mRNA_E-fasciculatus_F_contig13181.2401.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13181.2401.1
Unique NamemRNA_E-fasciculatus_F_contig13181.2401.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13181.2401.1 vs. uniprot
Match: D7G0A0_ECTSI (Vacuolar protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI)

HSP 1 Score: 389 bits (999), Expect = 4.160e-125
Identity = 210/221 (95.02%), Postives = 210/221 (95.02%), Query Frame = 1
Query:    4 ALSELMERSVSQLLSVRREHNCTKLDVDELKHLWDITVAFIQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWAQADVTPERQAVLDRLSSGQVFRPSAPAATANGNDGKEGSGVGGGGSSSYGNGGLRLPGDPPAQPNFVGGARSGGRKGGRAERRREAGVGGASFKAVGSALLVAEMSANFLQFADHFPTIGTDILTRLGELLRV 666
            ALSELMERSVSQLLSVRREHNCTKLDVDELKHLWDITVAFIQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKW QADVTPERQAVLDRLSSGQVFRPS  AA ANG DGKEGSG GGG  S Y NGGLRLPGDPPAQPNFVGGARSGGRKGGRAERRREA VGGASFKAVGSALLVAEMSANFLQFADHFPTIGTDILTRLGELLRV
Sbjct:  632 ALSELMERSVSQLLSVRREHNCTKLDVDELKHLWDITVAFIQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWTQADVTPERQAVLDRLSSGQVFRPSVSAANANGTDGKEGSGAGGG--SGYDNGGLRLPGDPPAQPNFVGGARSGGRKGGRAERRREAVVGGASFKAVGSALLVAEMSANFLQFADHFPTIGTDILTRLGELLRV 850          
BLAST of mRNA_E-fasciculatus_F_contig13181.2401.1 vs. uniprot
Match: A0A7S2FL57_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FL57_9STRA)

HSP 1 Score: 133 bits (334), Expect = 5.380e-33
Identity = 90/224 (40.18%), Postives = 130/224 (58.04%), Query Frame = 1
Query:   13 ELMERSVSQLLSVRREHNCTKLDVDELKHLWDITVAFIQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWAQADVTPERQAVLDRLSSGQVFRPSA---PAATANGNDGKEGSGVGGGGSSSYGNGGLRLPGDPPAQPNFVGGARSGGRKGGRAERRRE---AGVGGASFKAVGSALLVAEMSANFLQFADHFPTIGTDILTRLGELLRV 666
            EL ++SV  LL +R++ + T L ++ELK +W++T  F+ ++ER+SG + Y LRST+L+QAKAF+E + E    +LV  LD+EKW QADV+P+RQ  +DRLSSGQ F P     P    N +            +++   G ++ P +   +    G    GGR       RRE   A V G+SFK V S LL+ EM    L  A HFP + TD+L R+ EL+R+
Sbjct:   38 ELAQKSVGNLLVMRKDVHTT-LTIEELKEMWNVTFEFLTAMERISGRSCYALRSTMLAQAKAFLEHKQEVQMASLVATLDSEKWTQADVSPQRQQAIDRLSSGQAFLPGTLVTPTNKPNDHXXXXXXXXDNPVAATAAAGEVKRPSETEGRAVTTGRTDRGGRS------RRELNDASVDGSSFKVVWSVLLLIEMVTAHLAIAAHFPMLATDVLQRVVELVRL 254          
BLAST of mRNA_E-fasciculatus_F_contig13181.2401.1 vs. uniprot
Match: A0A7S2S5D4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5D4_9STRA)

HSP 1 Score: 132 bits (332), Expect = 9.610e-33
Identity = 91/221 (41.18%), Postives = 124/221 (56.11%), Query Frame = 1
Query:   13 ELMERSVSQLLSVRREHNCTKLDVDELKHLWDITVAFIQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWAQADVTPERQAVLDRLSSGQVFRP-SAPAATANGNDGKEGSGVGGGGSSSYGNGGLRLPGDPPAQPNFVGGARSGGRKGGRAERRR--EAGVGGASFKAVGSALLVAEMSANFLQFADHFPTIGTDILTRLGELLRV 666
            +L ++++S LL +R+E + T L ++ELK LW  T  F+Q VE+LSG + Y LRSTLL+QAKAF+E +HEA   +LV  LD+EKWAQADV+ ERQA LDRLS+GQ F P S P                           L+               +S   K  +  +R   EA V G+ +K V S LL+ EM  + L  A HFP + TD+L R+ EL+R+
Sbjct:   52 DLAQKTISNLLVMRKEVHTT-LSLEELKELWSATFEFLQLVEKLSGRSCYGLRSTLLAQAKAFLEHKHEAQLASLVATLDSEKWAQADVSSERQAALDRLSNGQAFLPRSYPK--------------------------LQTQTSXXXXXXXXATLQSSSAKRAKGTKREVGEAMVEGSRYKVVWSVLLLMEMVMSLLATAAHFPMLATDVLQRIVELVRL 245          
BLAST of mRNA_E-fasciculatus_F_contig13181.2401.1 vs. uniprot
Match: A0A7S1TZU2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZU2_9STRA)

HSP 1 Score: 129 bits (325), Expect = 6.490e-31
Identity = 88/222 (39.64%), Postives = 118/222 (53.15%), Query Frame = 1
Query:   13 ELMERSVSQLLSVRREHNCTKLDVDELKHLWDITVAFIQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWAQADVTPERQAVLDRLSSGQVFRPSAPAATANGNDGKEGSGVGGGGSSSYGNGGLRLPGDPPAQ----PNFVGGARSGGRKGGRAERRREAGVGGASFKAVGSALLVAEMSANFLQFADHFPTIGTDILTRLGELLRV 666
            EL +RS+  L+ +R+E N   L +++LK LWD  + FI  VE+L+G  GY+LR TLLSQAK F+E + +  K +LV  LDAE+W +ADVTPERQA L+RL SG  F   A  A +                         L G P +     P    G    GRK     RR +  +GG  FK V S LL+ EMS + L     FP +  D+L RL EL+++
Sbjct:  545 ELAQRSIVSLILMRKEQNFC-LALEDLKALWDTVMRFIMQVEKLAGVTGYELRGTLLSQAKGFLEKKVQVQKASLVSTLDAERWVRADVTPERQAALERLVSGHAFLRVADLAKSE----------------------SPLAGSPVSSNAGSPTAANGDAHTGRK-----RREDVVLGGRRFKVVWSVLLLLEMSTDLLSILAIFPALVVDVLQRLLELVKL 738          
BLAST of mRNA_E-fasciculatus_F_contig13181.2401.1 vs. uniprot
Match: A0A7S4RD23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RD23_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.240e-26
Identity = 80/221 (36.20%), Postives = 115/221 (52.04%), Query Frame = 1
Query:    4 ALSELMERSVSQLLSVRREHNCTKLDVDELKHLWDITVAFIQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWAQADVTPERQAVLDRLSSGQVFRPSAPAATANGNDGKEGSGVGGGGSSSYGNGGLRLPGDPPAQPNFVGGARSGGRKGGRAERRREAGVGGASFKAVGSALLVAEMSANFLQFADHFPTIGTDILTRLGELLRV 666
            A SEL  +S+S+LL +R++ + + +  DE+K LWD ++AF   +E+ SG   Y LR TLL+QAKAFVE +HEAN  +LV  LD E+W Q DVT ERQA L RL SG+    +       GN                        G+ P          S      +  +  +A V G  +K V S LL+ EM  + +  A HF T+ T+++ ++ ELLR+
Sbjct:  418 ASSELAHKSISELLRLRKDSH-SLITFDEMKLLWDTSLAFTLQLEKYSGRKAYNLRGTLLAQAKAFVERKHEANMASLVAALDGERWTQCDVTAERQAALTRLCSGRAVLSTNKITNRRGNS----------------------TGNDPTNITTXXXXSS------KKNKMSDAEVEGKRYKVVWSCLLLVEMVMSNVACAAHFQTLATNVVGKVVELLRL 609          
BLAST of mRNA_E-fasciculatus_F_contig13181.2401.1 vs. uniprot
Match: A0A7S2XS08_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XS08_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.270e-26
Identity = 84/226 (37.17%), Postives = 125/226 (55.31%), Query Frame = 1
Query:    4 ALSELMERSVSQLLSVRREHNCTKLDVDELKHLWDITVAFIQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWAQADVTPERQAVLDRLSSGQV-----FRPSAPAATANGNDGKEGSGVGGGGSSSYGNGGLRLPGDPPAQPNFVGGARSGGRKGGRAERRREAGVGGASFKAVGSALLVAEMSANFLQFADHFPTIGTDILTRLGELLRV 666
            A +EL+ERSVS+LL +R+E + + +  +E++HLWD  ++F  S+ER SG   Y LRSTLL+QAKAFVE +HE+N   L   LD+E+W Q DV+ ERQA L RL SG+      F    P+++   N       V    +S+  NG  +  G                      ++  +A V G  +K V S LL+ EM  + +  A HF T+ T+++ ++ ELLR+
Sbjct:  597 AAAELIERSVSELLRMRKEAH-SLVTFEEMRHLWDTCLSFTLSLERASGGKAYGLRSTLLAQAKAFVERKHESNMANLAAALDSERWTQCDVSTERQASLIRLCSGRAVLSYTFGGDTPSSSTTTN-------VNNATTSTTVNGTPKKDG----------------------KKLADAEVEGIRYKVVWSCLLLVEMVMSNVACAAHFQTLATNVVGKVSELLRL 792          
BLAST of mRNA_E-fasciculatus_F_contig13181.2401.1 vs. uniprot
Match: A0A835YJU9_9STRA (Vacuolar protein sorting-associated protein 54 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.140e-26
Identity = 86/226 (38.05%), Postives = 117/226 (51.77%), Query Frame = 1
Query:    1 KALSELMERSVSQLLSVRREHNCTKLDVDELKHLWDITVAFIQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWAQADVTPERQAVLDRLSSGQVFR----PSAPAATANGNDGKEGSGVGGGGSSSYGNGGLRLPGDPPAQPNFVGGARSGGRKGGRAERRREAGVGGASFKAVGSALLVAEMSANFLQFADHFPTIGTDILTRLGELLRV 666
            +A ++L+ERS+SQL+ VRR+ + T L   +L+ L D  + F   VE L G +G KLR TLL+Q KA+VE  H+ANK  LV           DV+PERQA++D ++ G V      PS  AA+ NG                            PA        RS        +R+REA + GA +KAV S LL+ EM+ N L+ A +FP    D+L RL ELLR+
Sbjct:  596 RAAADLVERSLSQLVGVRRDLHATSLSPQQLRALCDAALEFTSKVEALCGSSGSKLRVTLLNQTKAYVECHHDANKTKLV-----------DVSPERQAMMDHITGGHVLSHALAPSHLAASMNGAS--------------------------PAAAFAPQSTRS-------KDRKREALLEGARYKAVWSTLLLVEMAYNQLRMAAYFPAAAPDVLGRLSELLRL 777          
BLAST of mRNA_E-fasciculatus_F_contig13181.2401.1 vs. uniprot
Match: A0A7S2RDT9_9STRA (Vacuolar protein sorting-associated protein 54 (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RDT9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.900e-22
Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    4 ALSELMERSVSQLLSVRREHNCTKLDVDELKHLWDITVAFIQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWAQADVTPERQAVLDRLSSGQV 327
            A +EL  +SV++LL +R+E + + +  DE+K LWD  +AF   +E+ SG   Y LRSTLL+QAKAFVE +HE+N  +LV  LD EKW+Q+DV+ ERQA L RL SG+ 
Sbjct:  410 AAAELSHKSVTELLRLRKEAH-SLVSFDEMKRLWDSCLAFTLQLEKYSGQKAYGLRSTLLAQAKAFVERQHESNMASLVAALDGEKWSQSDVSYERQATLTRLCSGRA 516          
BLAST of mRNA_E-fasciculatus_F_contig13181.2401.1 vs. uniprot
Match: A0A7S2W529_9STRA (Vacuolar protein sorting-associated protein 54 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W529_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.100e-22
Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    4 ALSELMERSVSQLLSVRREHNCTKLDVDELKHLWDITVAFIQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWAQADVTPERQAVLDRLSSGQV 327
            A +EL  +SV++LL +R+E + + +  DE+K LWD  +AF   +E+ SG   Y LRSTLL+QAKAFVE +HE+N  +LV  LD EKW+Q+DV+ ERQA L RL SG+ 
Sbjct:  410 AAAELSHKSVTELLRLRKEAH-SLVSFDEMKRLWDSCLAFTLQLEKYSGQKAYGLRSTLLAQAKAFVERQHESNMASLVAALDGEKWSQSDVSYERQATLTRLCSGRA 516          
BLAST of mRNA_E-fasciculatus_F_contig13181.2401.1 vs. uniprot
Match: B8C131_THAPS (Vps54 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C131_THAPS)

HSP 1 Score: 104 bits (259), Expect = 4.550e-22
Identity = 58/117 (49.57%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    4 ALSELMERSVSQLLSVRREHNCTKLDVDELKHLWDITVAFIQSVERLSGCNGYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWAQADVTPERQAVLDRLSSGQV-FRPSAPAA 351
            A ++L E+SVS+LL +RRE + + +  D ++ LWD ++ F   +ER SG   Y LRSTLL+QAK+FVE +HEAN  TLV  LD+E+W Q  V+ +RQA L RL SG+  F    PAA
Sbjct:  969 AAADLSEKSVSELLRLRREAH-SLVSFDGMRQLWDTSLTFTLQLERFSGRKAYGLRSTLLAQAKSFVERKHEANMSTLVAALDSERWVQCTVSADRQAALTRLCSGRAAFTSRKPAA 1084          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13181.2401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0A0_ECTSI4.160e-12595.02Vacuolar protein sorting-associated protein 54 n=1... [more]
A0A7S2FL57_9STRA5.380e-3340.18Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2S5D4_9STRA9.610e-3341.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1TZU2_9STRA6.490e-3139.64Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4RD23_9STRA1.240e-2636.20Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S2XS08_9STRA1.270e-2637.17Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A835YJU9_9STRA3.140e-2638.05Vacuolar protein sorting-associated protein 54 (Fr... [more]
A0A7S2RDT9_9STRA2.900e-2251.85Vacuolar protein sorting-associated protein 54 (Fr... [more]
A0A7S2W529_9STRA3.100e-2251.85Vacuolar protein sorting-associated protein 54 n=1... [more]
B8C131_THAPS4.550e-2249.57Vps54 domain-containing protein n=1 Tax=Thalassios... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13181contigE-fasciculatus_F_contig13181:814..3153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score388.3
Seed ortholog evalue2.4e-105
Seed eggNOG ortholog2880.D7G0A0
Preferred nameVPS54
KEGG koko:K10357,ko:K17600
GOsGO:0000003,GO:0000138,GO:0000139,GO:0000149,GO:0000938,GO:0001675,GO:0001894,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005794,GO:0005795,GO:0005802,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006996,GO:0006997,GO:0007010,GO:0007034,GO:0007041,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0009272,GO:0009507,GO:0009536,GO:0009653,GO:0009987,GO:0010256,GO:0010927,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0019725,GO:0019905,GO:0019953,GO:0022402,GO:0022412,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030435,GO:0030437,GO:0030476,GO:0031090,GO:0031410,GO:0031505,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0031985,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032588,GO:0032989,GO:0032991,GO:0033036,GO:0033363,GO:0034293,GO:0034613,GO:0040008,GO:0042147,GO:0042244,GO:0042546,GO:0042592,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043934,GO:0043935,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045103,GO:0045104,GO:0045184,GO:0045229,GO:0046907,GO:0048193,GO:0048232,GO:0048468,GO:0048471,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0048873,GO:0048878,GO:0050789,GO:0050879,GO:0050881,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0055082,GO:0055088,GO:0060052,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070590,GO:0070591,GO:0070726,GO:0070727,GO:0070925,GO:0071554,GO:0071555,GO:0071702,GO:0071705,GO:0071840,GO:0071852,GO:0071940,GO:0090156,GO:0097708,GO:0098588,GO:0098791,GO:0099023,GO:1903046
EggNOG free text desc.Vacuolar protein sorting-associated protein
EggNOG OGsKOG2115@1,KOG2115@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03019,ko03029,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons4
Model size666
Cds size648
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13181.2401.1prot_E-fasciculatus_F_contig13181.2401.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13181 832..3153 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927821.5002515-UTR-E-fasciculatus_F_contig13181:813..8311622927821.5002515-UTR-E-fasciculatus_F_contig13181:813..831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13181 814..831 +
1695995709.1776693-UTR-E-fasciculatus_F_contig13181:813..8311695995709.1776693-UTR-E-fasciculatus_F_contig13181:813..831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13181 814..831 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927821.5160966-CDS-E-fasciculatus_F_contig13181:831..9421622927821.5160966-CDS-E-fasciculatus_F_contig13181:831..942Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13181 832..942 +
1695995709.1880414-CDS-E-fasciculatus_F_contig13181:831..9421695995709.1880414-CDS-E-fasciculatus_F_contig13181:831..942Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13181 832..942 +
1622927821.5289383-CDS-E-fasciculatus_F_contig13181:1705..18461622927821.5289383-CDS-E-fasciculatus_F_contig13181:1705..1846Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13181 1706..1846 +
1695995709.1968257-CDS-E-fasciculatus_F_contig13181:1705..18461695995709.1968257-CDS-E-fasciculatus_F_contig13181:1705..1846Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13181 1706..1846 +
1622927821.5399985-CDS-E-fasciculatus_F_contig13181:2552..27611622927821.5399985-CDS-E-fasciculatus_F_contig13181:2552..2761Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13181 2553..2761 +
1695995709.2081544-CDS-E-fasciculatus_F_contig13181:2552..27611695995709.2081544-CDS-E-fasciculatus_F_contig13181:2552..2761Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13181 2553..2761 +
1622927821.5561745-CDS-E-fasciculatus_F_contig13181:2966..31531622927821.5561745-CDS-E-fasciculatus_F_contig13181:2966..3153Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13181 2967..3153 +
1695995709.2166605-CDS-E-fasciculatus_F_contig13181:2966..31531695995709.2166605-CDS-E-fasciculatus_F_contig13181:2966..3153Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13181 2967..3153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13181.2401.1

>prot_E-fasciculatus_F_contig13181.2401.1 ID=prot_E-fasciculatus_F_contig13181.2401.1|Name=mRNA_E-fasciculatus_F_contig13181.2401.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=216bp
MERSVSQLLSVRREHNCTKLDVDELKHLWDITVAFIQSVERLSGCNGYKL
RSTLLSQAKAFVEARHEANKQTLVKRLDAEKWAQADVTPERQAVLDRLSS
GQVFRPSAPAATANGNDGKEGSGVGGGGSSSYGNGGLRLPGDPPAQPNFV
GGARSGGRKGGRAERRREAGVGGASFKAVGSALLVAEMSANFLQFADHFP
TIGTDILTRLGELLRV
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mRNA from alignment at E-fasciculatus_F_contig13181:814..3153+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13181.2401.1 ID=mRNA_E-fasciculatus_F_contig13181.2401.1|Name=mRNA_E-fasciculatus_F_contig13181.2401.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2340bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13181:814..3153+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGCACTGAGCGAGCTTATGGAGCGTAGCGTATCCCAGCTGCTGAGCGT GCGGCGAGAGCACAACTGCACCAAGCTGGACGTGGATGAGCTGAAGCACT TGTGGGATATAACCGTCGCCTTCATCCAGGTGAACGCAACTCCTGTGTGC GTGGATCACGATAGGCATACCGCAGTCGTGGCTCCGATATAAGAGAAGAC CTTGCCAGAGGGGGCTCCGATTTAAGAGAAGTATCATACAATTGTATGCA CGGCGGTGTTCCAGGTGGTTATTCTCAGGCTGGCGTGGACGAATCGCAAC AATCCAGCAACAATGTTGTTTTTTGGCGTTAATGTTGTTGTTGTTGTTGT TGTTGTTGTTGTTGTCTACCAAAATAAAATGGACCCCAAGGGTCAGCAAA GCGATAAAATACAAGAAAACAAAAGAATCAGAAACAAATAAAATAAAATA AATAATTAGTGGAACGGCCGCACCACCAGCCTGGGGGGTAGCCTACCACT ACATGGAGGCAGGTCGACGGCCAAAGAAAGGGGCGGGGGTACGTGCCAGT AAAAAACAAAACAAAAGACAAAATAAAACAATAGTCGAAGGCAAAGTACC GCAGGAGAGGTGGGTAGAGAGGAACCCTTAGGTGTGACCACGGGTTGGAG TAAACAAAAACGGCAGAAATGCTGTGAGCGCTGGTTTGAAGTGGAAAAAA GTATGTACACTCCTGTATACTGCTGTATATTGATTTGGGGGACACGTGTA CCATTAATGAACATTAGCCAACACGTGTTAGAAGAACGCTGCCTACGCTC GTCCGTTTTCTGGGGTGCTCTGTCTTGACGCACCTTCACTATGCTGCTGT CCCTCTCTGGTTCTCCGCCTGGCACGACCCCGGCCGTCCTAGTCTGTGGA GCGGCTGAGCGGTTGCAACGGCTACAAGCTGAGGAGCACCCTCCTGTCTC AGGCCAAGGCCTTTGTCGAAGCGAGGCACGAGGCCAACAAGCAGACGCTT GTGAAGCGACTTGACGCCGAGAAGTGGGCACAGGTGAAGAGTGAAGAGTG AAGAGAAGAGTAATACTATACTCATACAGTAGTACATGCATACATGGAGA GCATGGAGAGGAGGGGTTGAGCCAGACGGGGGAAGGGAGAGAGAGGTCGG CGGAAGGGGGAGAAGGAGAGAAAAAAACGGGTAAGACAGACAGACCGACG GAGAGACAACGAGAGAGACAGACAGACAGACAGACAGAGAGCACGAAAGT ATGAACAAACATGTATGTGATCGAACGCTGCTGGTGCTTTCGCGTGCGTT TTAACGCCAGTGTTGTCTCTCCCAACATCGAAAAGAAGCCACCAATGATT GAACATGCACCACCACCCGCATCTTACACTGGCTTTACTCCCAAATTTGT CCGTCAGGGGTAACACACGCCAGGGTCCTACAGATGGATCAAGCATCGCT TTCGTTCATTGTGCTTTTCTTTTTTTAAACATGCAATGTCTACAATCACC GAAGGATGTTCTCCGCGTTCGAGATGTTGCCACGGTCGAAGCGGCTGTCT TTGCCTGCAAATACCCATTGAGATGTCTAGTAGGTGTCGATAGGCTGCTG TAATACCTACTGCAATGACCAATAGCCTATCCAATAGGGTATTTATCGAG GGTGTGCTGTTGCAGTGAGTGTTGGGAGAAAAAAGCGGCTGGACACTTTC GTTTTTGTTTTGTTCTCTCTTTCTGCTTAATGTTCGCAGGCCGATGTCAC CCCCGAGCGTCAGGCGGTGCTCGACCGGTTGTCCAGCGGCCAAGTCTTCC GCCCCTCCGCGCCCGCGGCCACCGCTAACGGTAACGATGGCAAGGAAGGA AGTGGTGTCGGCGGCGGCGGCAGCAGCAGCTACGGCAACGGGGGGTTGAG ATTGCCGGGGGACCCGCCGGCGCAACCTAACTTCGTGGGGGGTGCGAGGT GCGCGCTTGCGGCAGCGATTGTTGCGATGCTGCTGGTTGATCATTGTGGA GATGACCTTCATAAGGGGTACAAGCTCACAGAAGATGTCATCTGTCGAGG GCCATTGCCTCATTTTAACGCGCAAGCTCATGGGGAGTAACAGCATCTTG TGTTGTATCTCACTCATGCCGTCTTTCCTTTGCTGCTTTCTACGCAAACG AAGGTCGGGGGGGCGCAAGGGGGGTAGAGCGGAGCGTCGCAGAGAAGCCG GGGTAGGGGGGGCGAGCTTCAAGGCCGTCGGGAGTGCGCTGCTGGTGGCG GAGATGTCGGCCAACTTCCTGCAGTTCGCGGATCACTTCCCGACCATCGG CACCGACATCCTCACCAGACTTGGCGAGCTGTTGAGGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13181:814..3153+

>mRNA_E-fasciculatus_F_contig13181.2401.1 ID=mRNA_E-fasciculatus_F_contig13181.2401.1|Name=mRNA_E-fasciculatus_F_contig13181.2401.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1296bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13181:814..3153+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGCGTAGCGTATCCCAGCTGCTGAGCGTGCGGCGAGAGCACAACTG
CACCAAGCTGGACGTGGATGAGCTGAAGCACTTGTGGGATATAACCGTCG
CCTTCATCCAGATGGAGCGTAGCGTATCCCAGCTGCTGAGCGTGCGGCGA
GAGCACAACTGCACCAAGCTGGACGTGGATGAGCTGAAGCACTTGTGGGA
TATAACCGTCGCCTTCATCCAGTCTGTGGAGCGGCTGAGCGGTTGCAACG
GCTACAAGCTGAGGAGCACCCTCCTGTCTCAGGCCAAGGCCTTTGTCGAA
GCGAGGCACGAGGCCAACAAGCAGACGCTTGTGAAGCGACTTGACGCCGA
GAAGTGGGCACAGTCTGTGGAGCGGCTGAGCGGTTGCAACGGCTACAAGC
TGAGGAGCACCCTCCTGTCTCAGGCCAAGGCCTTTGTCGAAGCGAGGCAC
GAGGCCAACAAGCAGACGCTTGTGAAGCGACTTGACGCCGAGAAGTGGGC
ACAGGCCGATGTCACCCCCGAGCGTCAGGCGGTGCTCGACCGGTTGTCCA
GCGGCCAAGTCTTCCGCCCCTCCGCGCCCGCGGCCACCGCTAACGGTAAC
GATGGCAAGGAAGGAAGTGGTGTCGGCGGCGGCGGCAGCAGCAGCTACGG
CAACGGGGGGTTGAGATTGCCGGGGGACCCGCCGGCGCAACCTAACTTCG
TGGGGGGTGCGAGGCCGATGTCACCCCCGAGCGTCAGGCGGTGCTCGACC
GGTTGTCCAGCGGCCAAGTCTTCCGCCCCTCCGCGCCCGCGGCCACCGCT
AACGGTAACGATGGCAAGGAAGGAAGTGGTGTCGGCGGCGGCGGCAGCAG
CAGCTACGGCAACGGGGGGTTGAGATTGCCGGGGGACCCGCCGGCGCAAC
CTAACTTCGTGGGGGGTGCGAGGTCGGGGGGGCGCAAGGGGGGTAGAGCG
GAGCGTCGCAGAGAAGCCGGGGTAGGGGGGGCGAGCTTCAAGGCCGTCGG
GAGTGCGCTGCTGGTGGCGGAGATGTCGGCCAACTTCCTGCAGTTCGCGG
ATCACTTCCCGACCATCGGCACCGACATCCTCACCAGACTTGGCGAGCTG
TTGAGGGTGGTCGGGGGGGCGCAAGGGGGGTAGAGCGGAGCGTCGCAGAG
AAGCCGGGGTAGGGGGGGCGAGCTTCAAGGCCGTCGGGAGTGCGCTGCTG
GTGGCGGAGATGTCGGCCAACTTCCTGCAGTTCGCGGATCACTTCCCGAC
CATCGGCACCGACATCCTCACCAGACTTGGCGAGCTGTTGAGGGTG
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