mRNA_E-fasciculatus_F_contig12986.2260.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12986.2260.1
Unique NamemRNA_E-fasciculatus_F_contig12986.2260.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12986.2260.1 vs. uniprot
Match: D7FQ17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ17_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.510e-52
Identity = 96/112 (85.71%), Postives = 99/112 (88.39%), Query Frame = 1 
Query:    1 VALSRFLDGKGALGLLCRKCRRRKKIGAFEGGVDGEGEIGDGGVGYNTLPGSDGNGGXXXXXXXXEELGEERVDSLSFRRAFLEGYLLPHEYGACYGFAACVALTVVMGLLL 336
            VALSRFLDGKG+LG+LCRKCRRRKKIGAFEGGVDGEGEIG+  VGY TLPGSDGNGG        EELGE RVDSLSFRRAFLEGYLLPHEY ACYGFAACVALTVVMGLLL
Sbjct: 2405 VALSRFLDGKGSLGVLCRKCRRRKKIGAFEGGVDGEGEIGEXDVGYGTLPGSDGNGGGNHGDNADEELGEVRVDSLSFRRAFLEGYLLPHEYRACYGFAACVALTVVMGLLL 2516
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BLAST of mRNA_E-fasciculatus_F_contig12986.2260.1 vs. uniprot
Match: A0A6H5KQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM6_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.460e-45
Identity = 88/112 (78.57%), Postives = 92/112 (82.14%), Query Frame = 1 
Query:    1 VALSRFLDGKGALGLLCRKCRRRKKIGAFEGGVDGEGEIGDGGVGYNTLPGSDGNGGXXXXXXXXEELGEERVDSLSFRRAFLEGYLLPHEYGACYGFAACVALTVVMGLLL 336
            VALS+FLDGKG+LG+LCRKCRR+KKIGAFE GVDGEGEI        TLPGSD NGG        EELGE RVDSLSFRRAFLEGYLLPHEY ACYGFAACVALTVVMGLLL
Sbjct:  626 VALSQFLDGKGSLGVLCRKCRRKKKIGAFEDGVDGEGEIXXXXXXXGTLPGSDRNGGGNQGDNADEELGEVRVDSLSFRRAFLEGYLLPHEYRACYGFAACVALTVVMGLLL 737
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12986.2260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ17_ECTSI1.510e-5285.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQM6_9PHAE1.460e-4578.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12986contigE-fasciculatus_F_contig12986:161..1069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.0
Seed ortholog evalue2.5e-45
Seed eggNOG ortholog2880.D7FQ17
KEGG rclassRC00005,RC00059
KEGG koko:K08582,ko:K09667
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,ko04931,map00514,map04931
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG0045@1,KOG0045@2759,KOG4626@2759
EC2.4.1.255
COG Functional cat.O
CAZyGT41
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01003,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptidase C2, calpain, catalytic domain
Ec32 orthologEc-01_007845.1
Exons3
Model size339
Cds size336
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12986.2260.1prot_E-fasciculatus_F_contig12986.2260.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12986 162..1069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927802.4046323-CDS-E-fasciculatus_F_contig12986:161..2871622927802.4046323-CDS-E-fasciculatus_F_contig12986:161..287Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12986 162..287 -
1695995701.109795-CDS-E-fasciculatus_F_contig12986:161..2871695995701.109795-CDS-E-fasciculatus_F_contig12986:161..287Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12986 162..287 -
1622927802.4227693-CDS-E-fasciculatus_F_contig12986:526..6611622927802.4227693-CDS-E-fasciculatus_F_contig12986:526..661Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12986 527..661 -
1695995701.1224382-CDS-E-fasciculatus_F_contig12986:526..6611695995701.1224382-CDS-E-fasciculatus_F_contig12986:526..661Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12986 527..661 -
1622927802.4395256-CDS-E-fasciculatus_F_contig12986:994..10691622927802.4395256-CDS-E-fasciculatus_F_contig12986:994..1069Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12986 995..1069 -
1695995701.1408193-CDS-E-fasciculatus_F_contig12986:994..10691695995701.1408193-CDS-E-fasciculatus_F_contig12986:994..1069Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12986 995..1069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12986.2260.1

>prot_E-fasciculatus_F_contig12986.2260.1 ID=prot_E-fasciculatus_F_contig12986.2260.1|Name=mRNA_E-fasciculatus_F_contig12986.2260.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=112bp
VALSRFLDGKGALGLLCRKCRRRKKIGAFEGGVDGEGEIGDGGVGYNTLP
GSDGNGGGNGGDNADEELGEERVDSLSFRRAFLEGYLLPHEYGACYGFAA
CVALTVVMGLLL
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mRNA from alignment at E-fasciculatus_F_contig12986:161..1069-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12986.2260.1 ID=mRNA_E-fasciculatus_F_contig12986.2260.1|Name=mRNA_E-fasciculatus_F_contig12986.2260.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=909bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12986:161..1069- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGCTCTCAGCCGATTCCTGGATGGAAAGGGGGCCTTGGGCTTGCTGTG
TCGGAAGTGTCGCCGGAGAAAAAAGGTGAAGGCATGTCTGTTTGGTTTGG
CTTGGGTTTTGAGGCGTCGCCGCTCACGATTTCTGCAAGGGTGTAGGTCA
TCGCGGAGAAGAAAAAGCATAAGTCCCCTCTAAGCAATGTTTTTTCACTA
TCGTCATTGGCAGCAGAGACTCTTTGTGTTGTCGACGCTAGCAGCCTCGG
TACTGTGTGCCCATACAACAAATTTGTGGCCGTATCGACTGGCGTTGGGA
ATCAAAAACAAACCGCTTTGAAAACACCACAAATTTCACTCTGGGGGGTA
TGCTGCGAAAGCTAGCGACCAAACTGCCAAGCCTTCCTCGCGTTTGCCAT
CGGGACAGATTGGAGCTTTCGAGGGCGGCGTCGACGGTGAGGGAGAAATA
GGTGACGGAGGCGTCGGGTACAATACGCTTCCTGGCAGCGACGGGAACGG
TGGGGGCAACGGCGGGGACAACGCAGACGAGGAACTGGGCGAGGTGTGCG
TAGCTACCTATGTTTCTTTAGCCTAGCAAGTTGCACGTCTGGCAACGTCC
TCAGCACCCACATACCCGAGGTTGGAAGAGGAAGATCATACAGTGAGACT
CTCCTCACTCCCACTGAGACCGTTACCCCACAATCCATCGACTTGGATAA
ATGCTGTGCCTTCTCTAGATAGATGAATACCGACCCACTGGTATCACACA
ACAACGCACCACGTTGCTCCAAAATCAACCAGGAGCGAGTGGACAGCCTC
TCTTTCCGACGCGCGTTCCTGGAGGGCTATCTCTTGCCGCACGAGTACGG
GGCGTGCTACGGCTTCGCTGCGTGCGTGGCGCTTACCGTAGTGATGGGTC
TGCTGCTCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12986:161..1069-

>mRNA_E-fasciculatus_F_contig12986.2260.1 ID=mRNA_E-fasciculatus_F_contig12986.2260.1|Name=mRNA_E-fasciculatus_F_contig12986.2260.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=672bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12986:161..1069- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGCTCTCAGCCGATTCCTGGATGGAAAGGGGGCCTTGGGCTTGCTGTG
TCGGAAGTGTCGCCGGAGAAAAAAGGTGGCTCTCAGCCGATTCCTGGATG
GAAAGGGGGCCTTGGGCTTGCTGTGTCGGAAGTGTCGCCGGAGAAAAAAG
ATTGGAGCTTTCGAGGGCGGCGTCGACGGTGAGGGAGAAATAGGTGACGG
AGGCGTCGGGTACAATACGCTTCCTGGCAGCGACGGGAACGGTGGGGGCA
ACGGCGGGGACAACGCAGACGAGGAACTGGGCGAGATTGGAGCTTTCGAG
GGCGGCGTCGACGGTGAGGGAGAAATAGGTGACGGAGGCGTCGGGTACAA
TACGCTTCCTGGCAGCGACGGGAACGGTGGGGGCAACGGCGGGGACAACG
CAGACGAGGAACTGGGCGAGGAGCGAGTGGACAGCCTCTCTTTCCGACGC
GCGTTCCTGGAGGGCTATCTCTTGCCGCACGAGTACGGGGCGTGCTACGG
CTTCGCTGCGTGCGTGGCGCTTACCGTAGTGATGGGTCTGCTGCTCGAGC
GAGTGGACAGCCTCTCTTTCCGACGCGCGTTCCTGGAGGGCTATCTCTTG
CCGCACGAGTACGGGGCGTGCTACGGCTTCGCTGCGTGCGTGGCGCTTAC
CGTAGTGATGGGTCTGCTGCTC
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