.10%), Postives = 60/102 (58.82%), Query Frame = 1
Query:  151 ADTHLDASTDAFAEAYLE--DTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPV*SRGRWLKENPPDRIVMLPRATY-RGRKCSSTEAWFVW 447
            ADT+LDAS ++F E +L     +RP+WVVTSPPY  A   +K A+ +   GV FK+ ++ LEP   RG WL+ NPP   + L RA Y R       E W VW
Sbjct:  137 ADTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVEFKMPISCLEPCADRGGWLQTNPPSVCLFLRRAKYTRANNAKMGEFWGVW 238          
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: A0A1V5ZCZ4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5ZCZ4_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 8.080e-14
Identity = 57/152 (37.50%), Postives = 78/152 (51.32%), Query Frame = 1
Query:   37 DVQGGVLD-CCGAGQDAVSTVLTARGLRVATNDLSPSLVADTHLDASTDAFAEAYLEDTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPV*SRGRWLKENPPDRI---VMLPRATYR--------GRKCSS---TEAWFVW 447
            ++ G +L+   GAGQ  ++  L   G  + TND+ P+   D   DA TD FA  +       DWVVT+PP+  A  IL  A+   RVGVAF LRL+++EPV +R  WL       I    + PR  +R        G+K  +   T AWFVW
Sbjct:   26 EINGRILEPTAGAGQ--IARALAGNGRTIFTNDIDPNHGCDFASDA-TDPFAFCWGL-YGGIDWVVTNPPFSLAEDILANAMSYARVGVAFLLRLSYMEPVTTRAAWLNGYADKMIYQGALNPRPHFRKGEINPKTGKKYGTDNVTVAWFVW 173          
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.830e-13
Identity = 45/76 (59.21%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  165 GSITILSGGFSFSHRPLLYTGSRKVSLSLNATPTRPTRNACFKIKNAFL*GGLVTTQSGRRVSSRYASAKASVEAS 392
            G  T ++     SH PL+  GSRKVSLSLNATPTRP   A FKI  A L GGLVTT SGRR SS+  S   SV AS
Sbjct:  160 GMTTPVAEAKHLSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVVAS 235          
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: A0A6H5K2D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2D0_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 8.260e-11
Identity = 45/127 (35.43%), Postives = 62/127 (48.82%), Query Frame = 1
Query:   64 CGAGQDAVSTVLTARGLRVATNDLSPSLVADTHLDASTDAFAEAYLE--DTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPV*SRGRWLKENPPDRIVMLPRATYRGRKCSSTEAW 438
            CG   DAV+T L +    + T D+S    ADT+LDAS ++F E +L     +RP+WVVTSPPY  A   +K A+R    G+       F      R  WL  N P   V +  +T R  +  +   W
Sbjct:    2 CGGPTDAVATRLRS-ACEIRTKDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMR----GIQ---NAHFFTATLRRPGWLTANEPPVCVFV--STQRKTRMRTMRRW 118          
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Match: A0A6H5L5Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q9_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 8.700e-10
Identity = 35/78 (44.87%), Postives = 44/78 (56.41%), Query Frame = -1
Query:  145 PVRRVFL*PSPSALYRFEKSQSQLECHSHAPDPQRLFQNKKRVLVRRACHHPVRTARVL*VRLGKSIRRGVQVGIGDQ 378
            PV      P PS     +KSQ QLECH H P+PQ  FQN + VLV RA H P+R    L   + K +RRG+ + + DQ
Sbjct:  164 PVAEAKHLPLPSGFGGLKKSQPQLECHPHTPNPQSTFQNSEGVLVWRARHDPLRAPPFLAEGIHKCVRRGIHMTVCDQ 241          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig132.2411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE7.200e-6061.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSI1_ECTSI2.600e-2645.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJU4_ECTSI1.170e-2548.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6T5_9PHAE1.810e-2584.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A252D8B1_9NOSO6.220e-2541.22Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG... [more]
A0A6H5KU02_9PHAE1.080e-1845.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V5ZCZ4_9BACT8.080e-1437.50Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A6H5L6X2_9PHAE1.830e-1359.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2D0_9PHAE8.260e-1135.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5Q9_9PHAE8.700e-1044.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig132contigE-fasciculatus_F_contig132:747..1639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.9
Seed ortholog evalue5.4e-08
Seed eggNOG ortholog102129.Lepto7375DRAFT_1733
EggNOG free text desc.Specifically methylates the guanine in position
EggNOG OGs1GAGN@1117,1HHWT@1150,COG2813@1,COG2813@2
COG Functional cat.J
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size450
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig132.2411.1prot_E-fasciculatus_F_contig132.2411.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig132 858..1639 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927822.4641984-UTR-E-fasciculatus_F_contig132:746..8571622927822.4641984-UTR-E-fasciculatus_F_contig132:746..857Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig132 747..857 -
1695995709.7730136-UTR-E-fasciculatus_F_contig132:746..8571695995709.7730136-UTR-E-fasciculatus_F_contig132:746..857Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig132 747..857 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927822.474668-CDS-E-fasciculatus_F_contig132:857..10531622927822.474668-CDS-E-fasciculatus_F_contig132:857..1053Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig132 858..1053 -
1695995709.7834895-CDS-E-fasciculatus_F_contig132:857..10531695995709.7834895-CDS-E-fasciculatus_F_contig132:857..1053Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig132 858..1053 -
1622927822.4842956-CDS-E-fasciculatus_F_contig132:1496..16391622927822.4842956-CDS-E-fasciculatus_F_contig132:1496..1639Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig132 1497..1639 -
1695995709.794408-CDS-E-fasciculatus_F_contig132:1496..16391695995709.794408-CDS-E-fasciculatus_F_contig132:1496..1639Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig132 1497..1639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig132.2411.1

>prot_E-fasciculatus_F_contig132.2411.1 ID=prot_E-fasciculatus_F_contig132.2411.1|Name=mRNA_E-fasciculatus_F_contig132.2411.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=113bp
MQFQVRALLEHVDVQGGVLDCCGAGQDAVSTVLTARGLRVATNDLSPSLV
ADTHLDASTDAFAEAYLEDTRRPDWVVTSPPYKNAFFILKQALRVGRVGV
AFKLRLTFLEPV*
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mRNA from alignment at E-fasciculatus_F_contig132:747..1639-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig132.2411.1 ID=mRNA_E-fasciculatus_F_contig132.2411.1|Name=mRNA_E-fasciculatus_F_contig132.2411.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=893bp|location=Sequence derived from alignment at E-fasciculatus_F_contig132:747..1639- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAATTTCAGGTTCGAGCTCTTCTGGAACACGTGGATGTCCAAGGCGG CGTGCTAGATTGCTGTGGCGCCGGCCAGGACGCAGTCAGCACGGTGCTGA CAGCGCGCGGTCTTCGTGTTGCTACGAACGACTTAAGCCCCAGGTATGCA TATGTGCGTCTTGCGGCCTCTTTCGAAGCCACCACGCGCGGGTATGCATG CTGACTTCCTAGACTCCGAGCCCCCCACCCTGTTGGCAAGCCTACCATTG TCTTTAATAAGCACACACCACCGTTGATTTTTTTTCAGCATGGACGATGT GTTCACAACGTTTTGTTTGTTGGCAGGGTGAACGATGTGTTCCACAAAAA AAAAAAAATCCACAACACAGCGCTTCTGGCAAGTACCTGTAGCTAACGAA AACACCGAAACGGACGAAGCTTTTCGAAATCTGAAACACCATTGTATAAC AACCCCCCCCTGGTATCTCCCGTGCATGGGACACAAGTTAGTAAACATTT CCCCCCCCTCCCCCGGCGGGAATACAACTTGAGATACTTGCGTCAAACAT GATTGTGTCTCCGTGTGTTTGACCTCCCTCTTACAGTTTGGTCGCCGATA CCCACCTGGACGCCTCGACGGATGCTTTTGCCGAGGCGTACCTAGAGGAC ACGCGCCGTCCGGACTGGGTGGTGACAAGCCCGCCTTACAAGAACGCGTT TTTTATTTTGAAACAGGCGTTGCGGGTCGGGCGCGTGGGAGTGGCATTCA AGCTGAGACTGACTTTTCTCGAACCTGTATAAAGCAGAGGGCGATGGCTA AAGGAAAACCCTCCTGACAGGATTGTGATGCTCCCGCGCGCTACATACCG CGGGAGGAAGTGTAGTTCTACGGAGGCGTGGTTTGTGTGGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig132:747..1639-

>mRNA_E-fasciculatus_F_contig132.2411.1 ID=mRNA_E-fasciculatus_F_contig132.2411.1|Name=mRNA_E-fasciculatus_F_contig132.2411.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=678bp|location=Sequence derived from alignment at E-fasciculatus_F_contig132:747..1639- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAATTTCAGGTTCGAGCTCTTCTGGAACACGTGGATGTCCAAGGCGG
CGTGCTAGATTGCTGTGGCGCCGGCCAGGACGCAGTCAGCACGGTGCTGA
CAGCGCGCGGTCTTCGTGTTGCTACGAACGACTTAAGCCCCAGATGCAAT
TTCAGGTTCGAGCTCTTCTGGAACACGTGGATGTCCAAGGCGGCGTGCTA
GATTGCTGTGGCGCCGGCCAGGACGCAGTCAGCACGGTGCTGACAGCGCG
CGGTCTTCGTGTTGCTACGAACGACTTAAGCCCCAGTTTGGTCGCCGATA
CCCACCTGGACGCCTCGACGGATGCTTTTGCCGAGGCGTACCTAGAGGAC
ACGCGCCGTCCGGACTGGGTGGTGACAAGCCCGCCTTACAAGAACGCGTT
TTTTATTTTGAAACAGGCGTTGCGGGTCGGGCGCGTGGGAGTGGCATTCA
AGCTGAGACTGACTTTTCTCGAACCTGTATAATTTGGTCGCCGATACCCA
CCTGGACGCCTCGACGGATGCTTTTGCCGAGGCGTACCTAGAGGACACGC
GCCGTCCGGACTGGGTGGTGACAAGCCCGCCTTACAAGAACGCGTTTTTT
ATTTTGAAACAGGCGTTGCGGGTCGGGCGCGTGGGAGTGGCATTCAAGCT
GAGACTGACTTTTCTCGAACCTGTATAA
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