mRNA_E-fasciculatus_F_contig12913.2206.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12913.2206.1
Unique NamemRNA_E-fasciculatus_F_contig12913.2206.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12913.2206.1 vs. uniprot
Match: A0A6H5JI62_9PHAE (tRNA N(3)-methylcytidine methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI62_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.650e-42
Identity = 82/123 (66.67%), Postives = 83/123 (67.48%), Query Frame = 1
Query:    1 RHDEAQLRFAKGRRLGDNVYVRQDGTTSYFFSLEDLRQLFCG------------------------------------GAPLVEEELSFVRRQYANRAQRVARRRVWVHGKFRKPMDSMVAPV 261
            RHDEAQLRFAKGRRLGDN YVRQDGTTSYFFSLEDLRQLFCG                                    GA LVEEELSFVRRQYANRAQ+VARRRVWVHGKFRKPM SM APV
Sbjct:  235 RHDEAQLRFAKGRRLGDNFYVRQDGTTSYFFSLEDLRQLFCGSSPGGSGLRDSSXXXXXXXXXXXTCSGQSNRGWFDGGASLVEEELSFVRRQYANRAQKVARRRVWVHGKFRKPMHSMAAPV 357          
BLAST of mRNA_E-fasciculatus_F_contig12913.2206.1 vs. uniprot
Match: A0A7S2MQY1_9STRA (tRNA N(3)-methylcytidine methyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MQY1_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.620e-22
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 RHDEAQLRFAKGRRLGDNVYVRQDGTTSYFFSLEDLRQLFCGGAPLVEEELSFVRRQYANRAQRVARRRVWVHGKFRKPMDS 246
            R DEAQLRF KGR+LGDN YV+QDGT  ++F+ +++  L      L   E+ F+RRQYANRAQ+VAR+RVW+HG+F+K M S
Sbjct:  251 RFDEAQLRFGKGRKLGDNFYVKQDGTRVFYFTCDEVSNLMTT-VGLETLEVDFIRRQYANRAQQVARQRVWIHGRFQKRMGS 331          
BLAST of mRNA_E-fasciculatus_F_contig12913.2206.1 vs. uniprot
Match: I2CR87_NANGC (Methyltransferase like 8 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR87_NANGC)

HSP 1 Score: 97.8 bits (242), Expect = 1.880e-22
Identity = 47/79 (59.49%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 RHDEAQLRFAKGRRLGDNVYVRQDGTTSYFFSLEDLRQLFCGGAPLVEE-ELSFVRRQYANRAQRVARRRVWVHGKFRK 234
            R DEAQLRF +G RLG+N Y+R DGT +Y+FS+EDLR++FCG      E E  +VRRQY NRA    RRRVWVH +F K
Sbjct:  261 RWDEAQLRFKRGHRLGENFYLRSDGTRAYYFSVEDLRKMFCGKEGGFREIEAGYVRRQYINRADAATRRRVWVHARFEK 339          
BLAST of mRNA_E-fasciculatus_F_contig12913.2206.1 vs. uniprot
Match: A0A4D9D926_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D926_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.810e-22
Identity = 47/79 (59.49%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 RHDEAQLRFAKGRRLGDNVYVRQDGTTSYFFSLEDLRQLFCGGAPLVEE-ELSFVRRQYANRAQRVARRRVWVHGKFRK 234
            R DEAQLRF +G RLG+N Y+R DGT +Y+FS+EDLR++FCG      E E  +VRRQY NRA    RRRVWVH +F K
Sbjct:  378 RWDEAQLRFKRGHRLGENFYLRSDGTRAYYFSVEDLREMFCGKEGGFREIEAGYVRRQYINRADAATRRRVWVHARFEK 456          
BLAST of mRNA_E-fasciculatus_F_contig12913.2206.1 vs. uniprot
Match: A0A1V9ZGM9_9STRA (tRNA N(3)-methylcytidine methyltransferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGM9_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.410e-21
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 RHDEAQLRFAKGRRLGDNVYVRQDGTTSYFFSLEDLRQLFCGGAPLVEEELSFVRRQYANRAQRVARRRVWVHGKFRKPMDS 246
            R+D+AQLRF  G +L DN YVRQD T +Y+F+ +++++LF   A LVE E  ++RRQYANR+Q V R RVW+H  F KPM +
Sbjct:  215 RYDQAQLRFKPGHKLADNFYVRQDNTRAYYFTTDEVKELF-EAAGLVERENEYIRRQYANRSQNVVRFRVWIHAVFEKPMAA 295          
BLAST of mRNA_E-fasciculatus_F_contig12913.2206.1 vs. uniprot
Match: A0A482S4R5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S4R5_9ARCH)

HSP 1 Score: 89.4 bits (220), Expect = 1.460e-21
Identity = 46/79 (58.23%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 RHDEAQLRFAKGRRLGDNVYVRQDGTTSYFFSLEDLRQLFCGGAPLVEEELSFVRRQYANRAQRVARRRVWVHGKFRKP 237
            R+DEAQLRF KG +L DN YVRQDGT SYFF+ E+LR +         EEL  + RQYANR QR AR R W+H K +KP
Sbjct:    5 RYDEAQLRFKKGSKLDDNFYVRQDGTCSYFFTCEELRTI-AETVGFECEELDVILRQYANRQQRKARHRCWIHMKIKKP 82          
BLAST of mRNA_E-fasciculatus_F_contig12913.2206.1 vs. uniprot
Match: A0A484DZW3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZW3_BRELC)

HSP 1 Score: 89.0 bits (219), Expect = 4.360e-21
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 RHDEAQLRFAKGRRLGDNVYVRQDGTTSYFFSLEDLRQLFCGGAPLVEEELSFVRRQYANRAQRVARRRVWVHGKFRKPMDSMVA 255
            R+D+AQLRF  G +L +N YVRQD T +Y+FS E++ +LF   A LV  E  ++RRQYANR Q V R RVWVH  F KP+ ++ A
Sbjct:   25 RYDQAQLRFRAGSKLQENFYVRQDNTRAYYFSTEEIDELFTE-AGLVSIENEYIRRQYANRQQNVVRFRVWVHAIFEKPLKAVGA 108          
BLAST of mRNA_E-fasciculatus_F_contig12913.2206.1 vs. uniprot
Match: A0A024U4J4_9STRA (tRNA N(3)-methylcytidine methyltransferase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U4J4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 5.420e-21
Identity = 44/80 (55.00%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 RHDEAQLRFAKGRRLGDNVYVRQDGTTSYFFSLEDLRQLFCGGAPLVEEELSFVRRQYANRAQRVARRRVWVHGKFRKPM 240
            R+D+AQLRF  G +L DN YVRQD T +Y+F+++++R LF   A LVE E  ++RRQY+NR+Q V R RVWVH  F KP+
Sbjct:  217 RYDQAQLRFKPGHKLADNFYVRQDNTRAYYFTIDEVRDLFVA-AGLVERENEYIRRQYSNRSQGVVRFRVWVHAIFEKPL 295          
BLAST of mRNA_E-fasciculatus_F_contig12913.2206.1 vs. uniprot
Match: A0A6G0XWX7_9STRA (tRNA N(3)-methylcytidine methyltransferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWX7_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.000e-20
Identity = 42/79 (53.16%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    1 RHDEAQLRFAKGRRLGDNVYVRQDGTTSYFFSLEDLRQLFCGGAPLVEEELSFVRRQYANRAQRVARRRVWVHGKFRKP 237
            R+D+AQLRF  G +L +N YVRQD T +Y+F++E++RQ+F   A ++E E  ++RRQYANR+Q V R RVW+H  F KP
Sbjct:  212 RYDQAQLRFKPGHKLAENFYVRQDNTRAYYFTIEEIRQMFVT-AGMIERENEYIRRQYANRSQGVVRFRVWIHAIFEKP 289          
BLAST of mRNA_E-fasciculatus_F_contig12913.2206.1 vs. uniprot
Match: A0A485LAU0_9STRA (tRNA N(3)-methylcytidine methyltransferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAU0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 7.970e-20
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 RHDEAQLRFAKGRRLGDNVYVRQDGTTSYFFSLEDLRQLFCGGAPLVEEELSFVRRQYANRAQRVARRRVWVHGKFRKPMDS 246
            R D+AQLRF  G +L DN YVRQD T +Y+F+ +++R LF   A +VE E  ++RRQYANR+Q V R RVW+H  F+KP+  
Sbjct:  215 RFDQAQLRFKPGHKLADNFYVRQDNTRAYYFTTDEVRDLFAK-AGMVECENEYIRRQYANRSQGVVRFRVWIHAVFQKPLTE 295          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12913.2206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI62_9PHAE1.650e-4266.67tRNA N(3)-methylcytidine methyltransferase n=2 Tax... [more]
A0A7S2MQY1_9STRA1.620e-2257.32tRNA N(3)-methylcytidine methyltransferase n=1 Tax... [more]
I2CR87_NANGC1.880e-2259.49Methyltransferase like 8 (Fragment) n=1 Tax=Nannoc... [more]
A0A4D9D926_9STRA3.810e-2259.49Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1V9ZGM9_9STRA1.410e-2153.66tRNA N(3)-methylcytidine methyltransferase n=1 Tax... [more]
A0A482S4R5_9ARCH1.460e-2158.23Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A484DZW3_BRELC4.360e-2152.94Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A024U4J4_9STRA5.420e-2155.00tRNA N(3)-methylcytidine methyltransferase n=1 Tax... [more]
A0A6G0XWX7_9STRA1.000e-2053.16tRNA N(3)-methylcytidine methyltransferase n=1 Tax... [more]
A0A485LAU0_9STRA7.970e-2052.44tRNA N(3)-methylcytidine methyltransferase n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12913contigE-fasciculatus_F_contig12913:2997..3830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue3.1e-35
Seed eggNOG ortholog2880.D7G2E0
KEGG rclassRC00003,RC00113,RC00392,RC01244
KEGG koko:K00599
KEGG ReactionR02671,R02912,R03955,R04939
EggNOG free text desc.tRNA (cytosine) methyltransferase activity
EggNOG OGsKOG2361@1,KOG2361@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-00_005800.2
Exons3
Model size264
Cds size264
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12913.2206.1prot_E-fasciculatus_F_contig12913.2206.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12913 2997..3830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927795.3062704-CDS-E-fasciculatus_F_contig12913:2996..31261622927795.3062704-CDS-E-fasciculatus_F_contig12913:2996..3126Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12913 2997..3126 -
1695995698.3093355-CDS-E-fasciculatus_F_contig12913:2996..31261695995698.3093355-CDS-E-fasciculatus_F_contig12913:2996..3126Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12913 2997..3126 -
1622927795.326527-CDS-E-fasciculatus_F_contig12913:3216..32811622927795.326527-CDS-E-fasciculatus_F_contig12913:3216..3281Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12913 3217..3281 -
1695995698.3219848-CDS-E-fasciculatus_F_contig12913:3216..32811695995698.3219848-CDS-E-fasciculatus_F_contig12913:3216..3281Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12913 3217..3281 -
1622927795.337146-CDS-E-fasciculatus_F_contig12913:3761..38301622927795.337146-CDS-E-fasciculatus_F_contig12913:3761..3830Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12913 3762..3830 -
1695995698.332954-CDS-E-fasciculatus_F_contig12913:3761..38301695995698.332954-CDS-E-fasciculatus_F_contig12913:3761..3830Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12913 3762..3830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12913.2206.1

>prot_E-fasciculatus_F_contig12913.2206.1 ID=prot_E-fasciculatus_F_contig12913.2206.1|Name=mRNA_E-fasciculatus_F_contig12913.2206.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=88bp
RHDEAQLRFAKGRRLGDNVYVRQDGTTSYFFSLEDLRQLFCGGAPLVEEE
LSFVRRQYANRAQRVARRRVWVHGKFRKPMDSMVAPV*
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mRNA from alignment at E-fasciculatus_F_contig12913:2997..3830-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12913.2206.1 ID=mRNA_E-fasciculatus_F_contig12913.2206.1|Name=mRNA_E-fasciculatus_F_contig12913.2206.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=834bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12913:2997..3830- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCACGATGAAGCGCAGCTGCGATTTGCAAAAGGACGGCGATTGGGCGA CAACGTCTACGTCCGACAGGTAACCCTCCTTCTAGTACGCCTGAAGTCAA TTCATCCTTTCATACGGTCGGACCGCAATGGACCTCCCAGTCCTCAGGAC TTCCACCCAGCATCGCACTCACCACTTGCATGCCGATGGCTTCGGGTCGC CGGGACATTAAATAGTGACCGTGGATGATGTCTGTGAAAACGTGAATTGT TCCGTTTGAATATGGGTACGGCAGCAAATTGTTCCGTTTGAATATGGGTA CGGCAGCAAATTGTTCCGTTTGAATATGGGTACGGCAGCAACACCGCCCC TCGGCTTGCAAAGTGTGGGGTACATGGAGCCCTGAGTTCCTTGACAGCAG GAGTGCTTTGAAACGTTTTGACGTTTTGACACCAAGAATCCAGCGTCCAA ACCCACCAAACGCTATCACCGAACCTCCCCCCAACAATACCCAATGCCCT GGTTTCCACATTCCGAACCGTGTCGCCGAAACGTTTTTTTCCACTTCAGG ACGGTACGACAAGCTATTTTTTTTCGTTGGAAGACCTGAGGCAGCTCTTC TGCGGCGGTGCTCCGTCCGAATCGGGGCATCGAGATAGCAGCAGTAGCAC TAGCAGCGCCGGTTCCGGCCAGAGCGATCGTGGGTGGTTTGATGGTGGAG CAAGCCTGGTCGAAGAAGAGCTGTCGTTCGTGAGGAGGCAGTACGCGAAT AGGGCGCAGAGGGTGGCGCGGAGGAGGGTGTGGGTACACGGAAAGTTCCG AAAACCGATGGACTCGATGGTGGCACCGGTGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12913:2997..3830-

>mRNA_E-fasciculatus_F_contig12913.2206.1 ID=mRNA_E-fasciculatus_F_contig12913.2206.1|Name=mRNA_E-fasciculatus_F_contig12913.2206.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=528bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12913:2997..3830- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCACGATGAAGCGCAGCTGCGATTTGCAAAAGGACGGCGATTGGGCGA
CAACGTCTACGTCCGACAGAGGCACGATGAAGCGCAGCTGCGATTTGCAA
AAGGACGGCGATTGGGCGACAACGTCTACGTCCGACAGGACGGTACGACA
AGCTATTTTTTTTCGTTGGAAGACCTGAGGCAGCTCTTCTGCGGCGGTGC
TCCGACGGTACGACAAGCTATTTTTTTTCGTTGGAAGACCTGAGGCAGCT
CTTCTGCGGCGGTGCTCCCCTGGTCGAAGAAGAGCTGTCGTTCGTGAGGA
GGCAGTACGCGAATAGGGCGCAGAGGGTGGCGCGGAGGAGGGTGTGGGTA
CACGGAAAGTTCCGAAAACCGATGGACTCGATGGTGGCACCGGTGTAGCC
TGGTCGAAGAAGAGCTGTCGTTCGTGAGGAGGCAGTACGCGAATAGGGCG
CAGAGGGTGGCGCGGAGGAGGGTGTGGGTACACGGAAAGTTCCGAAAACC
GATGGACTCGATGGTGGCACCGGTGTAG
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