mRNA_E-fasciculatus_F_contig13175.2394.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE) HSP 1 Score: 103 bits (257), Expect = 2.290e-24 Identity = 55/60 (91.67%), Postives = 59/60 (98.33%), Query Frame = 2
Query: 2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQAAGEGGED 181
E+KLTSITSQLTLLTLHFPQLRILWSKSEHA+AD+FKELM+NNAAVDVAKAQAAG GGED
Sbjct: 1093 EIKLTSITSQLTLLTLHFPQLRILWSKSEHASADMFKELMKNNAAVDVAKAQAAGGGGED 1152
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A836CHN3_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHN3_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 2.650e-10 Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 2
Query: 2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQAAG 166
++K+ +I S++ LLT+HFPQLR+LWS+S HAT IF+ LM N A VD A A AAG
Sbjct: 266 DIKVDAICSKMALLTMHFPQLRVLWSRSPHATVAIFEALMRNEAPVDAAAALAAG 320
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A8C5PQD0_9ANUR (ERCC excision repair 4, endonuclease catalytic subunit n=2 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PQD0_9ANUR) HSP 1 Score: 60.5 bits (145), Expect = 3.380e-9 Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 2
Query: 2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQA 160
E+ + ITS++TLLTLHFP+LRILW S HATA++F+EL +N + D A A A
Sbjct: 760 EISVNDITSKITLLTLHFPKLRILWCASPHATAELFEELKQNRSQPDAATAMA 812
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A4D9D5Y9_9STRA (ERCC4 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Y9_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 4.630e-9 Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 2
Query: 2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQAAGEG 172
++++T+I S+L LLTLHFP LRILWS++ H T +FK L NA VDV KA AG G
Sbjct: 1000 DIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKALTAGGG 1056
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A7K9GLK6_LOXLE (XPF endonuclease (Fragment) n=1 Tax=Loxia leucoptera TaxID=96539 RepID=A0A7K9GLK6_LOXLE) HSP 1 Score: 59.7 bits (143), Expect = 6.310e-9 Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 2
Query: 2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQA 160
E+ +TS+LTLLTLHFP+LRILW S HATA++F+EL +N+ D KA A
Sbjct: 710 EISSNDVTSKLTLLTLHFPKLRILWCPSPHATAELFEELKQNHPQPDAEKAMA 762
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A7K5E5Y6_POLCE (XPF endonuclease (Fragment) n=1 Tax=Polioptila caerulea TaxID=66707 RepID=A0A7K5E5Y6_POLCE) HSP 1 Score: 59.7 bits (143), Expect = 6.310e-9 Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 2
Query: 2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQA 160
E+ +TS+LTLLTLHFP+LRILW S HATA++F+EL +N+ D KA A
Sbjct: 771 EISSNDVTSKLTLLTLHFPKLRILWCPSPHATAELFEELKQNHPQPDAEKAMA 823
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A7K4UVP5_9EMBE (XPF endonuclease (Fragment) n=1 Tax=Emberiza fucata TaxID=337179 RepID=A0A7K4UVP5_9EMBE) HSP 1 Score: 59.7 bits (143), Expect = 6.310e-9 Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 2
Query: 2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQA 160
E+ +TS+LTLLTLHFP+LRILW S HATA++F+EL +N+ D A A A
Sbjct: 776 EISSNDVTSKLTLLTLHFPKLRILWCPSPHATAEVFEELKQNHPQPDAATAMA 828
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A7L3A0F7_9PASE (XPF endonuclease (Fragment) n=1 Tax=Prunella fulvescens TaxID=670355 RepID=A0A7L3A0F7_9PASE) HSP 1 Score: 59.3 bits (142), Expect = 8.620e-9 Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 2
Query: 2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQA 160
E+ +TS+LTLLTLHFP+LRILW S HATA++F+EL +N D KA A
Sbjct: 708 EISSNDVTSKLTLLTLHFPKLRILWCPSPHATAELFEELKQNRPQPDAEKAMA 760
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: A0A850YRB8_AEGCA (XPF endonuclease (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A850YRB8_AEGCA) HSP 1 Score: 59.3 bits (142), Expect = 8.620e-9 Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 2
Query: 2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQA 160
E+ +TS+LTLLTLHFP+LRILW S HATA++F+EL +N+A D A A
Sbjct: 710 EISSNDVTSKLTLLTLHFPKLRILWCPSPHATAELFEELKQNHAQPDAETAMA 762
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Match: UPI001125F7D3 (DNA repair endonuclease XPF isoform X1 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI001125F7D3) HSP 1 Score: 59.3 bits (142), Expect = 8.630e-9 Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 2
Query: 2 EMKLTSITSQLTLLTLHFPQLRILWSKSEHATADIFKELMENNAAVDVAKAQA 160
E+ + ITS+LTLLTLHFP+LRILW S HATA++F+EL +N D A A A
Sbjct: 750 EISVNDITSKLTLLTLHFPRLRILWCPSPHATAELFEELKQNRLQPDAAVAVA 802 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13175.2394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13175.2394.1 >prot_E-fasciculatus_F_contig13175.2394.1 ID=prot_E-fasciculatus_F_contig13175.2394.1|Name=mRNA_E-fasciculatus_F_contig13175.2394.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=61bp RDEADLHHLAAYAPDPPLPSAPHPVVQVGTRDRRHFQGAHGEQRRGRRGEback to top mRNA from alignment at E-fasciculatus_F_contig13175:1494..1916- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13175.2394.1 ID=mRNA_E-fasciculatus_F_contig13175.2394.1|Name=mRNA_E-fasciculatus_F_contig13175.2394.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=423bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13175:1494..1916- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13175:1494..1916- >mRNA_E-fasciculatus_F_contig13175.2394.1 ID=mRNA_E-fasciculatus_F_contig13175.2394.1|Name=mRNA_E-fasciculatus_F_contig13175.2394.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=366bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13175:1494..1916- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |