prot_E-fasciculatus_F_contig12975.2253.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12975.2253.1
Unique Nameprot_E-fasciculatus_F_contig12975.2253.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length251
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12975.2253.1 vs. uniprot
Match: D7FGR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR9_ECTSI)

HSP 1 Score: 432 bits (1111), Expect = 6.890e-149
Identity = 230/251 (91.63%), Postives = 235/251 (93.63%), Query Frame = 0 
Query:    1 VRSRDANVIQAGSVVGGSAMSRVLGRALKEEEGGGAXXXXXXXXXTATDGALAAVEEARRRFLPKMRKEASTPEGVYSAEDIAGPQELESMEREIDRAAEEIEGGMHQWAKDFAERSRESCPRFVGKRLTLLLDLGERKQKRRMLELLYLRHMCVFHHASALLKGTPAQLSSKLDIPEIVLRRLLEKFSVCEKKGAGGVASYVRTKTLKNQLVVHALCLALVLEGCRMEIGVLAEDFRLSTAEARSMLREL 251
            +RSRDANVIQAGSVVGGSAMSRVLGRALKEEEGGGA         TATDGALAAVEEARRRFLPKMR EASTPEGVYSA DIAG QELESMEREIDRAAE+IEGGMHQWAKDFAER RESCP FVGKRLTLLLDLGER QKRRMLELLYLRHMCVFHHASALLKGTPAQLS+KLDIPEIVLRRLLEKFSVCEKKGAGG A+YVRTKTLKNQLVVHALCLALVLEGCR+EIGVLAEDFRLSTAEARSMLREL
Sbjct:  184 IRSRDANVIQAGSVVGGSAMSRVLGRALKEEEGGGAGGVDGDP--TATDGALAAVEEARRRFLPKMRTEASTPEGVYSAGDIAGVQELESMEREIDRAAEQIEGGMHQWAKDFAERPRESCPHFVGKRLTLLLDLGERNQKRRMLELLYLRHMCVFHHASALLKGTPAQLSAKLDIPEIVLRRLLEKFSVCEKKGAGGTANYVRTKTLKNQLVVHALCLALVLEGCRLEIGVLAEDFRLSTAEARSMLREL 432
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BLAST of mRNA_E-fasciculatus_F_contig12975.2253.1 vs. uniprot
Match: A0A7S2CC15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CC15_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 7.620e-9
Identity = 52/184 (28.26%), Postives = 89/184 (48.37%), Query Frame = 0 
Query:   70 ASTPEGVYSAEDIAGPQELESMEREIDRAAEEIEGGMHQWAKDFAERSRESCPRFVGKRLTLLLDLGERKQKRRMLELLYLRHMCVFH--HASALLKGTPAQLSSKLDIPEIVLRRLLEKFSVCEKKGAG-GVASYVRTKTLKNQLVVHALCLALVLEGCRMEIGVLAEDFRLSTAEARSMLRE 250
            A  P  VY+ + I   +E + +  ++      + GG        ++   ES P FV  RL       E+K       L  LRH+   H  H S   K +  + +  + +PE+VL++LL+ F+V +      G  +Y  TKTLK++L++H L + L + GC +    L +D +   A+ R+ML++
Sbjct:    6 ADMPLEVYNIKAILNDEEWKQLGSQVSAV---MSGG------GLSDNVAESWPTFVVSRLKHAKTSSEKKL------LFLLRHLIALHRKHGSFGGKRSMMEEAKAIGMPEVVLKKLLDTFTVGQPSDRDDGKLTYRSTKTLKDKLMLHLLVVGLNVNGCVIPTADLVDDLQYPHAQLRNMLQQ 174
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12975.2253.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FGR9_ECTSI6.890e-14991.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CC15_9STRA7.620e-928.26Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 88..108
IPR009668RNA polymerase I associated factor, A49-likePFAMPF06870RNA_pol_I_A49coord: 19..251
e-value: 7.3E-35
score: 120.6
IPR009668RNA polymerase I associated factor, A49-likePANTHERPTHR14440FAMILY NOT NAMEDcoord: 43..251

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12975contigE-fasciculatus_F_contig12975:586..3395 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12975.2253.1mRNA_E-fasciculatus_F_contig12975.2253.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12975 586..3395 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12975.2253.1 ID=prot_E-fasciculatus_F_contig12975.2253.1|Name=mRNA_E-fasciculatus_F_contig12975.2253.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=251bp
VRSRDANVIQAGSVVGGSAMSRVLGRALKEEEGGGAGGEGAAGASTATDG
ALAAVEEARRRFLPKMRKEASTPEGVYSAEDIAGPQELESMEREIDRAAE
EIEGGMHQWAKDFAERSRESCPRFVGKRLTLLLDLGERKQKRRMLELLYL
RHMCVFHHASALLKGTPAQLSSKLDIPEIVLRRLLEKFSVCEKKGAGGVA
SYVRTKTLKNQLVVHALCLALVLEGCRMEIGVLAEDFRLSTAEARSMLRE
L
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009668RNA_pol-assoc_fac_A49-like