mRNA_E-fasciculatus_F_contig12910.2204.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: D8LNW5_ECTSI (Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW5_ECTSI) HSP 1 Score: 390 bits (1003), Expect = 4.630e-128 Identity = 194/196 (98.98%), Postives = 195/196 (99.49%), Query Frame = 1
Query: 1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELLETIQ 588
GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEF DPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPE+EITSKVVELLETIQ
Sbjct: 603 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFADPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEDEITSKVVELLETIQ 798
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: A0A835YT63_9STRA (Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT63_9STRA) HSP 1 Score: 285 bits (728), Expect = 1.650e-87 Identity = 137/197 (69.54%), Postives = 163/197 (82.74%), Query Frame = 1
Query: 1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEE-ITSKVVELLETIQ 588
GTKTE EKFAGG +TTTVEAYI+G+GRAIQGATSH+LGQNFGKMF I +E ++G IPWQTSWG+TTR++GVCVMCHGDDQGLVLPPRVAPLQ VI+P+VTKK L+ + F D IV L+ VRVKFD R NYTAGWKYNHWEQKGVPIRLEVGPRD+E+++ V+ RRDTG+K +P E I +++ +LE IQ
Sbjct: 608 GTKTELEKFAGGFRTTTVEAYITGSGRAIQGATSHNLGQNFGKMFNINFEAKDGTSKIPWQTSWGITTRSIGVCVMCHGDDQGLVLPPRVAPLQVVIVPVVTKKFGLDQLSPFVDKIVADLRGGNVRVKFDTRDNYTAGWKYNHWEQKGVPIRLEVGPRDVEAERVVVVRRDTGDKQEMPVEAGIQGRILGVLEDIQ 804
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: A0A7S2GY89_9STRA (Proline--tRNA ligase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GY89_9STRA) HSP 1 Score: 260 bits (664), Expect = 7.640e-84 Identity = 127/196 (64.80%), Postives = 152/196 (77.55%), Query Frame = 1
Query: 1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELLETIQ 588
G KTE EKFAGGH+TTTVEAYI G+GRAIQGATSH+LGQNFGKMF I+Y+DE + + WQTSWGLTTRT+GV VM HGDD GLVLPPR+APLQAVI+PIV+KKV +E + + + I+ SL AG+R K+D NY GWKYNHWEQKGVPIR+EVGPRD+E +Q +A R EKI + I S V + L+ IQ
Sbjct: 25 GYKTEKEKFAGGHQTTTVEAYIPGSGRAIQGATSHNLGQNFGKMFDIRYQDEKAQSQVAWQTSWGLTTRTIGVMVMVHGDDTGLVLPPRIAPLQAVIVPIVSKKVTMEVLSPYCEKILGSLVEAGIRAKYDSDENYNPGWKYNHWEQKGVPIRIEVGPRDVEKQQARLAVRYNNEKIDTGVDGIGSTVKDKLDAIQ 220
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: A0A7S3H5B0_9STRA (Proline--tRNA ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5B0_9STRA) HSP 1 Score: 270 bits (690), Expect = 1.380e-83 Identity = 131/196 (66.84%), Postives = 152/196 (77.55%), Query Frame = 1
Query: 1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELLETIQ 588
G KTEAEKFAG H TTTVEAYI+G+GRAIQGATSH+LGQNFGKMFKI +EDE GE+ IPWQTSWGLTTR +GV VM HGD++GLVLPPRVAP+QA+I PI K + +V + D I LK AG+RV DDR NYT GWK+NHWEQKGVP+R+EVGPRD +KQ + RRD GEK + + S V LLETIQ
Sbjct: 399 GQKTEAEKFAGAHHTTTVEAYINGSGRAIQGATSHNLGQNFGKMFKINFEDEKGEKQIPWQTSWGLTTRAIGVAVMVHGDNKGLVLPPRVAPVQAIICPIAAKDMDYRELVRYCDEIHSELKKAGIRVDVDDRQNYTPGWKFNHWEQKGVPVRIEVGPRDFANKQMRLVRRDNGEKSDIAFTDAASVVAALLETIQ 594
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: A0A7S4HM09_9STRA (Proline--tRNA ligase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HM09_9STRA) HSP 1 Score: 260 bits (665), Expect = 2.090e-81 Identity = 130/196 (66.33%), Postives = 150/196 (76.53%), Query Frame = 1
Query: 1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELLETIQ 588
G KTE EKFAGGH+TTTVEAYI+G+GRAIQGATSH+LGQNFGKMF I ++DE GE I WQTSWGLTTRT+GV VM HGDD GLVLPPRVAPLQAVI+PIV+KK L+ + + I+ LKAAGVR KFDDR Y GWKYNHWEQKGVPIR+EVGPRDIE+K + R EK ++ + + LE IQ
Sbjct: 238 GYKTEKEKFAGGHQTTTVEAYIAGSGRAIQGATSHNLGQNFGKMFDISFQDEKGETQIAWQTSWGLTTRTIGVMVMVHGDDTGLVLPPRVAPLQAVIVPIVSKKFTLDDCGPYCEKILSDLKAAGVRAKFDDRAMYNPGWKYNHWEQKGVPIRIEVGPRDIENKAARVVVRYNNEKTDFAVADMGTTIPAKLEAIQ 433
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: A0A6S8DLL8_9STRA (Proline--tRNA ligase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8DLL8_9STRA) HSP 1 Score: 260 bits (664), Expect = 2.770e-79 Identity = 124/193 (64.25%), Postives = 153/193 (79.27%), Query Frame = 1
Query: 1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYED-ENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELL 576
GTKTE EKFAGGH+TTTVEAY++G+GRAIQGATSH+LGQNFGK++ I+ ED E G++ IPWQTSWGLTTR++GV VM HGDDQGLVLPPRVAPL VI+P+V K +E + F D ++ ++K+ G R K D+R NY+ GWKYNHWEQKGVPIR+E+GPRD+E+KQ RR G K T+P E I S + LL
Sbjct: 448 GTKTEKEKFAGGHRTTTVEAYVAGSGRAIQGATSHNLGQNFGKIYHIEVEDQEAGKKLIPWQTSWGLTTRSIGVAVMVHGDDQGLVLPPRVAPLHVVIVPLVYKTCTMEQLSPFVDLVMAAVKSKGFRCKVDNRSNYSPGWKYNHWEQKGVPIRMEIGPRDLEAKQVTAVRRVDGNKSTIPLENIASTIESLL 640
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: B8LCI1_THAPS (Proline--tRNA ligase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LCI1_THAPS) HSP 1 Score: 252 bits (644), Expect = 1.590e-78 Identity = 126/196 (64.29%), Postives = 148/196 (75.51%), Query Frame = 1
Query: 1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELLETIQ 588
G KTE EKFAGGH+TTTVEAYI +GRAIQGATSH+L QNFGKMF I Y+DE GE I WQTSWGLTTRT+GV +M HGDD GLVLPP VAP QAVIIPIV+K LE + + + I+KSL+ G+R K DDR+ Y GWKY HWEQKGVPIR+EVGPRD+E +Q M R GEKI V + I S + + L+ +Q
Sbjct: 223 GYKTEKEKFAGGHQTTTVEAYIPVSGRAIQGATSHNLWQNFGKMFDINYQDEKGETKIAWQTSWGLTTRTIGVMIMVHGDDTGLVLPPMVAPQQAVIIPIVSKSCPLENLSGYCEDILKSLEEKGIRAKLDDRLIYNPGWKYAHWEQKGVPIRIEVGPRDLEKRQARMVVRFGGEKIDVSVDTIASDIEKKLKEVQ 418
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: A0A7S1Z342_TRICV (Proline--tRNA ligase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z342_TRICV) HSP 1 Score: 257 bits (656), Expect = 2.570e-78 Identity = 125/196 (63.78%), Postives = 152/196 (77.55%), Query Frame = 1
Query: 1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELLETIQ 588
G KTE EKFAGG++TTTVEAYI +GRAIQGATSH+LGQNFGKMF I+Y+DE GE I WQTSWGLTTRT+GV +M HGDD GLVLPP +APLQAVI+PIV+KK +E + + D I+ SLKAAG+R KFDDR Y GWKYNHWEQKGVP+R+EVGPRD+E +Q + R +GEK + + V +++ IQ
Sbjct: 450 GYKTEKEKFAGGYQTTTVEAYIPMSGRAIQGATSHNLGQNFGKMFDIKYQDEKGESQIAWQTSWGLTTRTIGVMIMVHGDDSGLVLPPAIAPLQAVIVPIVSKKCTMEQLGPYCDKILASLKAAGLRAKFDDREMYNPGWKYNHWEQKGVPVRIEVGPRDMEGEQARVVVRHSGEKADYKLDVLADTVKGMMDGIQ 645
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: B7GC21_PHATC (Proline--tRNA ligase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GC21_PHATC) HSP 1 Score: 249 bits (636), Expect = 8.560e-78 Identity = 122/195 (62.56%), Postives = 148/195 (75.90%), Query Frame = 1
Query: 1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELLETI 585
G KTE EKFAGG +TTTVEAYI+G+GRAIQGATSH+LGQNFGKMF+I +++E GE IPWQTSWGLTTRT+GV VM HGDD GLVLPPRVAPLQ VI+PI++KK+ E + I+ LK AG+R K+DDR Y GWKYNHWEQKGVP+R+EVGPRDIE K + R +K P E + S + +++ I
Sbjct: 172 GYKTEKEKFAGGFRTTTVEAYIAGSGRAIQGATSHNLGQNFGKMFEISFQNEKGESQIPWQTSWGLTTRTIGVMVMVHGDDTGLVLPPRVAPLQVVIVPIISKKLTPEQADPYCLSILADLKKAGLRAKYDDRSAYNPGWKYNHWEQKGVPVRIEVGPRDIEQKSARVVVRHNSDKEDHPVEGLGSLLRNMMDVI 366
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: A0A7S0T0X0_9STRA (Proline--tRNA ligase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0T0X0_9STRA) HSP 1 Score: 246 bits (629), Expect = 1.450e-77 Identity = 123/197 (62.44%), Postives = 148/197 (75.13%), Query Frame = 1
Query: 1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVK-LETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELLETIQ 588
G KTE EKFAGGH TTTVEAYI+G+GRAIQGATSH+LG FGKMFKI YEDE GE+AIPWQTSWGLTTRT+GV VM HGD++GLVLPPR+AP+Q +I+PIV K L+ + +TD I LK AG+RV D ++TAGWK+NHWEQKGVPIR+E+GPRD Q + RRD G K ++ + LL+ IQ
Sbjct: 106 GMKTEMEKFAGGHHTTTVEAYINGSGRAIQGATSHNLGLGFGKMFKIYYEDEKGERAIPWQTSWGLTTRTIGVAVMVHGDNKGLVLPPRIAPIQVIILPIVLKNFDGLQDLYTYTDNIRILLKKAGIRVDVDKSEHHTAGWKFNHWEQKGVPIRIEIGPRDFTQNQVRLVRRDNGFKQDASVIDLDQTIRLLLDQIQ 302 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12910.2204.1 >prot_E-fasciculatus_F_contig12910.2204.1 ID=prot_E-fasciculatus_F_contig12910.2204.1|Name=mRNA_E-fasciculatus_F_contig12910.2204.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=196bp GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEback to top mRNA from alignment at E-fasciculatus_F_contig12910:335..3726+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12910.2204.1 ID=mRNA_E-fasciculatus_F_contig12910.2204.1|Name=mRNA_E-fasciculatus_F_contig12910.2204.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3392bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12910:335..3726+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12910:335..3726+ >mRNA_E-fasciculatus_F_contig12910.2204.1 ID=mRNA_E-fasciculatus_F_contig12910.2204.1|Name=mRNA_E-fasciculatus_F_contig12910.2204.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1176bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12910:335..3726+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |