prot_E-fasciculatus_F_contig13058.2318.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig13058.2318.1
Unique Nameprot_E-fasciculatus_F_contig13058.2318.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length220
Homology
BLAST of mRNA_E-fasciculatus_F_contig13058.2318.1 vs. uniprot
Match: D8LGR2_ECTSI (Ribosomal protein L25, Ctc-form n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGR2_ECTSI)

HSP 1 Score: 329 bits (843), Expect = 3.730e-111
Identity = 182/221 (82.35%), Postives = 190/221 (85.97%), Query Frame = 0
Query:    4 AGKVPGVVYSNSDNRGDSARSGGRGIGRPADDPILVKVDKIVLDREIRRLNASFDNTVYDLVIEGETSSGDDAADDGIEVTVADPGAGGNRD-QXXXXXXXXXXXXXXXXXXXXQKPERRELVLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINNDLNENFRKGAYIRR-RTHQHILLPEDPEMVPKWLYLDLEFVRSGSK--VSQLPCPESLPRH 220
            AGKVPGVVYSNSDNRG S+R GG G+GRPADDPILVKVDKIVLDRE+RRLNASFDNTVYDLVIEGETSSGDDAADDGIEVTV DPGAGG+R  +              XXXXXX  PERRELVLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFIN+DLNENFRKGAYIRR +THQHILLPEDPEMVPKWLYLDLEFVRSGSK  VS L  PE +  H
Sbjct:   34 AGKVPGVVYSNSDNRGHSSRPGG-GVGRPADDPILVKVDKIVLDREVRRLNASFDNTVYDLVIEGETSSGDDAADDGIEVTVTDPGAGGDRGKEEEEGVSAGEGGVEGXXXXXXXXPERRELVLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINSDLNENFRKGAYIRRLKTHQHILLPEDPEMVPKWLYLDLEFVRSGSKLRVSDLMMPEGILLH 253          
BLAST of mRNA_E-fasciculatus_F_contig13058.2318.1 vs. uniprot
Match: A0A397C844_9STRA (Ribosomal_TL5_C domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C844_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.570e-6
Identity = 30/84 (35.71%), Postives = 47/84 (55.95%), Query Frame = 0
Query:  125 VLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINNDLNENFRKGAYIRRRTHQHILLPEDPEMVPKWLYLDLEFVRSGSKV 208
            VL   + LHPV     SVN++RYK GRK  IP+ F+N + +   ++G YI    H+ I      E++P  LY+D+  +  G ++
Sbjct:  104 VLLRDATLHPVTDIPQSVNFLRYKPGRKVHIPLDFLNQEGSPGLKRGGYINNVYHE-IPCTIASEVIPAKLYVDVNGMHVGERI 186          
BLAST of mRNA_E-fasciculatus_F_contig13058.2318.1 vs. uniprot
Match: A0A3R6YZB1_9STRA (Ribosomal_TL5_C domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YZB1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.010e-6
Identity = 29/84 (34.52%), Postives = 46/84 (54.76%), Query Frame = 0
Query:  125 VLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINNDLNENFRKGAYIRRRTHQHILLPEDPEMVPKWLYLDLEFVRSGSKV 208
            VL   + LHPV     SVN++RYK GRK  IP+ F+N + +   ++G YI    H+ I      E +P  L++D+  +  G ++
Sbjct:  103 VLLRDATLHPVTDVPQSVNFLRYKPGRKVHIPLDFLNQESSPGLKRGGYINNVYHE-IPCTIASEAIPTKLFVDVNGMHVGQRI 185          
BLAST of mRNA_E-fasciculatus_F_contig13058.2318.1 vs. uniprot
Match: F0WKB2_9STRA (50S ribosomal protein L25 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WKB2_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.530e-5
Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 0
Query:  124 LVLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINNDLNENFRKGAYIRRRTHQHILLPEDPEMVPKWLYLDLEFVRSGSK 207
            L +    + HPV    L+VN+IRYK GRK  IPI +IN + +   ++G YI    H+ +    + E VPK L +D+  +   SK
Sbjct:  113 LAIMRDVQFHPVTDIPLTVNFIRYKNGRKVSIPITYINEEGSPGIKRGGYINHIYHE-VECYINTEQVPKTLEIDVNGLDVDSK 195          
BLAST of mRNA_E-fasciculatus_F_contig13058.2318.1 vs. uniprot
Match: A0A485LRJ8_9STRA (Aste57867_24188 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRJ8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.520e-5
Identity = 28/84 (33.33%), Postives = 45/84 (53.57%), Query Frame = 0
Query:  125 VLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINNDLNENFRKGAYIRRRTHQHILLPEDPEMVPKWLYLDLEFVRSGSKV 208
            VL     LHPV    L+VN++RYK GRK  IP+ ++N + +   ++G YI    H  I      E +P  L++D+  +  G ++
Sbjct:  105 VLLRDVTLHPVTDVPLTVNFLRYKPGRKVHIPLDYLNTEGSPGLKRGGYINNVRHD-IPCTIASEEIPAKLFVDVNGMHVGERI 187          
BLAST of mRNA_E-fasciculatus_F_contig13058.2318.1 vs. uniprot
Match: A0A024G2B8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G2B8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.130e-5
Identity = 30/84 (35.71%), Postives = 46/84 (54.76%), Query Frame = 0
Query:  124 LVLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINNDLNENFRKGAYIRRRTHQHILLPEDPEMVPKWLYLDLEFVRSGSK 207
            L +    + HPV    L+VN+IRYK GRK  IPI +IN + +   ++G YI    H+ +    + + VPK L +D+  +   SK
Sbjct:  825 LAIMRDVQFHPVTDLPLTVNFIRYKHGRKVSIPITYINEEGSPGLKRGGYINHICHE-VECYVNTDQVPKTLEIDVNGLDVDSK 907          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13058.2318.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LGR2_ECTSI3.730e-11182.35Ribosomal protein L25, Ctc-form n=2 Tax=Ectocarpus... [more]
A0A397C844_9STRA1.570e-635.71Ribosomal_TL5_C domain-containing protein n=4 Tax=... [more]
A0A3R6YZB1_9STRA4.010e-634.52Ribosomal_TL5_C domain-containing protein n=2 Tax=... [more]
F0WKB2_9STRA1.530e-536.9050S ribosomal protein L25 putative n=1 Tax=Albugo ... [more]
A0A485LRJ8_9STRA3.520e-533.33Aste57867_24188 protein n=1 Tax=Aphanomyces stella... [more]
A0A024G2B8_9STRA4.130e-535.71Cleavage and polyadenylation specificity factor su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13058contigE-fasciculatus_F_contig13058:336..3586 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13058.2318.1mRNA_E-fasciculatus_F_contig13058.2318.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig13058 336..3586 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig13058.2318.1 ID=prot_E-fasciculatus_F_contig13058.2318.1|Name=mRNA_E-fasciculatus_F_contig13058.2318.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=220bp
LSAAGKVPGVVYSNSDNRGDSARSGGRGIGRPADDPILVKVDKIVLDREI
RRLNASFDNTVYDLVIEGETSSGDDAADDGIEVTVADPGAGGNRDQEEEE
GASAGEGGVKGGVQQQQKPERRELVLANQSRLHPVFRTLLSVNWIRYKAG
RKYPIPIKFINNDLNENFRKGAYIRRRTHQHILLPEDPEMVPKWLYLDLE
FVRSGSKVSQLPCPESLPRH
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