mRNA_E-fasciculatus_F_contig13050.2313.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13050.2313.1
Unique NamemRNA_E-fasciculatus_F_contig13050.2313.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13050.2313.1 vs. uniprot
Match: A0A6H5KDR8_9PHAE (Peptidase_M14 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDR8_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.730e-24
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 1
Query:    1 LARLALTRSTVIMPMANAIGYYNTERYENGMDPNRDFPYSQHPDRCMTTITARQ 162
            LARLALTRSTVIMPMAN+IGYYNT+R+ENGMDPNRDFPY Q P  CMTTITARQ
Sbjct:  103 LARLALTRSTVIMPMANSIGYYNTDRWENGMDPNRDFPYGQMPQHCMTTITARQ 156          
BLAST of mRNA_E-fasciculatus_F_contig13050.2313.1 vs. uniprot
Match: A0A812J4N1_9DINO (Pet127 protein (Fragment) n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812J4N1_9DINO)

HSP 1 Score: 73.6 bits (179), Expect = 7.250e-14
Identity = 36/53 (67.92%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    7 RLALTRSTVIMPMANAIGYYNTERYENGMDPNRDFPYSQHPDRCMTTITARQV 165
            RL   RST +MPM NA GY N +R ENGMDPNRDFPY Q P RCM T TAR V
Sbjct:  818 RLVDGRSTWLMPMTNAHGYANYKREENGMDPNRDFPYLQMPQRCMQTQTARAV 870          
BLAST of mRNA_E-fasciculatus_F_contig13050.2313.1 vs. uniprot
Match: A0A812RBD3_9DINO (Pet127 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812RBD3_9DINO)

HSP 1 Score: 73.6 bits (179), Expect = 7.250e-14
Identity = 36/53 (67.92%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    7 RLALTRSTVIMPMANAIGYYNTERYENGMDPNRDFPYSQHPDRCMTTITARQV 165
            RL   RST +MPM NA GY N +R ENGMDPNRDFPY Q P RCM T TAR V
Sbjct:  825 RLVDGRSTWLMPMTNAHGYANYKREENGMDPNRDFPYLQMPQRCMQTQTARAV 877          
BLAST of mRNA_E-fasciculatus_F_contig13050.2313.1 vs. uniprot
Match: A0A812PG50_9DINO (UVR3 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812PG50_9DINO)

HSP 1 Score: 73.6 bits (179), Expect = 7.260e-14
Identity = 36/53 (67.92%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    7 RLALTRSTVIMPMANAIGYYNTERYENGMDPNRDFPYSQHPDRCMTTITARQV 165
            RL   RST +MPM NA GY N +R ENGMDPNRDFPY Q P RCM T TAR V
Sbjct: 1371 RLVDGRSTWLMPMTNAHGYANYKREENGMDPNRDFPYLQMPQRCMQTQTARAV 1423          
BLAST of mRNA_E-fasciculatus_F_contig13050.2313.1 vs. uniprot
Match: A0A7S4JUS9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JUS9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.180e-12
Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    1 LARLALTRSTVIMPMANAIGYYNTERYENGMDPNRDFPYSQ-HPDRCMTTITARQV 165
            LARLA TR  VI+P ANA+GY    R ENG+DPNRDFPY Q  P +CM TI  R +
Sbjct:  316 LARLATTRRIVIVPAANALGYEFNRREENGIDPNRDFPYDQTDPSKCMRTIAGRTI 371          
BLAST of mRNA_E-fasciculatus_F_contig13050.2313.1 vs. uniprot
Match: A0A7S4NAH1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NAH1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.200e-12
Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    1 LARLALTRSTVIMPMANAIGYYNTERYENGMDPNRDFPYSQ-HPDRCMTTITARQV 165
            LARLA TR  VI+P ANA+GY    R ENG+DPNRDFPY Q  P +CM TI  R +
Sbjct:  314 LARLATTRRIVIVPAANALGYEFNRREENGIDPNRDFPYDQTDPSKCMRTIAGRTI 369          
BLAST of mRNA_E-fasciculatus_F_contig13050.2313.1 vs. uniprot
Match: A0A7S0Q7Z3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q7Z3_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 3.050e-12
Identity = 32/53 (60.38%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    7 RLALTRSTVIMPMANAIGYYNTERYENGMDPNRDFPYSQHPDRCMTTITARQV 165
            RL  TR+ +IMPM NAIG     R ENG+DPNRDFP+ Q P  CM TI AR V
Sbjct:  190 RLVDTRNVLIMPMTNAIGVAQKTRAENGIDPNRDFPFDQSPSLCMQTIAARSV 242          
BLAST of mRNA_E-fasciculatus_F_contig13050.2313.1 vs. uniprot
Match: A0A7S4ETP0_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ETP0_CHRCT)

HSP 1 Score: 68.6 bits (166), Expect = 3.940e-12
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    7 RLALTRSTVIMPMANAIGYYNTERYENGMDPNRDFPYSQHPDRCMTTITARQV 165
            RL  +R T+IMPM NA+G  N  R ENG+DPNRDFP+ Q P  CM TI AR +
Sbjct:  110 RLVDSRVTLIMPMTNAVGVANKVRTENGIDPNRDFPFDQLPTACMQTIAARSI 162          
BLAST of mRNA_E-fasciculatus_F_contig13050.2313.1 vs. uniprot
Match: A0A7S2RZJ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RZJ4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.160e-12
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    1 LARLALTRSTVIMPMANAIGYYNTERYENGMDPNRDFPYS-QHPDRCMTTITARQV 165
            +ARL  TR  VI+P ANA+GYY   R ENG+DPNRDFP+  + P +CM TI  R +
Sbjct:  195 MARLVQTRRIVIVPTANALGYYQNVREENGVDPNRDFPFEVEDPSKCMQTIAGRTI 250          
BLAST of mRNA_E-fasciculatus_F_contig13050.2313.1 vs. uniprot
Match: A0A1Z5JJR0_FISSO (Peptidase_M14 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJR0_FISSO)

HSP 1 Score: 68.2 bits (165), Expect = 5.710e-12
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1
Query:    1 LARLALTRSTVIMPMANAIGYYNTERYENGMDPNRDFPYS-QHPDRCMTTITAR 159
            LARL  TR  V++P ANA+GYY +ER ENG+D NRDFP+    P +CMTTI  R
Sbjct:  206 LARLLSTRRLVVVPTANALGYYRSERTENGVDANRDFPFDLTDPKQCMTTIAGR 259          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13050.2313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KDR8_9PHAE3.730e-2487.04Peptidase_M14 domain-containing protein n=2 Tax=Ec... [more]
A0A812J4N1_9DINO7.250e-1467.92Pet127 protein (Fragment) n=3 Tax=Symbiodinium Tax... [more]
A0A812RBD3_9DINO7.250e-1467.92Pet127 protein n=1 Tax=Symbiodinium sp. CCMP2592 T... [more]
A0A812PG50_9DINO7.260e-1467.92UVR3 protein n=2 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A7S4JUS9_9STRA1.180e-1260.71Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A7S4NAH1_9STRA1.200e-1260.71Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0Q7Z3_9EUKA3.050e-1260.38Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S4ETP0_CHRCT3.940e-1258.49Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A7S2RZJ4_9STRA4.160e-1255.36Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A1Z5JJR0_FISSO5.710e-1259.26Peptidase_M14 domain-containing protein n=1 Tax=Fi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13050contigE-fasciculatus_F_contig13050:1256..1821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue1.5e-19
Seed eggNOG ortholog2880.D7FNB3
EggNOG free text desc.Zinc carboxypeptidase
EggNOG OGs28MYZ@1,2QUHR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927810.4914272-CDS-E-fasciculatus_F_contig13050:1255..13491622927810.4914272-CDS-E-fasciculatus_F_contig13050:1255..1349Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13050 1256..1349 -
1695995704.2686534-CDS-E-fasciculatus_F_contig13050:1255..13491695995704.2686534-CDS-E-fasciculatus_F_contig13050:1255..1349Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13050 1256..1349 -
1622927810.5185335-CDS-E-fasciculatus_F_contig13050:1744..18211622927810.5185335-CDS-E-fasciculatus_F_contig13050:1744..1821Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13050 1745..1821 -
1695995704.281331-CDS-E-fasciculatus_F_contig13050:1744..18211695995704.281331-CDS-E-fasciculatus_F_contig13050:1744..1821Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13050 1745..1821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13050.2313.1prot_E-fasciculatus_F_contig13050.2313.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13050 1256..1821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13050.2313.1

>prot_E-fasciculatus_F_contig13050.2313.1 ID=prot_E-fasciculatus_F_contig13050.2313.1|Name=mRNA_E-fasciculatus_F_contig13050.2313.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=57bp
LARLALTRSTVIMPMANAIGYYNTERYENGMDPNRDFPYSQHPDRCMTTI
TARQVV*
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mRNA from alignment at E-fasciculatus_F_contig13050:1256..1821-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13050.2313.1 ID=mRNA_E-fasciculatus_F_contig13050.2313.1|Name=mRNA_E-fasciculatus_F_contig13050.2313.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=566bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13050:1256..1821- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGGCACGGCTTGCCCTGACGCGAAGCACCGTGATCATGCCCATGGCGAA TGCCATCGGGTACTACAACACGGAGAGGTGCGGCTTAAGGGAGGAGGATG CCCGCCTACCAGATAGACGCGAAGAAAGCGTTCGACGTGCATGGGGTTAC TGCGTCGCCCTCCATTTAGCCCACCGACACTGTTTCTTCCTGTTTTCAAC AACCTTCCACGTTGTACTCAAAACCCGCTTTGGGCGTAGCCCCGTACCGT ACCGGGTAGTACCGGGTAGAGGGCGGTATTCCGTGTTGAAGGAACGGCTC TGCGGTACAGGCCTTCCTCGCCTTGTCCACCCTATCCCGCTCGGCAGGCA GCGTGAGTACTTGACATCCACCGTGAGCGTCTCTGCTACGCACTGAATGC CGCCTCCTTTGTCTTCTTTGCCCCCCGCGTCGTGCGACGTCCGGCAACAT GCCAACTGGTGGCCTTGCGAAGATATGAGAACGGGATGGATCCGAACCGC GACTTCCCGTACAGCCAGCACCCTGACAGGTGCATGACGACCATCACCGC GAGGCAAGTGGTTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13050:1256..1821-

>mRNA_E-fasciculatus_F_contig13050.2313.1 ID=mRNA_E-fasciculatus_F_contig13050.2313.1|Name=mRNA_E-fasciculatus_F_contig13050.2313.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13050:1256..1821- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGGCACGGCTTGCCCTGACGCGAAGCACCGTGATCATGCCCATGGCGAA
TGCCATCGGGTACTACAACACGGAGAGTTGGCACGGCTTGCCCTGACGCG
AAGCACCGTGATCATGCCCATGGCGAATGCCATCGGGTACTACAACACGG
AGAGATATGAGAACGGGATGGATCCGAACCGCGACTTCCCGTACAGCCAG
CACCCTGACAGGTGCATGACGACCATCACCGCGAGGCAAGTGGTTTGAAT
ATGAGAACGGGATGGATCCGAACCGCGACTTCCCGTACAGCCAGCACCCT
GACAGGTGCATGACGACCATCACCGCGAGGCAAGTGGTTTGA
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