mRNA_E-fasciculatus_F_contig1311.2356.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: D8LBC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBC5_ECTSI) HSP 1 Score: 203 bits (516), Expect = 1.770e-62 Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 3
Query: 300 MSSEVSARNPELLKEEDTARPKFVNRGLLRWERERKAWLAGGSGGPVGRRRARARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 599
MSSEVSARNPELLKEEDTARPKFVNRGLLRWERERKAWLAGG+GGPVGRRRARARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD
Sbjct: 1 MSSEVSARNPELLKEEDTARPKFVNRGLLRWERERKAWLAGGTGGPVGRRRARARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 100
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A7S1E125_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E125_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 4.320e-15 Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = 3
Query: 342 EEDTARPKFVNRGLLRWERERKAWLAGGSGGPVGRRRARARTMDVDEVIDDLFSGRGGT-----GNLPQSVPLPQMIDLLVDLWEAEGL 593
+E P+FVN+G L+WE R W++ + + + A+ +DVDE+ID +FS R + P++VPLPQM+D+LVDLWEAEGL
Sbjct: 27 QEGADEPQFVNQGFLKWEESRNKWISS-TQESNSKTKTGAKALDVDEIIDLIFSQRWRSQSPERNQFPEAVPLPQMVDILVDLWEAEGL 114
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A448ZS03_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS03_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 2.010e-14 Identity = 48/92 (52.17%), Postives = 55/92 (59.78%), Query Frame = 3
Query: 366 FVNRGLLRWERERKAWLAGGSGGPVGRRRAR--ARTMDVDEVIDDLFSGR---------GGTGNL-----PQSVPLPQMIDLLVDLWEAEGL 593
FVN GLLRW+ R W +GG G P R A A +DVDEVID LF R G T +L P++VPLPQMID+L DLWEAEGL
Sbjct: 59 FVNNGLLRWQAARSEWCSGG-GSPASRAPASFSAVQLDVDEVIDVLFDPRWRGGPPRTSGSTRSLVPPRFPKNVPLPQMIDVLTDLWEAEGL 149
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A7S3KWA5_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWA5_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 2.730e-14 Identity = 49/109 (44.95%), Postives = 63/109 (57.80%), Query Frame = 3
Query: 297 IMSSEVSARNPELLKEEDTARPKFVNRGLLRWERERKAWLA--GGSGGPVGRRRARARTMDVDEVIDDLF---SGRGGTGN-----LPQSVPLPQMIDLLVDLWEAEGL 593
I+ ++ + E+ EE R FVN+GL+RWE R AWL G S R A +DVD++ID LF S G GN P++VPLPQM+D+L DLWEAEGL
Sbjct: 85 IIPDDLKNESKEMTVEE--IRASFVNQGLMRWETARSAWLGERGDSDDTGSSARPTAVPLDVDKIIDVLFYASSREGRAGNAKPEKFPRNVPLPQMVDILQDLWEAEGL 191
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A835Z3H3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3H3_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 9.600e-14 Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 3
Query: 366 FVNRGLLRWERERKAWLAGGSGGPVGRRRA--------RARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 599
FVN+GL RWE ER+ W+ G +A+T+D D +ID +F G+G G LP+ V LPQMI+LLVDLWE EGL+D
Sbjct: 93 FVNQGLRRWEAERQRWVQKGXXXXXXXXXXXXXXXXXRKAQTVDTDAIIDTIFVGKGN-GVLPRPVMLPQMINLLVDLWETEGLYD 177
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A4D9DFS2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFS2_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 4.690e-13 Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 3
Query: 354 ARPKFVNRGLLRWERERKAWLAGGSGGPVGRRRA-----------RARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 599
+R ++VN GL W R+ W + + G R+ RAR++DVD VI+ +FS G LPQ VPL QMIDLLVD WEA+GL+D
Sbjct: 44 SREEYVNSGLKLWSERRREWQSKNNQSEGGGTRSEPPPARSQLPKRARSVDVDHVIESIFSTTGDA-RLPQPVPLSQMIDLLVDFWEADGLYD 135
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A7S1D623_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D623_CYCTE) HSP 1 Score: 76.6 bits (187), Expect = 5.280e-13 Identity = 39/81 (48.15%), Postives = 48/81 (59.26%), Query Frame = 3
Query: 366 FVNRGLLRWERERKAWLAGGSGGPVGRRRARARTMDVDEVIDDLFSGR-----GGTGNLPQSVPLPQMIDLLVDLWEAEGL 593
F+N GLLRWE R WL + + A +DVD +ID +FS R G + PQ VPL QM+D+LVDLWEAEGL
Sbjct: 103 FINEGLLRWEESRATWLKSDTSDSTAKA---AIPLDVDAIIDLIFSQRWRNQEGEASSFPQPVPLTQMVDILVDLWEAEGL 180
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A7S2E517_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E517_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.020e-12 Identity = 47/104 (45.19%), Postives = 56/104 (53.85%), Query Frame = 3
Query: 366 FVNRGLLRWERERKAWLAGGS-------GGPVGRRRARARTMDVDEVIDDLFS-------------GRGGTG--------NLPQSVPLPQMIDLLVDLWEAEGL 593
FVN GL RWE ER WL+ S V +++ A +DVDEVID +FS GRGG G + P VPLPQM+D+LVDLWEAEGL
Sbjct: 49 FVNVGLQRWEVERARWLSSASLDETHPTNKSVQQQQRHAIELDVDEVIDCVFSNRWRQTAQQLPSGGRGGRGFHQKIDDGSFPCPVPLPQMVDILVDLWEAEGL 152
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A7S2XR72_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XR72_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.280e-11 Identity = 45/100 (45.00%), Postives = 53/100 (53.00%), Query Frame = 3
Query: 366 FVNRGLLRWERERKAWLAGGSGG--------PVGRRRARARTMDVDEVIDDLFSGR-----------GGT-----GNLPQSVPLPQMIDLLVDLWEAEGL 593
+VN GLL WE+ RK WL +G G RA A +DVDE+ID +FS R G T G VPLPQM+D+LVDLWEAEGL
Sbjct: 26 YVNTGLLHWEKGRKHWLRKKAGSVGEEDKKEEEGEERA-AINIDVDEIIDIIFSNRWRVTSPSNSLPGKTTETARGTFAHPVPLPQMVDILVDLWEAEGL 124
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Match: A0A5N6P464_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P464_9ASTR) HSP 1 Score: 70.5 bits (171), Expect = 6.160e-11 Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 3
Query: 297 IMSSEVSARNPELLKEEDTAR--PKFVNRGLLRWERERKAWLAGGSGGPVGRRRARARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 599
+ +S VS NP L + P+FVN GLL W + R+ W+ G G V R++AR + + D+L G P+ +PLP+M++ LVD+WE EGL+D
Sbjct: 70 LSASSVSMSNPNLDGHYTSGSNPPEFVNHGLLIWNQTRQQWI--GDKGSVLRKKAREPAISWNATYDNLL---GSNKPFPKPIPLPEMVNFLVDVWEEEGLYD 167 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1311.2356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1311.2356.1 >prot_E-fasciculatus_F_contig1311.2356.1 ID=prot_E-fasciculatus_F_contig1311.2356.1|Name=mRNA_E-fasciculatus_F_contig1311.2356.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp MSSEVSARNPELLKEEDTARPKFVNRGLLRWERERKAWLAGGSGGPVGRRback to top mRNA from alignment at E-fasciculatus_F_contig1311:7254..12632- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1311.2356.1 ID=mRNA_E-fasciculatus_F_contig1311.2356.1|Name=mRNA_E-fasciculatus_F_contig1311.2356.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5379bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1311:7254..12632- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1311:7254..12632- >mRNA_E-fasciculatus_F_contig1311.2356.1 ID=mRNA_E-fasciculatus_F_contig1311.2356.1|Name=mRNA_E-fasciculatus_F_contig1311.2356.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1311:7254..12632- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |