mRNA_E-fasciculatus_F_contig13060.2321.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13060.2321.1
Unique NamemRNA_E-fasciculatus_F_contig13060.2321.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13060.2321.1 vs. uniprot
Match: A0A6H5KGH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGH5_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 1.050e-51
Identity = 83/107 (77.57%), Postives = 86/107 (80.37%), Query Frame = 1
Query:    1 SVECAGQFDLPVLGGVDVVEYWRLPLAAEPVLGSPNLMSVLGDYRFFFSTAENLRVFENDKLKYVPAWGGFCSYGVANEPVWTHTTLGPFGNPSKWGIYGGRLHIFR 321
            S ECAGQFDLPVLGGVDVVEYW LPLAAE VLGSPNLMSV G+YRFFFS+ ENLRVFE        A G      +ANEPVWT TTLGPFGNPSKWGIYGGRLHIFR
Sbjct:   25 SAECAGQFDLPVLGGVDVVEYWSLPLAAEAVLGSPNLMSVFGNYRFFFSSVENLRVFEARGFSLRSA-GEKIWQRIANEPVWTSTTLGPFGNPSKWGIYGGRLHIFR 130          
BLAST of mRNA_E-fasciculatus_F_contig13060.2321.1 vs. uniprot
Match: D7FW13_ECTSI (YHS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW13_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 4.240e-45
Identity = 67/109 (61.47%), Postives = 83/109 (76.15%), Query Frame = 1
Query:    1 SVECAGQFDLPVLGGVDVVEYWRLPLAAEPVLGSPNLMSVLGDYRFFFSTAENLRVFENDKLKYVPAWGGFCSYGVANEPVWTHTTLGPFGNPSKWGIY--GGRLHIFR 321
            + +C G   LPVLGGVDVV YW LP  ++PV G+PNL+S+ GDYRF+FS+ ENLR FE+D ++Y+PAWGGFCSYGVA E  W    LGPFG+PSKW I    G+LH+FR
Sbjct:  103 TADCTGDTHLPVLGGVDVVAYWTLPAGSKPVFGTPNLVSLFGDYRFYFSSIENLRTFESDPVRYIPAWGGFCSYGVAAETFWRPDILGPFGDPSKWLILPGDGKLHVFR 211          
BLAST of mRNA_E-fasciculatus_F_contig13060.2321.1 vs. uniprot
Match: D7FW14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW14_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 5.000e-30
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 1
Query:  160 LRVFENDKLKYVPAWGGFCSYGVANEPVWTHTTLGPFGNPSKWGIYGGRLHIFR 321
            LR  ++DKLKYVPAWGGFCSYG+ANE VWT TTLGPFGNPSKWGIYGGRLHIFR
Sbjct:   15 LRFSQHDKLKYVPAWGGFCSYGIANESVWTSTTLGPFGNPSKWGIYGGRLHIFR 68          
BLAST of mRNA_E-fasciculatus_F_contig13060.2321.1 vs. uniprot
Match: A0A7S3UVA0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVA0_HETAK)

HSP 1 Score: 96.7 bits (239), Expect = 7.470e-23
Identity = 49/106 (46.23%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    1 SVECAGQFDLPVLGGVDVVEYWRLPLAAEPVLGSPNLMSVLGDYRFFFSTAENLRVFENDKLKYVPAWGGFCSYGVANEPVWTHTTLGPFGNPSKWGIYGGRLHIF 318
            S  C      PVL G DVV Y+ L    + V GS    SV   + F+FS+ EN+  FE+D  KYVPAWGGFC+YGVA E  WT  T+     P  W I  GRL  F
Sbjct:    5 SAACLDAGAGPVLEGYDVVAYFGLDPLDDGVQGSSEFTSVYQGFEFYFSSKENMEKFESDPEKYVPAWGGFCAYGVAEETWWTAETMSAGVVPDAWRIIDGRLFFF 110          
BLAST of mRNA_E-fasciculatus_F_contig13060.2321.1 vs. uniprot
Match: A0A7S3JR48_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR48_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.880e-22
Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = 1
Query:    1 SVECAGQFDLPVLGGVDVVEYWRLPLAAEPVLGSPNLMSVLGDYRFFFSTAENLRVFENDKLKYVPAWGGFCSYGVANEPVWTHTTLGPFGNPSKWGIYGGRLHIF 318
            S  C      PVL G DVV Y  L + A   +GS +  +  G+Y F+F  AEN   F ++  KYVP +GGFCSYG+ NE  WT  TLGP  N + W IY   L +F
Sbjct:  136 SSSCVDPSAGPVLEGADVVAYRYLNVGANATIGSADYAAKYGEYTFYFENAENRATFLSNPDKYVPKFGGFCSYGITNEFFWTKDTLGPNANKNVWIIYDDHLFVF 241          
BLAST of mRNA_E-fasciculatus_F_contig13060.2321.1 vs. uniprot
Match: A0A6H5JXZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ9_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 7.140e-21
Identity = 46/108 (42.59%), Postives = 58/108 (53.70%), Query Frame = 1
Query:    1 SVECAGQFDLPVLGGVDVVEYWRLPLAAEPVLGSPNLMSVLGD-YRFFFSTAENLRVFENDKLKYVPAWGGFCSYGVANEPVWTHTTLGPFGNPSKWGIYGGRLHIFR 321
            + EC G    P + G D+V Y  L      V G        G  Y F FST EN   FE+D  KY+PAWGGFCS+G+++E +W    LGP  NP  W I   RL++FR
Sbjct:  101 TAECTGDTSKPAVKGFDLVAYRSLQPGTHGVRGLWEFSVQYGQGYTFLFSTLENQLEFESDPEKYLPAWGGFCSFGISHEDIWGPDVLGPPSNPDIWLIEDDRLYLFR 208          
BLAST of mRNA_E-fasciculatus_F_contig13060.2321.1 vs. uniprot
Match: A0A7S3UXT1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXT1_HETAK)

HSP 1 Score: 91.7 bits (226), Expect = 5.340e-20
Identity = 46/98 (46.94%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   31 PVLGGVDVVEYWRLPLAAEPVLGSPNLMSVLGDYRFFFSTAENLRVFENDKLKYVPAWGGFCSYGVANEPVWTHTTL--GPFGNPSKWGIYGGRLHIF 318
            PV  G DVV Y+ L   ++ VLGSP   S+   Y F+FST EN   FE+    YVPAWGGFCSYGV+ E  WT  T+  G + +   W +  GRL +F
Sbjct:   93 PVASGYDVVAYFDLDPLSDGVLGSPEFTSIYKGYTFYFSTRENQDRFESSPETYVPAWGGFCSYGVSQESWWTAETMRAGVYAS-GAWRVVDGRLFLF 189          
BLAST of mRNA_E-fasciculatus_F_contig13060.2321.1 vs. uniprot
Match: D7FW15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW15_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 7.650e-20
Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = 1
Query:    1 SVECAGQFDLPVLGGVDVVEYWRLPLAAEPVLGSPNLMSVLGD-YRFFFSTAENLRVFENDKLKYVPAWGGFCSYGVANEPVWTHTTLGPFGNPSKWGIYGGRLHIFR 321
            + EC G    P + G D+V Y  L      V G        G  Y F FST EN   FE+D  +Y+PAWGGFC +G+++E VW    LGP  NP  W I   RL++FR
Sbjct:  101 TAECTGDTSKPAVEGFDLVAYRSLQPGTHGVRGLWEFSVQYGQGYTFLFSTLENKLEFESDPERYLPAWGGFCGFGISHEVVWGPDVLGPPSNPDFWLIEDDRLYLFR 208          
BLAST of mRNA_E-fasciculatus_F_contig13060.2321.1 vs. uniprot
Match: D7G5N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N6_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 3.480e-19
Identity = 46/106 (43.40%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    7 ECAGQFDLPVLGGVDVVEYWRLPLAAEPVLGSPNLMSVLGDYRFFFSTAENLRVFENDKLKYVPAWGGFCSYGVANEPVWTHTTLGPFGNPSKWGIYGGR-LHIFR 321
            EC G    PVL G DVV Y+ L      + G          Y F F++A+N  +FE   L Y+PAWGGFC+YG+A E  WT +TLGP  +P+ W I     L IFR
Sbjct:   74 EC-GTSTEPVLNGADVVSYFSLKEGEAAMYGFEEYPVKYNGYTFLFASAQNKALFEASPLDYIPAWGGFCAYGIAAEDWWTVSTLGPPSDPNSWLITDDNVLRIFR 178          
BLAST of mRNA_E-fasciculatus_F_contig13060.2321.1 vs. uniprot
Match: A0A7S2US34_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US34_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.390e-17
Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 1
Query:    1 SVECAGQFDLPVLGGVDVVEYWRLPLAAEPVLGSPNLMSVL----GDYRFFFSTAENLRVFENDKLKYVPAWGGFCSYGVANEPVWTHTT----LGPFGNPSKWGIYGGRLHIF 318
             + C    D PVLGGVDVV Y ++P+ +  V+GS +  S +    GD+ F+FST ENL +FE D   Y P  GGF +  +++   +  T     LGP  + ++W +  G+L++F
Sbjct:  106 KLACCTAQDRPVLGGVDVVSYHQIPMGSPSVMGSADFQSTISTSNGDFIFYFSTQENLELFEKDHWSYAPEMGGFDAQAISSNDEYGATDVKEQLGPQVDVNQWAVIHGKLYLF 219          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13060.2321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGH5_9PHAE1.050e-5177.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW13_ECTSI4.240e-4561.47YHS domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7FW14_ECTSI5.000e-3087.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UVA0_HETAK7.470e-2346.23Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3JR48_9STRA4.880e-2244.34Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6H5JXZ9_9PHAE7.140e-2142.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3UXT1_HETAK5.340e-2046.94Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FW15_ECTSI7.650e-2041.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5N6_ECTSI3.480e-1943.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2US34_9STRA3.390e-1736.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13060contigE-fasciculatus_F_contig13060:129..1398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue2.7e-20
Seed eggNOG ortholog44056.XP_009035534.1
EggNOG OGs2D48G@1,2SU9E@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002960.1
Exons3
Model size327
Cds size327
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13060.2321.1prot_E-fasciculatus_F_contig13060.2321.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13060 129..1398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927811.096742-CDS-E-fasciculatus_F_contig13060:128..2321622927811.096742-CDS-E-fasciculatus_F_contig13060:128..232Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13060 129..232 -
1695995704.5629396-CDS-E-fasciculatus_F_contig13060:128..2321695995704.5629396-CDS-E-fasciculatus_F_contig13060:128..232Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13060 129..232 -
1622927811.113238-CDS-E-fasciculatus_F_contig13060:664..7131622927811.113238-CDS-E-fasciculatus_F_contig13060:664..713Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13060 665..713 -
1695995704.5746956-CDS-E-fasciculatus_F_contig13060:664..7131695995704.5746956-CDS-E-fasciculatus_F_contig13060:664..713Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13060 665..713 -
1622927811.1247606-CDS-E-fasciculatus_F_contig13060:1224..13981622927811.1247606-CDS-E-fasciculatus_F_contig13060:1224..1398Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13060 1225..1398 -
1695995704.5843472-CDS-E-fasciculatus_F_contig13060:1224..13981695995704.5843472-CDS-E-fasciculatus_F_contig13060:1224..1398Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13060 1225..1398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13060.2321.1

>prot_E-fasciculatus_F_contig13060.2321.1 ID=prot_E-fasciculatus_F_contig13060.2321.1|Name=mRNA_E-fasciculatus_F_contig13060.2321.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=109bp
SVECAGQFDLPVLGGVDVVEYWRLPLAAEPVLGSPNLMSVLGDYRFFFST
AENLRVFENDKLKYVPAWGGFCSYGVANEPVWTHTTLGPFGNPSKWGIYG
GRLHIFRR*
back to top

mRNA from alignment at E-fasciculatus_F_contig13060:129..1398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13060.2321.1 ID=mRNA_E-fasciculatus_F_contig13060.2321.1|Name=mRNA_E-fasciculatus_F_contig13060.2321.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1270bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13060:129..1398- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAGTGGAATGCGCAGGGCAGTTCGACCTACCCGTTCTGGGTGGCGTGGA CGTCGTAGAGTATTGGAGATTGCCGCTTGCAGCGGAACCAGTCTTGGGAA GTCCGAACCTGATGTCGGTGTTAGGAGACTACCGGTTCTTCTTTTCGACG GCGGAAAACCTCCGGGTGTTTGAGGTAAGAGGTTCTCCACTGCGCTACAT TAGCTAGGCTTTTGCAGATTTTGCGTTTCGATTTGCATTTCGAAACATCA CGGTAACCCCCCGACCCTCCTCCTCTCGCTCCTTCCTAGACGCTCGCTAC GAATAAATGTGGTAAGCAGCTGGGTTTTGGTGGCTGGCCTAGTGGCGTGT GTATTCCGTTCGGATCAAACGGACGTTGCTTGCTTCGACAAAGGGCGTCC TGTATGTAAATACTCTCCCCTGCTGCTCTACCACCACTTTTCGTGGTGAT TTTCCTCAACCCCCACGCCTGGTAAGTGCGTCCATGCACGGGCGCTTTGT CATATATCCTACGTACGACGGCACCGGCGCGCATACAAGGTCTACACAAT CAATCGTGGCTCTTCATTGCATACCGCAACTTTCTTGCTGCATGGCATTT CTTGCAAACGCCAGCTGGTGGTTCTTACACCCCCCCCCCCCCCCCCCCCC CCCCCCCCGTCAATCGCACCCTCCATTTCTCTCAGAATGACAAGCTCAAG TACGTCCCAGCCTGGGGAGGCTTCTGCTCTTACGGTAAGCTTTAGCGCGC GCGGGGCTCGATCAAACACGCCTAACGTTGCCGTGTTCGGGGAGAAAGAA GAAGGGCCGCAAACCGTAGCGCGCGCTGGAAGCCAGCAGCCAAGGCAGCA TGTGCAATGGACAGATAAGAATAATGACGAATAAGGTCATCTCGCAGATA TGGCACGCGGCGTTCGTCCTACGAAAACTTACAGCAGACCCCGTGGATGT TTGAATTTTGTTCCGTCCCCCAACCCTAATACGACTTTTTGCACGCGACG TCTCCTCCGGGGCACAGGTAACAACTCTCCCGTATGTGTGCCATGCGGTT TTTGTCACAATCTTGGTAAATAAAAAATGCCTTGCCACACAACAATCAAT GATGTGTCCTGTTTTTGTGTGTGTGTGTGCCTGTCCTGAACAAACGGTGG TGCCTCGATGTTCCAGGCGTCGCGAACGAGCCAGTTTGGACGCACACGAC CCTGGGCCCGTTTGGGAATCCCTCGAAGTGGGGAATTTATGGCGGCCGCC TACACATCTTCCGAAGGTAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13060:129..1398-

>mRNA_E-fasciculatus_F_contig13060.2321.1 ID=mRNA_E-fasciculatus_F_contig13060.2321.1|Name=mRNA_E-fasciculatus_F_contig13060.2321.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13060:129..1398- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAGTGGAATGCGCAGGGCAGTTCGACCTACCCGTTCTGGGTGGCGTGGA
CGTCGTAGAGTATTGGAGATTGCCGCTTGCAGCGGAACCAGTCTTGGGAA
GTCCGAACCTGATGTCGGTGTTAGGAGACTACCGGTTCTTCTTTTCGACG
GCGGAAAACCTCCGGGTGTTTGAGTCAGTGGAATGCGCAGGGCAGTTCGA
CCTACCCGTTCTGGGTGGCGTGGACGTCGTAGAGTATTGGAGATTGCCGC
TTGCAGCGGAACCAGTCTTGGGAAGTCCGAACCTGATGTCGGTGTTAGGA
GACTACCGGTTCTTCTTTTCGACGGCGGAAAACCTCCGGGTGTTTGAGAA
TGACAAGCTCAAGTACGTCCCAGCCTGGGGAGGCTTCTGCTCTTACGAAT
GACAAGCTCAAGTACGTCCCAGCCTGGGGAGGCTTCTGCTCTTACGGCGT
CGCGAACGAGCCAGTTTGGACGCACACGACCCTGGGCCCGTTTGGGAATC
CCTCGAAGTGGGGAATTTATGGCGGCCGCCTACACATCTTCCGAAGGTAA
GCGTCGCGAACGAGCCAGTTTGGACGCACACGACCCTGGGCCCGTTTGGG
AATCCCTCGAAGTGGGGAATTTATGGCGGCCGCCTACACATCTTCCGAAG
GTAA
back to top