mRNA_E-fasciculatus_F_contig1311.2356.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1311.2356.1
Unique NamemRNA_E-fasciculatus_F_contig1311.2356.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: D8LBC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBC5_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 1.770e-62
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 3
Query:  300 MSSEVSARNPELLKEEDTARPKFVNRGLLRWERERKAWLAGGSGGPVGRRRARARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 599
            MSSEVSARNPELLKEEDTARPKFVNRGLLRWERERKAWLAGG+GGPVGRRRARARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD
Sbjct:    1 MSSEVSARNPELLKEEDTARPKFVNRGLLRWERERKAWLAGGTGGPVGRRRARARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 100          
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A7S1E125_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E125_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.320e-15
Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = 3
Query:  342 EEDTARPKFVNRGLLRWERERKAWLAGGSGGPVGRRRARARTMDVDEVIDDLFSGRGGT-----GNLPQSVPLPQMIDLLVDLWEAEGL 593
            +E    P+FVN+G L+WE  R  W++  +     + +  A+ +DVDE+ID +FS R  +        P++VPLPQM+D+LVDLWEAEGL
Sbjct:   27 QEGADEPQFVNQGFLKWEESRNKWISS-TQESNSKTKTGAKALDVDEIIDLIFSQRWRSQSPERNQFPEAVPLPQMVDILVDLWEAEGL 114          
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A448ZS03_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS03_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.010e-14
Identity = 48/92 (52.17%), Postives = 55/92 (59.78%), Query Frame = 3
Query:  366 FVNRGLLRWERERKAWLAGGSGGPVGRRRAR--ARTMDVDEVIDDLFSGR---------GGTGNL-----PQSVPLPQMIDLLVDLWEAEGL 593
            FVN GLLRW+  R  W +GG G P  R  A   A  +DVDEVID LF  R         G T +L     P++VPLPQMID+L DLWEAEGL
Sbjct:   59 FVNNGLLRWQAARSEWCSGG-GSPASRAPASFSAVQLDVDEVIDVLFDPRWRGGPPRTSGSTRSLVPPRFPKNVPLPQMIDVLTDLWEAEGL 149          
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A7S3KWA5_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWA5_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.730e-14
Identity = 49/109 (44.95%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  297 IMSSEVSARNPELLKEEDTARPKFVNRGLLRWERERKAWLA--GGSGGPVGRRRARARTMDVDEVIDDLF---SGRGGTGN-----LPQSVPLPQMIDLLVDLWEAEGL 593
            I+  ++   + E+  EE   R  FVN+GL+RWE  R AWL   G S       R  A  +DVD++ID LF   S  G  GN      P++VPLPQM+D+L DLWEAEGL
Sbjct:   85 IIPDDLKNESKEMTVEE--IRASFVNQGLMRWETARSAWLGERGDSDDTGSSARPTAVPLDVDKIIDVLFYASSREGRAGNAKPEKFPRNVPLPQMVDILQDLWEAEGL 191          
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A835Z3H3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3H3_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 9.600e-14
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 3
Query:  366 FVNRGLLRWERERKAWLAGGSGGPVGRRRA--------RARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 599
            FVN+GL RWE ER+ W+  G                  +A+T+D D +ID +F G+G  G LP+ V LPQMI+LLVDLWE EGL+D
Sbjct:   93 FVNQGLRRWEAERQRWVQKGXXXXXXXXXXXXXXXXXRKAQTVDTDAIIDTIFVGKGN-GVLPRPVMLPQMINLLVDLWETEGLYD 177          
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A4D9DFS2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFS2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.690e-13
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 3
Query:  354 ARPKFVNRGLLRWERERKAWLAGGSGGPVGRRRA-----------RARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 599
            +R ++VN GL  W   R+ W +  +    G  R+           RAR++DVD VI+ +FS  G    LPQ VPL QMIDLLVD WEA+GL+D
Sbjct:   44 SREEYVNSGLKLWSERRREWQSKNNQSEGGGTRSEPPPARSQLPKRARSVDVDHVIESIFSTTGDA-RLPQPVPLSQMIDLLVDFWEADGLYD 135          
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A7S1D623_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D623_CYCTE)

HSP 1 Score: 76.6 bits (187), Expect = 5.280e-13
Identity = 39/81 (48.15%), Postives = 48/81 (59.26%), Query Frame = 3
Query:  366 FVNRGLLRWERERKAWLAGGSGGPVGRRRARARTMDVDEVIDDLFSGR-----GGTGNLPQSVPLPQMIDLLVDLWEAEGL 593
            F+N GLLRWE  R  WL   +     +    A  +DVD +ID +FS R     G   + PQ VPL QM+D+LVDLWEAEGL
Sbjct:  103 FINEGLLRWEESRATWLKSDTSDSTAKA---AIPLDVDAIIDLIFSQRWRNQEGEASSFPQPVPLTQMVDILVDLWEAEGL 180          
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A7S2E517_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E517_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.020e-12
Identity = 47/104 (45.19%), Postives = 56/104 (53.85%), Query Frame = 3
Query:  366 FVNRGLLRWERERKAWLAGGS-------GGPVGRRRARARTMDVDEVIDDLFS-------------GRGGTG--------NLPQSVPLPQMIDLLVDLWEAEGL 593
            FVN GL RWE ER  WL+  S          V +++  A  +DVDEVID +FS             GRGG G        + P  VPLPQM+D+LVDLWEAEGL
Sbjct:   49 FVNVGLQRWEVERARWLSSASLDETHPTNKSVQQQQRHAIELDVDEVIDCVFSNRWRQTAQQLPSGGRGGRGFHQKIDDGSFPCPVPLPQMVDILVDLWEAEGL 152          
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A7S2XR72_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XR72_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.280e-11
Identity = 45/100 (45.00%), Postives = 53/100 (53.00%), Query Frame = 3
Query:  366 FVNRGLLRWERERKAWLAGGSGG--------PVGRRRARARTMDVDEVIDDLFSGR-----------GGT-----GNLPQSVPLPQMIDLLVDLWEAEGL 593
            +VN GLL WE+ RK WL   +G           G  RA A  +DVDE+ID +FS R           G T     G     VPLPQM+D+LVDLWEAEGL
Sbjct:   26 YVNTGLLHWEKGRKHWLRKKAGSVGEEDKKEEEGEERA-AINIDVDEIIDIIFSNRWRVTSPSNSLPGKTTETARGTFAHPVPLPQMVDILVDLWEAEGL 124          
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A5N6P464_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P464_9ASTR)

HSP 1 Score: 70.5 bits (171), Expect = 6.160e-11
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  297 IMSSEVSARNPELLKEEDTAR--PKFVNRGLLRWERERKAWLAGGSGGPVGRRRARARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 599
            + +S VS  NP L     +    P+FVN GLL W + R+ W+  G  G V R++AR   +  +   D+L    G     P+ +PLP+M++ LVD+WE EGL+D
Sbjct:   70 LSASSVSMSNPNLDGHYTSGSNPPEFVNHGLLIWNQTRQQWI--GDKGSVLRKKAREPAISWNATYDNLL---GSNKPFPKPIPLPEMVNFLVDVWEEEGLYD 167          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBC5_ECTSI1.770e-6299.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1E125_9STRA4.320e-1543.82Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A448ZS03_9STRA2.010e-1452.17Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3KWA5_9STRA2.730e-1444.95Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A835Z3H3_9STRA9.600e-1447.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DFS2_9STRA4.690e-1344.09Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1D623_CYCTE5.280e-1348.15Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2E517_9STRA1.020e-1245.19Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2XR72_9STRA1.280e-1145.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A5N6P464_9ASTR6.160e-1137.86Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1311contigE-fasciculatus_F_contig1311:7254..12632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.4
Seed ortholog evalue5.1e-50
Seed eggNOG ortholog2880.D8LBC5
EggNOG OGs2E6JY@1,2SD9A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_004430.1
Exons3
Model size1029
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1311.2356.1prot_E-fasciculatus_F_contig1311.2356.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1311 7681..12333 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927815.482649-UTR-E-fasciculatus_F_contig1311:7253..76801622927815.482649-UTR-E-fasciculatus_F_contig1311:7253..7680Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1311 7254..7680 -
1695995706.5770237-UTR-E-fasciculatus_F_contig1311:7253..76801695995706.5770237-UTR-E-fasciculatus_F_contig1311:7253..7680Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1311 7254..7680 -
1622927815.53609-UTR-E-fasciculatus_F_contig1311:12333..126321622927815.53609-UTR-E-fasciculatus_F_contig1311:12333..12632Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1311 12334..12632 -
1695995706.619159-UTR-E-fasciculatus_F_contig1311:12333..126321695995706.619159-UTR-E-fasciculatus_F_contig1311:12333..12632Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1311 12334..12632 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927815.494204-CDS-E-fasciculatus_F_contig1311:7680..78311622927815.494204-CDS-E-fasciculatus_F_contig1311:7680..7831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1311 7681..7831 -
1695995706.5872817-CDS-E-fasciculatus_F_contig1311:7680..78311695995706.5872817-CDS-E-fasciculatus_F_contig1311:7680..7831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1311 7681..7831 -
1622927815.5074053-CDS-E-fasciculatus_F_contig1311:8461..85341622927815.5074053-CDS-E-fasciculatus_F_contig1311:8461..8534Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1311 8462..8534 -
1695995706.601254-CDS-E-fasciculatus_F_contig1311:8461..85341695995706.601254-CDS-E-fasciculatus_F_contig1311:8461..8534Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1311 8462..8534 -
1622927815.5230653-CDS-E-fasciculatus_F_contig1311:12254..123331622927815.5230653-CDS-E-fasciculatus_F_contig1311:12254..12333Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1311 12255..12333 -
1695995706.6103916-CDS-E-fasciculatus_F_contig1311:12254..123331695995706.6103916-CDS-E-fasciculatus_F_contig1311:12254..12333Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1311 12255..12333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1311.2356.1

>prot_E-fasciculatus_F_contig1311.2356.1 ID=prot_E-fasciculatus_F_contig1311.2356.1|Name=mRNA_E-fasciculatus_F_contig1311.2356.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
MSSEVSARNPELLKEEDTARPKFVNRGLLRWERERKAWLAGGSGGPVGRR
RARARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD
*
back to top

mRNA from alignment at E-fasciculatus_F_contig1311:7254..12632-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1311.2356.1 ID=mRNA_E-fasciculatus_F_contig1311.2356.1|Name=mRNA_E-fasciculatus_F_contig1311.2356.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5379bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1311:7254..12632- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCGGCCTGTCTCGCACGTCACTCCCAAAATGCACAGCACTGCAGCAGTC CTTGACTGGATCACTCACGCTTCACACCTGTCTATATATCATTGTTGCAT TCATCCGGCCGGGGCAATTGTCTGGCAAGCGTCCAGTTCATCGTCTTCTG TTGGGGCGCTGCATATCATCTAGACACACGGCCCAATTCGCCGCAAAAGA GAGAGTCTGCTAGGGAGGCTGCGAGCAACAGGCAGTCAGTCGTGTGCGGG AGGAGTGCGGGGACGGCGACGGCGTGCCAGAAGGAAGAGGGCGCTCATCA TGTCTTCTGAAGTCTCAGCGAGAAATCCAGAGCTGCTCAAGGAGGAAGAC ACGGCTCGCCCAAAGTTCGTCAATCGCGGTGCGTTCGTTTGGCCGTTGCA AAAGTTTTGTTGCGTTTGATGTTTACAACAAAGCACGCTCAACATGTTTC TCTCACCCGTTATCTGTGTGTGTATGCTACATGTTTGTTTTTCCTAGTAT GTTTTGTATGCATAGACTACAGGTACTTGAGTAGATAGGAGAGGGCGGTC GATCGTTTCGAGACAGGAGAGAGGAAGCCAGATAGTGCGAAGAAAACGAG TTGCCCCGTTGTCTTTGCCTCCTTGCATGGTCAAAAACGCCAATTGGCCA TTCGAGACTCCGCTGTCTCTGCGAGTAGACCCGCCGTGGCTCGGCTCGCG GAAGCTTTTTCGAGCCGACTGCTCCTGACTCGGCCGTAACCGAACGCCCG CTGATTACACCGCGCATCAACAGCAGTGATATGATAGTAATGGGGTGTCC CTCAATTTCTCTGATTAGCTGGCAATCACACCGGCAGCTGCTACGTCCAT ACAAGTAGCTCTACCAACAACCCAGCAGAGAGGATTGATTCACAGCCTGT CGTGCGAAAGTACATACTTGTAAGAGTACAGAGTAGTTATCCCGGTATAT TTGCCGGTCGAATACTGTCGGTCGTCCGGTATAATGCCGGTGAAATCGAC TGGACCGCACGGAGCCCGGTATGCTGCCGGTACAGGCATTATAGAGGCAA ATAGCTCTATAATGCCGATTCGGGGGTCATCTGGTCCGTGAATAATGCCT GTTCTCAAGAAAAATCCCCAAGCAACAGGGCTTCAGTGGACTCAAAGTAT GCCTATGTAGCATCCAGCCGGTCTTGCTCCCACTCACTGCAAAGACTTCA ACACACCCCGTCGACTGTGATTGTATCTCGAACATGTAGTCTTTCTGTGA TTTTATGAATATCTGTCATACAAACCTTTGTTCGCGCAAACAGCGCACAC CAACACACACAACACACACAACTTCGCTGCCGTACATAGAAGACCAAGAT GGCGATTATCGCGGCGCACGCCTCAACGCTAGCCCGACAGGCAGACTTTG GCCGGCGACTTCGTCAAGATCTGATAGAAGGGCCACAGAGCGATGCTGCT AAGTTTGAATATGCTTCAGCACCAGTAGTAGTGCGCGGTCATGTTGTTGC TTCAGAAGCAGGAACGGGTTACGTCCCGACGACAGTGTTTGAGTGCTGTC ATGTGTCGAATCTGATAGCACCTACCTACTAATTTGTACGTGTCGGTTAT TGTTGTGTGGTAGTGTACTGCATCAACATTCTGGGCGGGGGTGGCATGTA TCGTAGGCAGGACCTGTTACGAAAAATGGGTGCATCCACATGTCCGTACT CCGGATGTTGCTGTGAACAAAAAATATGAGTGAGTGTGTTGATGTTGTTG GTTTTTTCCCTTGTTTCTTTCCTGATGTTTACGCTACGATATATACTTCG AAGTAGTCTATTTTATCGTATGTGCATTTTTGCGAGTCAAGGAATGGCAT CGGGTCAGAACAACAACGTAGGGTGGAACGCGTCAACAGGAGACGCTACT GTGTACATACAACACACATAGAGTTGCTGCAGCAGGACCGAAGATATGAT GAGTGTTGAGCTATGTACGGCCCATCGATGCACGCGCCTCTGAATGATAC TCGACCGCGGCAGGCCTACCAAACCTCATGCCACGGCATCCACTTTCTTC CCCCATCTCGTCATGCTTGTGGTGTACAATATGCTGGCCTATGATCACGT TACCGTGCTGAATAGGTGGATGGTTTACTGAATAGCGCCTACAGCAGTAC TGGCATTATAGTTATAGTTGACGTCTCAGCCCCGAATAATGCCGGAACCG TCACTATTTCAGGCCGAAATTTATATATTGCCGGTGAAATCGGCTGGACC GCACCGGCATTATACCGGGACCACTATGGTGTTGCGTCAAGACTTGGTTT GCAGATGTAACCACGCTAGCTTAGCTCTTTGGAAGCGCAGTACAGCAGGA CCAGTGCAGTGCAGTGCAGTGCAGTGCCAGCCGGGTCACGAGAAGCACCT TAATATTTTGAGCGAGGGTCAAACCTCAACCTCTCATTTTGTCCCCGCCA CTGAGCAAAGGCTTCCACACACGCGCCGGCCGCTATGCTCAGTTTCCTAG GGCACCAAACCGAACCTCGGTTTCTTGCGAACACATTTCTTACGAGAGGC CCGGCACTGCTGTACTGTACTGTGCCTGACACACAGATGAGATGAAGATG GCGACACCACTGAAAGCTCTTGTCTTGCCCGCGGCTCTCGATTCTTTTTT TCCCTGTATTGCAGCCGAACACGACCTAATTGTTTCTAGGTAAGCGTTAC CGCTGTAGGATTGCAAGCTGGGCACCTGTTGTTATGGTCAAATTCTATAC CGTCTCTATCTTATGATCTCTTTTTCGCCTGCGTTTTACCCCCCCTTGCA GGCTCTTAATAGTGGCGGCGCGACTTGATTTGATTTGATTTGATATGCAC GTGACCTGTAAGACCGTAGAATTTGCACGTTGTTGTCAGCTCACATTATA CTTACCTCATGTGCGGACGCTCATGTTTTGAGTATTCCGTTTTGGCCTTG CCTCCTTTCCTTTTTGCATTCATTCGCAGCAAGCTTTCTACGCCATGCTT TTGTTGCCGAGTGATGTAATGTCTAATGGCAGTCTTCCTTCCTTCGTGTT CCAGCGATGACAACACGCCTCTGTTCTACATTACATTACACCAGTGAACA AATCTGTACGTCGAACTTCATACCGTCGTTGTTGAGCATGTTGACACTGC TGTGCTTCCCCTCCGAACAAGTTGAGAGCACGGCCACCCTGTACCGAGTA CCACGTCGTCGTGTCTATCGAAGGGGGGGGAGTAAAAGGCAGCAGATCTC AAAGTAGAAACGAAGTGTTGTGTCCCACACGCGATGGTTTTGTTGAGGGG TTTTCGAACCAGCCGTAGGCGTGGCTGATGGTCTGTCTGCTTCTTGGGAC CGCTCGAGAGAATGTAGCCGTGGCGGTGGCTTGTTGTCGCTGTCGACTCG TCCACTGTTTCTCTATTTCACCTTTTGAGATCGCGGGCTGCTGCAAAAGG TGTTGGATGTTCTGGTGGCCCACATGACATTCCACCTATGTATGGTTCAG CTCCTCCAACTCAAAGCATACCGCTATGGTATCCGACGCGTCAAAACTTA AAGTTTGCGTCGAGGCCCAATCCGTGTTGTCTTTTACGCTGTGGCGGGCG GCCAACCAATCGACGTTGAATTCGCGCGATGATCCCGCCACTTTTTGTGT AGATAGCGCTGACATATCATAGTATTGTGTTCGCTTTCAGATTCAAAACA GAAGTGATTTTCTGTCGACTCCGAGGAAAGCAATCTCACGAACAGTACGG CAGTATTGCCATCGGCGGCTACGTGGGTACCTGTATATCTGGTCCGTAGT CTCGGGTGTCATCACCTCTGAAGCACAGCAGTACATATCAACTGTACTCA AGCTTAGTGGAGGCGCGGGGTAAACACAACGAAGGAATTAAACTAGACGC TCTTTCGCTTCCTTCTGGTGAGGCCTGTATCGCCCAGCCCTGCCATCCAT CCCACTCCCCAGGGTAGCGGCAAATGCTTCCTATTCGCAACACCATTTGA ACGAACGCTATTTAGTGGGTTCGGCCCGACTGCCACCCAATGAACAGTGA AAGCAAGGCTCATGTTGGTTTCGTTTGAATTGGCTGTGATGCGCACAGGT TTGCTTCGGTGGGAGAGGGAACGGAAAGCTTGGCTCGCGGGGGGCAGCGG CGGACCCGTCGGCAGGCGAAGGTGCGTGGGAAACGGCGGTGCAATTTATC TACTCTTTGCTCTTTTGTATCCTATCATGTGCAAGCGCACTTGTTCTGGC ATATTGGTGTCCTCAAAGCGGCAGTGACTGCTACGGGGCTGTATGGCTTG AATGTGTCAGCTGTGAAACGAAGGCAAACGCGAATGTGCTGCCATCTTGT TTCAGAGATACCTGCTTAACTGCTTGTGGTGTGCACATGTAAACTAGCAG TCCCAACGGCTCTTCCTCTCGAGGAGCACAACCGTGAATTTCATGGGTTG GGCCTTGGGCTAAAACACGAGTCAGAGTGACGGCTACAAGTAGAAGACAC GACACCGCTGCGGTTCTCGCCTCTAGGTTGTATCTACTCTGCTACTGTTT CGATTGGGATATTTGTTTTATCAGTTTGACGTCGTTGTCGTTGTGGACTT CTTCACTCGTGTGAATGCGCGATAGACCCCCGTCTACCTCCTTACCAGCA CCTTGCGCGGTTGGCGGCCACGTACGTGTATGTTGTGTTTATCGCTTCAG TACAACAAGAGCTCCGCATTTTTCATCCAGCCCTTGGGTACAGAAGGGCG CGTTGGTGATTTCACGTTGACCAAGACCCTTTCTTGTCCATCGTCTCTCA GGGCTCGAGCTCGCACGATGGACGTGGACGAGGTGATCGACGACCTCTTC TCAGGCCGAGGAGGCACGGGCAACCTCCCGCAGTCGGTCCCACTCCCTCA GATGATCGACCTCTTGGTGGACCTCTGGGAAGCGGAGGGTCTTTTCGACT GATTCTTTGACAACGTGTTGTCTTTGTGGTGGCTGGGGTGGGTGTGAAGA GGCGGCGAGACTTTCGGAGTTTTGCTTTTCTCTTTTTCTGGTGCGGATGG ATGGACGGACGGATGGACGGACGAACGTTTCGACTCATCTTTATGGAAGG CGGCCGGACTGAACACAGTTCGAGTGGTGTTGGCAAAACTGGCTGAAAGC CATTCGGGTGGATGGGAACTGGACTGGACGTTCGATGGGACCGCTGTGGG CAGACGCCGGGGCCCGGGATGGTTCGTCCGGAAAGACAGACCAACGTCTA GGATCGTTTTTGTGTGCTATGCCTTCACGTTGACGCAAGTCGTGGTGAAT AGGTATATTATGTGTGACCTGTTCGTGTCGTGATTGTCCTTGCGTGTTTT TTGTTCGTGGTGCGGAAGGTTGAGCGGGC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1311:7254..12632-

>mRNA_E-fasciculatus_F_contig1311.2356.1 ID=mRNA_E-fasciculatus_F_contig1311.2356.1|Name=mRNA_E-fasciculatus_F_contig1311.2356.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1311:7254..12632- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCTTCTGAAGTCTCAGCGAGAAATCCAGAGCTGCTCAAGGAGGAAGA
CACGGCTCGCCCAAAGTTCGTCAATCGCGATGTCTTCTGAAGTCTCAGCG
AGAAATCCAGAGCTGCTCAAGGAGGAAGACACGGCTCGCCCAAAGTTCGT
CAATCGCGGTTTGCTTCGGTGGGAGAGGGAACGGAAAGCTTGGCTCGCGG
GGGGCAGCGGCGGACCCGTCGGCAGGCGAAGGTTTGCTTCGGTGGGAGAG
GGAACGGAAAGCTTGGCTCGCGGGGGGCAGCGGCGGACCCGTCGGCAGGC
GAAGGGCTCGAGCTCGCACGATGGACGTGGACGAGGTGATCGACGACCTC
TTCTCAGGCCGAGGAGGCACGGGCAACCTCCCGCAGTCGGTCCCACTCCC
TCAGATGATCGACCTCTTGGTGGACCTCTGGGAAGCGGAGGGTCTTTTCG
ACTGAGGCTCGAGCTCGCACGATGGACGTGGACGAGGTGATCGACGACCT
CTTCTCAGGCCGAGGAGGCACGGGCAACCTCCCGCAGTCGGTCCCACTCC
CTCAGATGATCGACCTCTTGGTGGACCTCTGGGAAGCGGAGGGTCTTTTC
GACTGA
back to top