mRNA_E-fasciculatus_F_contig12986.2261.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12986.2261.1
Unique NamemRNA_E-fasciculatus_F_contig12986.2261.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12986.2261.1 vs. uniprot
Match: D7FQ17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ17_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 7.510e-62
Identity = 109/119 (91.60%), Postives = 111/119 (93.28%), Query Frame = 1 
Query:    1 MLGDLFSPGDFGAPDGGGFKDEGGGKPGITLPEFRPTGDAFTGDIQMPVLPLKSALQRTRAAQQRAAGPGGVGDEGAGLLHNEAYYGDEDEGVGTAFAQSEEKALVRPKYVRKQQGDYA 357
            MLGDLFSPGDFGA DGGGFKDEGGGK GI LPEFRPTGDAFTGDIQMPVLPLKSALQRTRAAQQR AGPGG G+EGAGLL+NEAY GD DEGVG AFAQSEEKALVRPKYVRKQQGDYA
Sbjct: 2260 MLGDLFSPGDFGASDGGGFKDEGGGKQGIILPEFRPTGDAFTGDIQMPVLPLKSALQRTRAAQQRGAGPGGGGNEGAGLLNNEAYDGDGDEGVGAAFAQSEEKALVRPKYVRKQQGDYA 2378
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BLAST of mRNA_E-fasciculatus_F_contig12986.2261.1 vs. uniprot
Match: A0A6H5KQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 8.400e-13
Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:  223 EGAGLLHNEAYYGDEDEGVGTAFAQSEEKALVRPKYVRKQQGDYA 357
            +GA LLHNE Y GD DEGVG  FAQSEEKALVRPKYVRKQQGD A
Sbjct:  555 QGASLLHNEEYDGDGDEGVGATFAQSEEKALVRPKYVRKQQGDDA 599
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12986.2261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ17_ECTSI7.510e-6291.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQM6_9PHAE8.400e-1382.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12986contigE-fasciculatus_F_contig12986:1148..2690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.5
Seed ortholog evalue6.9e-54
Seed eggNOG ortholog2880.D7FQ17
KEGG rclassRC00005,RC00059
KEGG koko:K08582,ko:K09667
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,ko04931,map00514,map04931
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG0045@1,KOG0045@2759,KOG4626@2759
EC2.4.1.255
COG Functional cat.O
CAZyGT41
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01003,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size358
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12986.2261.1prot_E-fasciculatus_F_contig12986.2261.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12986 1148..2690 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927802.5009675-CDS-E-fasciculatus_F_contig12986:1147..12791622927802.5009675-CDS-E-fasciculatus_F_contig12986:1147..1279Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12986 1148..1279 -
1695995701.153482-CDS-E-fasciculatus_F_contig12986:1147..12791695995701.153482-CDS-E-fasciculatus_F_contig12986:1147..1279Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12986 1148..1279 -
1622927802.528851-CDS-E-fasciculatus_F_contig12986:1729..18421622927802.528851-CDS-E-fasciculatus_F_contig12986:1729..1842Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12986 1730..1842 -
1695995701.1657007-CDS-E-fasciculatus_F_contig12986:1729..18421695995701.1657007-CDS-E-fasciculatus_F_contig12986:1729..1842Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12986 1730..1842 -
1622927802.551116-CDS-E-fasciculatus_F_contig12986:2578..26901622927802.551116-CDS-E-fasciculatus_F_contig12986:2578..2690Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12986 2579..2690 -
1695995701.175964-CDS-E-fasciculatus_F_contig12986:2578..26901695995701.175964-CDS-E-fasciculatus_F_contig12986:2578..2690Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12986 2579..2690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12986.2261.1

>prot_E-fasciculatus_F_contig12986.2261.1 ID=prot_E-fasciculatus_F_contig12986.2261.1|Name=mRNA_E-fasciculatus_F_contig12986.2261.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=119bp
MLGDLFSPGDFGAPDGGGFKDEGGGKPGITLPEFRPTGDAFTGDIQMPVL
PLKSALQRTRAAQQRAAGPGGVGDEGAGLLHNEAYYGDEDEGVGTAFAQS
EEKALVRPKYVRKQQGDYA
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mRNA from alignment at E-fasciculatus_F_contig12986:1148..2690-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12986.2261.1 ID=mRNA_E-fasciculatus_F_contig12986.2261.1|Name=mRNA_E-fasciculatus_F_contig12986.2261.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1543bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12986:1148..2690- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTTGGGGACCTTTTTAGTCCCGGAGATTTTGGAGCTCCGGACGGCGG
CGGGTTTAAAGATGAAGGGGGGGGGAAGCCAGGAATAACTCTACCAGAAT
TCCGCCCCACCGGTGAGTTGCCAGGCTAACCGTAAAGGGCAGGGTAAATG
CCCAGTCCGCGAGGTAGTCGTCCCGTAGCGCTGGTTTAACGGAAATGCGT
CCGAACATCAGAGAAATTACGTCGGGGCCATTAAGTTCCAGCGTATCGTA
AAACCCCATATCTCAATAACTCTTCTGAGCAAACGGCACAGGTAATGGAT
GCCTCGGGTTTATGATGCTGCTCGAGGCGTTGTTGCCCCTCTCATTGGTA
TTATTTCGCCCGGATACGAGCTTGGCTCCGGTGGTCTCACACCAAGATAT
GACCGTCTGGTTTGGAAAGAATGGATTGGTTTGGATCTTCTCTCGCCATT
CTAGAGCGCACACCGTCGCGCGGGATTGTCGATAGGGAGAGAGAGAAGGG
GGGGGGGAGAGCGAGAGATTTACGAGCGTCTGCGAAAGAAAGACACCTGC
AGACGTCGTATGGACACGAACCACAACGTAGATGTGTAGCTCGTTTCTAT
ACGAACCACGTTGGTGGCGCATGGTTGACGTTTCAACGAAGCCGAGAAGC
AATGCGTGAGGGGTCGTTTTGTGACGTTACGATAGGCGAAAGAAGCTCAA
GAGGAAAGCGGTAGACGTACACGGACACATTTTCAAACCAAAGCAATGTG
CGTAATGCTGCACACTTCGCTCTTCGCTCACCCGATAGCGCTCCGTTCCC
ATTCAGACCTAGTCGACCCCCCGACCATCCCCGTCATCCTCTATTCAGGC
GATGCCTTTACCGGCGATATCCAGATGCCGGTACTACCCCTCAAGAGCGC
TTTGCAGCGCACGCGTGCGGCTCAGCAGCGAGCAGCGGGACCGGGGGGAG
TTGGAGATGAGGTAGGGTCAGCAAGCCTCCACCTGTCATCGCACATCGTT
TGTACACGCTTTAGCTACCTCCTCATATGTCCCACGGAAAGATAGCGACT
AGCACCGTGGCACCGGAGGATAGTTGACTCTACCTTGGTACTTGGAGCTG
GTTCTTCTCGCGGTGGTGTACGTGATCTGCCCAGCACAAGTAACGAATGG
ACTTAAAAGGCGTGGAGTTGAGCCATCCACACACCAATCAGTGTGTTCAC
GCCAGTCACCGATATACGCGTCGACTTTTAGCGAAAATAGCGAGAATTAT
CACAAGCTCCTCATATGTAAAACAATCACAATCTCTTTTAGCAAGCCCTT
CGGGGAAGCTCTTCTAGCCTTCAACAGCTAAGCAATTTCCGCGAGAAGAG
TAACATGAGCATCAACCCAAACAAAGCACACACGAAAAGAATCTCCCAAT
CAAATCCACAGGGAGCGGGGCTGCTGCACAATGAAGCATACTACGGTGAC
GAGGACGAAGGGGTCGGGACGGCCTTCGCGCAGTCGGAGGAAAAGGCCCT
CGTCAGGCCCAAGTATGTGAGGAAGCAGCAGGGGGACTACGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12986:1148..2690-

>mRNA_E-fasciculatus_F_contig12986.2261.1 ID=mRNA_E-fasciculatus_F_contig12986.2261.1|Name=mRNA_E-fasciculatus_F_contig12986.2261.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=714bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12986:1148..2690- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTTGGGGACCTTTTTAGTCCCGGAGATTTTGGAGCTCCGGACGGCGG
CGGGTTTAAAGATGAAGGGGGGGGGAAGCCAGGAATAACTCTACCAGAAT
TCCGCCCCACCGATGCTTGGGGACCTTTTTAGTCCCGGAGATTTTGGAGC
TCCGGACGGCGGCGGGTTTAAAGATGAAGGGGGGGGGAAGCCAGGAATAA
CTCTACCAGAATTCCGCCCCACCGGCGATGCCTTTACCGGCGATATCCAG
ATGCCGGTACTACCCCTCAAGAGCGCTTTGCAGCGCACGCGTGCGGCTCA
GCAGCGAGCAGCGGGACCGGGGGGAGTTGGAGATGAGGCGATGCCTTTAC
CGGCGATATCCAGATGCCGGTACTACCCCTCAAGAGCGCTTTGCAGCGCA
CGCGTGCGGCTCAGCAGCGAGCAGCGGGACCGGGGGGAGTTGGAGATGAG
GGAGCGGGGCTGCTGCACAATGAAGCATACTACGGTGACGAGGACGAAGG
GGTCGGGACGGCCTTCGCGCAGTCGGAGGAAAAGGCCCTCGTCAGGCCCA
AGTATGTGAGGAAGCAGCAGGGGGACTACGCCGGAGCGGGGCTGCTGCAC
AATGAAGCATACTACGGTGACGAGGACGAAGGGGTCGGGACGGCCTTCGC
GCAGTCGGAGGAAAAGGCCCTCGTCAGGCCCAAGTATGTGAGGAAGCAGC
AGGGGGACTACGCC
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