mRNA_E-fasciculatus_F_contig12975.2253.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12975.2253.1
Unique NamemRNA_E-fasciculatus_F_contig12975.2253.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12975.2253.1 vs. uniprot
Match: D7FGR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR9_ECTSI)

HSP 1 Score: 432 bits (1111), Expect = 6.890e-149
Identity = 230/251 (91.63%), Postives = 235/251 (93.63%), Query Frame = 1 
Query:    1 VRSRDANVIQAGSVVGGSAMSRVLGRALKEEEGGGAXXXXXXXXXTATDGALAAVEEARRRFLPKMRKEASTPEGVYSAEDIAGPQELESMEREIDRAAEEIEGGMHQWAKDFAERSRESCPRFVGKRLTLLLDLGERKQKRRMLELLYLRHMCVFHHASALLKGTPAQLSSKLDIPEIVLRRLLEKFSVCEKKGAGGVASYVRTKTLKNQLVVHALCLALVLEGCRMEIGVLAEDFRLSTAEARSMLREL 753
            +RSRDANVIQAGSVVGGSAMSRVLGRALKEEEGGGA         TATDGALAAVEEARRRFLPKMR EASTPEGVYSA DIAG QELESMEREIDRAAE+IEGGMHQWAKDFAER RESCP FVGKRLTLLLDLGER QKRRMLELLYLRHMCVFHHASALLKGTPAQLS+KLDIPEIVLRRLLEKFSVCEKKGAGG A+YVRTKTLKNQLVVHALCLALVLEGCR+EIGVLAEDFRLSTAEARSMLREL
Sbjct:  184 IRSRDANVIQAGSVVGGSAMSRVLGRALKEEEGGGAGGVDGDP--TATDGALAAVEEARRRFLPKMRTEASTPEGVYSAGDIAGVQELESMEREIDRAAEQIEGGMHQWAKDFAERPRESCPHFVGKRLTLLLDLGERNQKRRMLELLYLRHMCVFHHASALLKGTPAQLSAKLDIPEIVLRRLLEKFSVCEKKGAGGTANYVRTKTLKNQLVVHALCLALVLEGCRLEIGVLAEDFRLSTAEARSMLREL 432
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BLAST of mRNA_E-fasciculatus_F_contig12975.2253.1 vs. uniprot
Match: A0A7S2CC15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CC15_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 7.620e-9
Identity = 52/184 (28.26%), Postives = 89/184 (48.37%), Query Frame = 1 
Query:  208 ASTPEGVYSAEDIAGPQELESMEREIDRAAEEIEGGMHQWAKDFAERSRESCPRFVGKRLTLLLDLGERKQKRRMLELLYLRHMCVFH--HASALLKGTPAQLSSKLDIPEIVLRRLLEKFSVCEKKGAG-GVASYVRTKTLKNQLVVHALCLALVLEGCRMEIGVLAEDFRLSTAEARSMLRE 750
            A  P  VY+ + I   +E + +  ++      + GG        ++   ES P FV  RL       E+K       L  LRH+   H  H S   K +  + +  + +PE+VL++LL+ F+V +      G  +Y  TKTLK++L++H L + L + GC +    L +D +   A+ R+ML++
Sbjct:    6 ADMPLEVYNIKAILNDEEWKQLGSQVSAV---MSGG------GLSDNVAESWPTFVVSRLKHAKTSSEKKL------LFLLRHLIALHRKHGSFGGKRSMMEEAKAIGMPEVVLKKLLDTFTVGQPSDRDDGKLTYRSTKTLKDKLMLHLLVVGLNVNGCVIPTADLVDDLQYPHAQLRNMLQQ 174
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12975.2253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FGR9_ECTSI6.890e-14991.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CC15_9STRA7.620e-928.26Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12975contigE-fasciculatus_F_contig12975:586..3395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score432.6
Seed ortholog evalue1.3e-118
Seed eggNOG ortholog2880.D7FGR9
Preferred namePOLR1E
KEGG rclassRC02795
KEGG koko:K03005
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
GOsGO:0000428,GO:0001179,GO:0001188,GO:0001650,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006360,GO:0006361,GO:0006362,GO:0006363,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0008361,GO:0009058,GO:0009059,GO:0009303,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0022607,GO:0030880,GO:0031974,GO:0031981,GO:0032535,GO:0032774,GO:0032991,GO:0034062,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0090066,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.transcription by RNA polymerase I
EggNOG OGsKOG4183@1,KOG4183@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase I associated factor, A49-like
Ec32 orthologEc-04_001110.1
Exons5
Model size753
Cds size753
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12975.2253.1prot_E-fasciculatus_F_contig12975.2253.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12975 586..3395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927801.6947298-CDS-E-fasciculatus_F_contig12975:585..6941622927801.6947298-CDS-E-fasciculatus_F_contig12975:585..694Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12975 586..694 +
1695995700.7225866-CDS-E-fasciculatus_F_contig12975:585..6941695995700.7225866-CDS-E-fasciculatus_F_contig12975:585..694Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12975 586..694 +
1622927801.7200167-CDS-E-fasciculatus_F_contig12975:1203..14031622927801.7200167-CDS-E-fasciculatus_F_contig12975:1203..1403Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12975 1204..1403 +
1695995700.7359884-CDS-E-fasciculatus_F_contig12975:1203..14031695995700.7359884-CDS-E-fasciculatus_F_contig12975:1203..1403Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12975 1204..1403 +
1622927801.7339866-CDS-E-fasciculatus_F_contig12975:2138..22671622927801.7339866-CDS-E-fasciculatus_F_contig12975:2138..2267Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12975 2139..2267 +
1695995700.7452307-CDS-E-fasciculatus_F_contig12975:2138..22671695995700.7452307-CDS-E-fasciculatus_F_contig12975:2138..2267Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12975 2139..2267 +
1622927801.7492685-CDS-E-fasciculatus_F_contig12975:2639..27591622927801.7492685-CDS-E-fasciculatus_F_contig12975:2639..2759Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12975 2640..2759 +
1695995700.7583115-CDS-E-fasciculatus_F_contig12975:2639..27591695995700.7583115-CDS-E-fasciculatus_F_contig12975:2639..2759Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12975 2640..2759 +
1622927801.7629828-CDS-E-fasciculatus_F_contig12975:3200..33951622927801.7629828-CDS-E-fasciculatus_F_contig12975:3200..3395Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12975 3201..3395 +
1695995700.775215-CDS-E-fasciculatus_F_contig12975:3200..33951695995700.775215-CDS-E-fasciculatus_F_contig12975:3200..3395Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12975 3201..3395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12975.2253.1

>prot_E-fasciculatus_F_contig12975.2253.1 ID=prot_E-fasciculatus_F_contig12975.2253.1|Name=mRNA_E-fasciculatus_F_contig12975.2253.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=251bp
VRSRDANVIQAGSVVGGSAMSRVLGRALKEEEGGGAGGEGAAGASTATDG
ALAAVEEARRRFLPKMRKEASTPEGVYSAEDIAGPQELESMEREIDRAAE
EIEGGMHQWAKDFAERSRESCPRFVGKRLTLLLDLGERKQKRRMLELLYL
RHMCVFHHASALLKGTPAQLSSKLDIPEIVLRRLLEKFSVCEKKGAGGVA
SYVRTKTLKNQLVVHALCLALVLEGCRMEIGVLAEDFRLSTAEARSMLRE
L
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mRNA from alignment at E-fasciculatus_F_contig12975:586..3395+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12975.2253.1 ID=mRNA_E-fasciculatus_F_contig12975.2253.1|Name=mRNA_E-fasciculatus_F_contig12975.2253.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2810bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12975:586..3395+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCAGATCTCGAGACGCTAACGTGATCCAGGCGGGTTCGGTGGTCGGGGG
CTCCGCTATGTCGCGCGTTCTGGGTAGGGCGTTGAAGGAAGAAGAGGGCG
GCGGAGCTGGTGAGCTGTCGTTGTTGCTGTTTTTTGGTTGCTCTTGTATT
CCTTTGGTGGTACTGTAGTGATGGTTTGTGGTGGTGGTAGCTGCTGCTGC
TGCTGCTGATGCTGATGCTCTTATCGTCGTAAAGTGTTGGAGGTTCTGTT
GTCATTGTTGTTTTTCGTGTTGTTTTGATTGTGGTGGTGATGGTGATGGT
GATGGTGATGGTGATGGTGTTGGTGATGGTGATGGTGGTGTGGTGGTGGG
TGTTGCCGCTGCTGCCCAAGCTGTATCGTTGCTGTTGTCAATGTCATGTC
TGTTTATTTATTGGAGCATTCCCTAACTTGCGGGCCCGTGCTGCTACATG
CGAGGCAGCGAGGGCGAGGGCGGCGCCGCCGCCGCTGAGCTGTGTCCTCT
GCACCCGTGTACAGTAGCTTCACGATTTTTCGTTTAGCCTCTGCCCTTGA
AACCGAGCATTTCTTACTATTTTGCGTGCTCGTGCTGCTGCTGCTGCTGC
TGCTTGCTGTACCCGCAGGCGGCGAGGGCGCCGCCGGCGCCTCCACCGCT
ACCGACGGCGCCTTAGCAGCGGTGGAAGAAGCACGCCGCCGTTTCCTCCC
CAAGATGCGGAAGGAGGCGTCCACGCCGGAGGGGGTGTACTCGGCCGAAG
ATATCGCGGGGCCCCAGGAGCTGGAGTCCATGGAGAGAGAGATCGACAGG
GCGGCCGAGGAAATTGAGGTGGGTGGGCGGTACGTCTGGATTTTTTCGGT
GGCGATGGTAGTACTGGGATGGGTTTTGATTGTGTTGTGGTGGGGTTTGG
TCACGACCGCTGTGTGGTGGGTATGGCGTGGTGGTGGGGTGGGTTGCGGT
TGCGGTTGTGGTGGCTATAAAGGCGTGGTGGTGGTGGTGGTGGTGATGGT
GATGGTGGTGGTGGTGCTGGGTTTCGATTGGGCGGTGGCGGCTGTGTGGG
GATGTAGCTACGATAAGCAGTGACAAACTTTATCACAGGTGTTTTAATTG
TTTTTTTTTATGCTGCTGATGATGGATACCACCCCCCCTCTCTAGCTGAC
CGCCTCCCCTTCCGTAAATCACTCTGTTTGGTAAACGAGCCAATGAATAG
ACGCACGAGGCCACCCAGGTACGTTTTTTCAACCAAAAAACTATTCCACA
CCTTCCACTCTAGTGCATCCCCCTCAAGCAAGATATTGTGCTCCGCTTGA
AGGTTACAACCTCTCTACCCTGTACGTTGTATTTTTTGCCCTTACACATA
TTCAAGACCCCCCAGACCCCCCCTCCTATGTGACCCTGAGTTGGGTCGTC
TAGCTAGTANNNNNNNNNNGGATGGGGGCCAGAGGGGCAGACGACAGAGT
CCAATAATTGGAGAAAAAAAAATGTACCCTCCACATACTCGTATACCCCC
TACAACATCTGGCTTGGGTCTCGGCGCGTATGTTTTTGTTTCCCTCGCTG
CAGGGGGGTATGCACCAGTGGGCAAAGGATTTCGCGGAGCGCTCTCGCGA
GAGCTGTCCTAGGTTCGTCGGCAAACGGCTGACGCTGCTCCTAGACCTAG
GGGAGAGGAAGCAGAAGAGAAGGATGCTCGAGGTATGTTGTTGCCGGTAC
AACTGTATTATAGTATGCATAGCTCTGAGGAACGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGCTTTGCTT
TGCTGTTGGATTATTGGTAGTGGTGTTGTTGTGTGGTGGTGGTAGTGCTG
TTGGCGGCAGCTACGCTACACAACGACCAAAAGGCGACAGCAGAGGTGAA
CAACGAGCAATATCTCACAACAACAGAGACCGCGCAACAACAGACAACCG
AAAACAATAGCGCTTGACCAAACGCACGTTGCATGCTTTCACTTGATCGT
GATTGTCTTTCCCGCGCACGGCGCTGCTGCTGTACCGCTCTATTATCATC
GCAGCTGCTGTACCTGCGGCACATGTGCGTGTTTCACCACGCTAGCGCCC
TTCTCAAGGGCACCCCGGCGCAGCTGTCCTCCAAGCTGGACATCCCCGAG
ATTGTACTGAGGCGTCTGCTCGAGGTAGGCTGTTGGTTTCCGTTCATGCC
TGTCTTTCTTTTTGTGCCTTTTCGTTCGCTGTGAAGGTCAACCTTTTTGT
TTATTTGTGAAGGGAATGCTGTTTGAGCCACACACCGCAGCATGAACGTT
CATTTGAGCTGTATGCATACATGTGCGGAGATCGTGCTGAGGACTGCCGA
AAACGACCAACATGATATTGAATACAGCGCTGGGCCCGCTATAGTGCCGT
GTGAAAAGTGCCGGTGTTCTCGGCTCGCACACACTGAAATACCAAGTCGT
TCTGTACTTGAAAATTGTGCCGGTGCCCGCCATAGTGCCGGCGTAGTCTC
TGGACACATTGCGGCACTGCTGTAGCGGGCCCAGCACTGCCTGTACCCCG
TTTAAAACCGCATCATCACTAGTATTTAGTGTTTTTGGGTGCTTGTTCTT
CCTTTCGGCCGGCAGAAATTCAGCGTCTGCGAGAAGAAGGGGGCCGGCGG
CGTGGCTAGCTACGTCCGCACCAAGACGCTCAAGAACCAGTTGGTGGTGC
ACGCCCTGTGCCTCGCACTCGTTCTCGAGGGGTGCCGCATGGAGATTGGT
GTCCTGGCTGAGGACTTCAGGCTGTCTACCGCGGAGGCTAGGAGCATGCT
CCGGGAGCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12975:586..3395+

>mRNA_E-fasciculatus_F_contig12975.2253.1 ID=mRNA_E-fasciculatus_F_contig12975.2253.1|Name=mRNA_E-fasciculatus_F_contig12975.2253.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1506bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12975:586..3395+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCAGATCTCGAGACGCTAACGTGATCCAGGCGGGTTCGGTGGTCGGGGG
CTCCGCTATGTCGCGCGTTCTGGGTAGGGCGTTGAAGGAAGAAGAGGGCG
GCGGAGCTGGTCAGATCTCGAGACGCTAACGTGATCCAGGCGGGTTCGGT
GGTCGGGGGCTCCGCTATGTCGCGCGTTCTGGGTAGGGCGTTGAAGGAAG
AAGAGGGCGGCGGAGCTGGCGGCGAGGGCGCCGCCGGCGCCTCCACCGCT
ACCGACGGCGCCTTAGCAGCGGTGGAAGAAGCACGCCGCCGTTTCCTCCC
CAAGATGCGGAAGGAGGCGTCCACGCCGGAGGGGGTGTACTCGGCCGAAG
ATATCGCGGGGCCCCAGGAGCTGGAGTCCATGGAGAGAGAGATCGACAGG
GCGGCCGAGGAAATTGAGGCGGCGAGGGCGCCGCCGGCGCCTCCACCGCT
ACCGACGGCGCCTTAGCAGCGGTGGAAGAAGCACGCCGCCGTTTCCTCCC
CAAGATGCGGAAGGAGGCGTCCACGCCGGAGGGGGTGTACTCGGCCGAAG
ATATCGCGGGGCCCCAGGAGCTGGAGTCCATGGAGAGAGAGATCGACAGG
GCGGCCGAGGAAATTGAGGGGGGTATGCACCAGTGGGCAAAGGATTTCGC
GGAGCGCTCTCGCGAGAGCTGTCCTAGGTTCGTCGGCAAACGGCTGACGC
TGCTCCTAGACCTAGGGGAGAGGAAGCAGAAGAGAAGGATGCTCGAGGGG
GGTATGCACCAGTGGGCAAAGGATTTCGCGGAGCGCTCTCGCGAGAGCTG
TCCTAGGTTCGTCGGCAAACGGCTGACGCTGCTCCTAGACCTAGGGGAGA
GGAAGCAGAAGAGAAGGATGCTCGAGCTGCTGTACCTGCGGCACATGTGC
GTGTTTCACCACGCTAGCGCCCTTCTCAAGGGCACCCCGGCGCAGCTGTC
CTCCAAGCTGGACATCCCCGAGATTGTACTGAGGCGTCTGCTCGAGCTGC
TGTACCTGCGGCACATGTGCGTGTTTCACCACGCTAGCGCCCTTCTCAAG
GGCACCCCGGCGCAGCTGTCCTCCAAGCTGGACATCCCCGAGATTGTACT
GAGGCGTCTGCTCGAGAAATTCAGCGTCTGCGAGAAGAAGGGGGCCGGCG
GCGTGGCTAGCTACGTCCGCACCAAGACGCTCAAGAACCAGTTGGTGGTG
CACGCCCTGTGCCTCGCACTCGTTCTCGAGGGGTGCCGCATGGAGATTGG
TGTCCTGGCTGAGGACTTCAGGCTGTCTACCGCGGAGGCTAGGAGCATGC
TCCGGGAGCTGAAATTCAGCGTCTGCGAGAAGAAGGGGGCCGGCGGCGTG
GCTAGCTACGTCCGCACCAAGACGCTCAAGAACCAGTTGGTGGTGCACGC
CCTGTGCCTCGCACTCGTTCTCGAGGGGTGCCGCATGGAGATTGGTGTCC
TGGCTGAGGACTTCAGGCTGTCTACCGCGGAGGCTAGGAGCATGCTCCGG
GAGCTG
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