mRNA_E-fasciculatus_F_contig13175.2394.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13175.2394.1
Unique NamemRNA_E-fasciculatus_F_contig13175.2394.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.290e-24
Identity = 55/60 (91.67%), Postives = 59/60 (98.33%), Query Frame = 2
Query:    2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQAAGEGGED 181
            E+KLTSITSQLTLLTLHFPQLRILWSKSEHA+AD+FKELM+NNAAVDVAKAQAAG GGED
Sbjct: 1093 EIKLTSITSQLTLLTLHFPQLRILWSKSEHASADMFKELMKNNAAVDVAKAQAAGGGGED 1152          
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A836CHN3_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHN3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.650e-10
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 2
Query:    2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQAAG 166
            ++K+ +I S++ LLT+HFPQLR+LWS+S HAT  IF+ LM N A VD A A AAG
Sbjct:  266 DIKVDAICSKMALLTMHFPQLRVLWSRSPHATVAIFEALMRNEAPVDAAAALAAG 320          
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A8C5PQD0_9ANUR (ERCC excision repair 4, endonuclease catalytic subunit n=2 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PQD0_9ANUR)

HSP 1 Score: 60.5 bits (145), Expect = 3.380e-9
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 2
Query:    2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQA 160
            E+ +  ITS++TLLTLHFP+LRILW  S HATA++F+EL +N +  D A A A
Sbjct:  760 EISVNDITSKITLLTLHFPKLRILWCASPHATAELFEELKQNRSQPDAATAMA 812          
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A4D9D5Y9_9STRA (ERCC4 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Y9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.630e-9
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 2
Query:    2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQAAGEG 172
            ++++T+I S+L LLTLHFP LRILWS++ H T  +FK L   NA VDV KA  AG G
Sbjct: 1000 DIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKALTAGGG 1056          
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A7K9GLK6_LOXLE (XPF endonuclease (Fragment) n=1 Tax=Loxia leucoptera TaxID=96539 RepID=A0A7K9GLK6_LOXLE)

HSP 1 Score: 59.7 bits (143), Expect = 6.310e-9
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 2
Query:    2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQA 160
            E+    +TS+LTLLTLHFP+LRILW  S HATA++F+EL +N+   D  KA A
Sbjct:  710 EISSNDVTSKLTLLTLHFPKLRILWCPSPHATAELFEELKQNHPQPDAEKAMA 762          
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A7K5E5Y6_POLCE (XPF endonuclease (Fragment) n=1 Tax=Polioptila caerulea TaxID=66707 RepID=A0A7K5E5Y6_POLCE)

HSP 1 Score: 59.7 bits (143), Expect = 6.310e-9
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 2
Query:    2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQA 160
            E+    +TS+LTLLTLHFP+LRILW  S HATA++F+EL +N+   D  KA A
Sbjct:  771 EISSNDVTSKLTLLTLHFPKLRILWCPSPHATAELFEELKQNHPQPDAEKAMA 823          
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A7K4UVP5_9EMBE (XPF endonuclease (Fragment) n=1 Tax=Emberiza fucata TaxID=337179 RepID=A0A7K4UVP5_9EMBE)

HSP 1 Score: 59.7 bits (143), Expect = 6.310e-9
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 2
Query:    2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQA 160
            E+    +TS+LTLLTLHFP+LRILW  S HATA++F+EL +N+   D A A A
Sbjct:  776 EISSNDVTSKLTLLTLHFPKLRILWCPSPHATAEVFEELKQNHPQPDAATAMA 828          
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A7L3A0F7_9PASE (XPF endonuclease (Fragment) n=1 Tax=Prunella fulvescens TaxID=670355 RepID=A0A7L3A0F7_9PASE)

HSP 1 Score: 59.3 bits (142), Expect = 8.620e-9
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 2
Query:    2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQA 160
            E+    +TS+LTLLTLHFP+LRILW  S HATA++F+EL +N    D  KA A
Sbjct:  708 EISSNDVTSKLTLLTLHFPKLRILWCPSPHATAELFEELKQNRPQPDAEKAMA 760          
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A850YRB8_AEGCA (XPF endonuclease (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A850YRB8_AEGCA)

HSP 1 Score: 59.3 bits (142), Expect = 8.620e-9
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 2
Query:    2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQA 160
            E+    +TS+LTLLTLHFP+LRILW  S HATA++F+EL +N+A  D   A A
Sbjct:  710 EISSNDVTSKLTLLTLHFPKLRILWCPSPHATAELFEELKQNHAQPDAETAMA 762          
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: UPI001125F7D3 (DNA repair endonuclease XPF isoform X1 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI001125F7D3)

HSP 1 Score: 59.3 bits (142), Expect = 8.630e-9
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 2
Query:    2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQA 160
            E+ +  ITS+LTLLTLHFP+LRILW  S HATA++F+EL +N    D A A A
Sbjct:  750 EISVNDITSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNRLQPDAAVAVA 802          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEA6_9PHAE2.290e-2491.67ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CHN3_9STRA2.650e-1058.18Restriction endonuclease type II-like protein n=1 ... [more]
A0A8C5PQD0_9ANUR3.380e-956.60ERCC excision repair 4, endonuclease catalytic sub... [more]
A0A4D9D5Y9_9STRA4.630e-956.14ERCC4 domain-containing protein n=1 Tax=Nannochlor... [more]
A0A7K9GLK6_LOXLE6.310e-956.60XPF endonuclease (Fragment) n=1 Tax=Loxia leucopte... [more]
A0A7K5E5Y6_POLCE6.310e-956.60XPF endonuclease (Fragment) n=1 Tax=Polioptila cae... [more]
A0A7K4UVP5_9EMBE6.310e-956.60XPF endonuclease (Fragment) n=1 Tax=Emberiza fucat... [more]
A0A7L3A0F7_9PASE8.620e-956.60XPF endonuclease (Fragment) n=1 Tax=Prunella fulve... [more]
A0A850YRB8_AEGCA8.620e-956.60XPF endonuclease (Fragment) n=2 Tax=Passeriformes ... [more]
UPI001125F7D38.630e-958.49DNA repair endonuclease XPF isoform X1 n=2 Tax=Rhi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13175contigE-fasciculatus_F_contig13175:1494..1916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size184
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927820.777571-CDS-E-fasciculatus_F_contig13175:1493..15951622927820.777571-CDS-E-fasciculatus_F_contig13175:1493..1595Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13175 1494..1595 -
1695995708.8272033-CDS-E-fasciculatus_F_contig13175:1493..15951695995708.8272033-CDS-E-fasciculatus_F_contig13175:1493..1595Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13175 1494..1595 -
1622927820.7937255-CDS-E-fasciculatus_F_contig13175:1835..19161622927820.7937255-CDS-E-fasciculatus_F_contig13175:1835..1916Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13175 1836..1916 -
1695995708.8350718-CDS-E-fasciculatus_F_contig13175:1835..19161695995708.8350718-CDS-E-fasciculatus_F_contig13175:1835..1916Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13175 1836..1916 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13175.2394.1prot_E-fasciculatus_F_contig13175.2394.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13175 1494..1916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13175.2394.1

>prot_E-fasciculatus_F_contig13175.2394.1 ID=prot_E-fasciculatus_F_contig13175.2394.1|Name=mRNA_E-fasciculatus_F_contig13175.2394.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=61bp
RDEADLHHLAAYAPDPPLPSAPHPVVQVGTRDRRHFQGAHGEQRRGRRGE
GSGGRGRRRG*
back to top

mRNA from alignment at E-fasciculatus_F_contig13175:1494..1916-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13175.2394.1 ID=mRNA_E-fasciculatus_F_contig13175.2394.1|Name=mRNA_E-fasciculatus_F_contig13175.2394.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=423bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13175:1494..1916- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGAGATGAAGCTGACCTCCATCACCTCGCAGCTTACGCTCCTGACCCTCC ACTTCCCTCAGCTCCGCATCCTGTGGTCCAAGTGAGCTGCGTGGTTGTTG TTGTTGTTGTAGTTGTTGCTGCTGTTGATATTGCTGTCGAGGTACACAAT GTCGCACACGCTACTCTTGACTCTTGTCTCTGTTCCCCCTTGCCATCATT TCGATGCGTGTCTCTTTGCCTTGTCTGTTGTTCTGGCTTTTCTTACCGAC TTTCGTCTCTGTCTGTTTTCTCCATCTTGACCCGAATCTTCGTTGATCCC ATTGTATTTTATTTTACCCAGGTCGGAACACGCGACCGCCGACATTTTCA AGGAGCTCATGGAGAACAACGCCGCGGTAGACGTGGCGAAGGCTCAGGCG GCCGGGGAAGGCGGAGAGGATGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13175:1494..1916-

>mRNA_E-fasciculatus_F_contig13175.2394.1 ID=mRNA_E-fasciculatus_F_contig13175.2394.1|Name=mRNA_E-fasciculatus_F_contig13175.2394.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=366bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13175:1494..1916- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGAGATGAAGCTGACCTCCATCACCTCGCAGCTTACGCTCCTGACCCTCC
ACTTCCCTCAGCTCCGCATCCTGTGGTCCAACGAGATGAAGCTGACCTCC
ATCACCTCGCAGCTTACGCTCCTGACCCTCCACTTCCCTCAGCTCCGCAT
CCTGTGGTCCAAGTCGGAACACGCGACCGCCGACATTTTCAAGGAGCTCA
TGGAGAACAACGCCGCGGTAGACGTGGCGAAGGCTCAGGCGGCCGGGGAA
GGCGGAGAGGATGAGTCGGAACACGCGACCGCCGACATTTTCAAGGAGCT
CATGGAGAACAACGCCGCGGTAGACGTGGCGAAGGCTCAGGCGGCCGGGG
AAGGCGGAGAGGATGA
back to top