mRNA_E-fasciculatus_F_contig12910.2204.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12910.2204.1
Unique NamemRNA_E-fasciculatus_F_contig12910.2204.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: D8LNW5_ECTSI (Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW5_ECTSI)

HSP 1 Score: 390 bits (1003), Expect = 4.630e-128
Identity = 194/196 (98.98%), Postives = 195/196 (99.49%), Query Frame = 1
Query:    1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELLETIQ 588
            GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEF DPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPE+EITSKVVELLETIQ
Sbjct:  603 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFADPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEDEITSKVVELLETIQ 798          
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: A0A835YT63_9STRA (Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT63_9STRA)

HSP 1 Score: 285 bits (728), Expect = 1.650e-87
Identity = 137/197 (69.54%), Postives = 163/197 (82.74%), Query Frame = 1
Query:    1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEE-ITSKVVELLETIQ 588
            GTKTE EKFAGG +TTTVEAYI+G+GRAIQGATSH+LGQNFGKMF I +E ++G   IPWQTSWG+TTR++GVCVMCHGDDQGLVLPPRVAPLQ VI+P+VTKK  L+ +  F D IV  L+   VRVKFD R NYTAGWKYNHWEQKGVPIRLEVGPRD+E+++ V+ RRDTG+K  +P E  I  +++ +LE IQ
Sbjct:  608 GTKTELEKFAGGFRTTTVEAYITGSGRAIQGATSHNLGQNFGKMFNINFEAKDGTSKIPWQTSWGITTRSIGVCVMCHGDDQGLVLPPRVAPLQVVIVPVVTKKFGLDQLSPFVDKIVADLRGGNVRVKFDTRDNYTAGWKYNHWEQKGVPIRLEVGPRDVEAERVVVVRRDTGDKQEMPVEAGIQGRILGVLEDIQ 804          
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: A0A7S2GY89_9STRA (Proline--tRNA ligase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GY89_9STRA)

HSP 1 Score: 260 bits (664), Expect = 7.640e-84
Identity = 127/196 (64.80%), Postives = 152/196 (77.55%), Query Frame = 1
Query:    1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELLETIQ 588
            G KTE EKFAGGH+TTTVEAYI G+GRAIQGATSH+LGQNFGKMF I+Y+DE  +  + WQTSWGLTTRT+GV VM HGDD GLVLPPR+APLQAVI+PIV+KKV +E +  + + I+ SL  AG+R K+D   NY  GWKYNHWEQKGVPIR+EVGPRD+E +Q  +A R   EKI    + I S V + L+ IQ
Sbjct:   25 GYKTEKEKFAGGHQTTTVEAYIPGSGRAIQGATSHNLGQNFGKMFDIRYQDEKAQSQVAWQTSWGLTTRTIGVMVMVHGDDTGLVLPPRIAPLQAVIVPIVSKKVTMEVLSPYCEKILGSLVEAGIRAKYDSDENYNPGWKYNHWEQKGVPIRIEVGPRDVEKQQARLAVRYNNEKIDTGVDGIGSTVKDKLDAIQ 220          
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: A0A7S3H5B0_9STRA (Proline--tRNA ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5B0_9STRA)

HSP 1 Score: 270 bits (690), Expect = 1.380e-83
Identity = 131/196 (66.84%), Postives = 152/196 (77.55%), Query Frame = 1
Query:    1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELLETIQ 588
            G KTEAEKFAG H TTTVEAYI+G+GRAIQGATSH+LGQNFGKMFKI +EDE GE+ IPWQTSWGLTTR +GV VM HGD++GLVLPPRVAP+QA+I PI  K +    +V + D I   LK AG+RV  DDR NYT GWK+NHWEQKGVP+R+EVGPRD  +KQ  + RRD GEK  +   +  S V  LLETIQ
Sbjct:  399 GQKTEAEKFAGAHHTTTVEAYINGSGRAIQGATSHNLGQNFGKMFKINFEDEKGEKQIPWQTSWGLTTRAIGVAVMVHGDNKGLVLPPRVAPVQAIICPIAAKDMDYRELVRYCDEIHSELKKAGIRVDVDDRQNYTPGWKFNHWEQKGVPVRIEVGPRDFANKQMRLVRRDNGEKSDIAFTDAASVVAALLETIQ 594          
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: A0A7S4HM09_9STRA (Proline--tRNA ligase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HM09_9STRA)

HSP 1 Score: 260 bits (665), Expect = 2.090e-81
Identity = 130/196 (66.33%), Postives = 150/196 (76.53%), Query Frame = 1
Query:    1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELLETIQ 588
            G KTE EKFAGGH+TTTVEAYI+G+GRAIQGATSH+LGQNFGKMF I ++DE GE  I WQTSWGLTTRT+GV VM HGDD GLVLPPRVAPLQAVI+PIV+KK  L+    + + I+  LKAAGVR KFDDR  Y  GWKYNHWEQKGVPIR+EVGPRDIE+K   +  R   EK      ++ + +   LE IQ
Sbjct:  238 GYKTEKEKFAGGHQTTTVEAYIAGSGRAIQGATSHNLGQNFGKMFDISFQDEKGETQIAWQTSWGLTTRTIGVMVMVHGDDTGLVLPPRVAPLQAVIVPIVSKKFTLDDCGPYCEKILSDLKAAGVRAKFDDRAMYNPGWKYNHWEQKGVPIRIEVGPRDIENKAARVVVRYNNEKTDFAVADMGTTIPAKLEAIQ 433          
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: A0A6S8DLL8_9STRA (Proline--tRNA ligase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8DLL8_9STRA)

HSP 1 Score: 260 bits (664), Expect = 2.770e-79
Identity = 124/193 (64.25%), Postives = 153/193 (79.27%), Query Frame = 1
Query:    1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYED-ENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELL 576
            GTKTE EKFAGGH+TTTVEAY++G+GRAIQGATSH+LGQNFGK++ I+ ED E G++ IPWQTSWGLTTR++GV VM HGDDQGLVLPPRVAPL  VI+P+V K   +E +  F D ++ ++K+ G R K D+R NY+ GWKYNHWEQKGVPIR+E+GPRD+E+KQ    RR  G K T+P E I S +  LL
Sbjct:  448 GTKTEKEKFAGGHRTTTVEAYVAGSGRAIQGATSHNLGQNFGKIYHIEVEDQEAGKKLIPWQTSWGLTTRSIGVAVMVHGDDQGLVLPPRVAPLHVVIVPLVYKTCTMEQLSPFVDLVMAAVKSKGFRCKVDNRSNYSPGWKYNHWEQKGVPIRMEIGPRDLEAKQVTAVRRVDGNKSTIPLENIASTIESLL 640          
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: B8LCI1_THAPS (Proline--tRNA ligase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LCI1_THAPS)

HSP 1 Score: 252 bits (644), Expect = 1.590e-78
Identity = 126/196 (64.29%), Postives = 148/196 (75.51%), Query Frame = 1
Query:    1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELLETIQ 588
            G KTE EKFAGGH+TTTVEAYI  +GRAIQGATSH+L QNFGKMF I Y+DE GE  I WQTSWGLTTRT+GV +M HGDD GLVLPP VAP QAVIIPIV+K   LE +  + + I+KSL+  G+R K DDR+ Y  GWKY HWEQKGVPIR+EVGPRD+E +Q  M  R  GEKI V  + I S + + L+ +Q
Sbjct:  223 GYKTEKEKFAGGHQTTTVEAYIPVSGRAIQGATSHNLWQNFGKMFDINYQDEKGETKIAWQTSWGLTTRTIGVMIMVHGDDTGLVLPPMVAPQQAVIIPIVSKSCPLENLSGYCEDILKSLEEKGIRAKLDDRLIYNPGWKYAHWEQKGVPIRIEVGPRDLEKRQARMVVRFGGEKIDVSVDTIASDIEKKLKEVQ 418          
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: A0A7S1Z342_TRICV (Proline--tRNA ligase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z342_TRICV)

HSP 1 Score: 257 bits (656), Expect = 2.570e-78
Identity = 125/196 (63.78%), Postives = 152/196 (77.55%), Query Frame = 1
Query:    1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELLETIQ 588
            G KTE EKFAGG++TTTVEAYI  +GRAIQGATSH+LGQNFGKMF I+Y+DE GE  I WQTSWGLTTRT+GV +M HGDD GLVLPP +APLQAVI+PIV+KK  +E +  + D I+ SLKAAG+R KFDDR  Y  GWKYNHWEQKGVP+R+EVGPRD+E +Q  +  R +GEK     + +   V  +++ IQ
Sbjct:  450 GYKTEKEKFAGGYQTTTVEAYIPMSGRAIQGATSHNLGQNFGKMFDIKYQDEKGESQIAWQTSWGLTTRTIGVMIMVHGDDSGLVLPPAIAPLQAVIVPIVSKKCTMEQLGPYCDKILASLKAAGLRAKFDDREMYNPGWKYNHWEQKGVPVRIEVGPRDMEGEQARVVVRHSGEKADYKLDVLADTVKGMMDGIQ 645          
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: B7GC21_PHATC (Proline--tRNA ligase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GC21_PHATC)

HSP 1 Score: 249 bits (636), Expect = 8.560e-78
Identity = 122/195 (62.56%), Postives = 148/195 (75.90%), Query Frame = 1
Query:    1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELLETI 585
            G KTE EKFAGG +TTTVEAYI+G+GRAIQGATSH+LGQNFGKMF+I +++E GE  IPWQTSWGLTTRT+GV VM HGDD GLVLPPRVAPLQ VI+PI++KK+  E    +   I+  LK AG+R K+DDR  Y  GWKYNHWEQKGVP+R+EVGPRDIE K   +  R   +K   P E + S +  +++ I
Sbjct:  172 GYKTEKEKFAGGFRTTTVEAYIAGSGRAIQGATSHNLGQNFGKMFEISFQNEKGESQIPWQTSWGLTTRTIGVMVMVHGDDTGLVLPPRVAPLQVVIVPIISKKLTPEQADPYCLSILADLKKAGLRAKYDDRSAYNPGWKYNHWEQKGVPVRIEVGPRDIEQKSARVVVRHNSDKEDHPVEGLGSLLRNMMDVI 366          
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Match: A0A7S0T0X0_9STRA (Proline--tRNA ligase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0T0X0_9STRA)

HSP 1 Score: 246 bits (629), Expect = 1.450e-77
Identity = 123/197 (62.44%), Postives = 148/197 (75.13%), Query Frame = 1
Query:    1 GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVK-LETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELLETIQ 588
            G KTE EKFAGGH TTTVEAYI+G+GRAIQGATSH+LG  FGKMFKI YEDE GE+AIPWQTSWGLTTRT+GV VM HGD++GLVLPPR+AP+Q +I+PIV K    L+ +  +TD I   LK AG+RV  D   ++TAGWK+NHWEQKGVPIR+E+GPRD    Q  + RRD G K      ++   +  LL+ IQ
Sbjct:  106 GMKTEMEKFAGGHHTTTVEAYINGSGRAIQGATSHNLGLGFGKMFKIYYEDEKGERAIPWQTSWGLTTRTIGVAVMVHGDNKGLVLPPRIAPIQVIILPIVLKNFDGLQDLYTYTDNIRILLKKAGIRVDVDKSEHHTAGWKFNHWEQKGVPIRIEIGPRDFTQNQVRLVRRDNGFKQDASVIDLDQTIRLLLDQIQ 302          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12910.2204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNW5_ECTSI4.630e-12898.98Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YT63_9STRA1.650e-8769.54Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2GY89_9STRA7.640e-8464.80Proline--tRNA ligase n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3H5B0_9STRA1.380e-8366.84Proline--tRNA ligase n=1 Tax=Spumella elongata Tax... [more]
A0A7S4HM09_9STRA2.090e-8166.33Proline--tRNA ligase n=1 Tax=Odontella aurita TaxI... [more]
A0A6S8DLL8_9STRA2.770e-7964.25Proline--tRNA ligase n=1 Tax=Aureoumbra lagunensis... [more]
B8LCI1_THAPS1.590e-7864.29Proline--tRNA ligase (Fragment) n=1 Tax=Thalassios... [more]
A0A7S1Z342_TRICV2.570e-7863.78Proline--tRNA ligase (Fragment) n=1 Tax=Trieres ch... [more]
B7GC21_PHATC8.560e-7862.56Proline--tRNA ligase n=2 Tax=Phaeodactylum tricorn... [more]
A0A7S0T0X0_9STRA1.450e-7762.44Proline--tRNA ligase n=1 Tax=Chromulina nebulosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12910contigE-fasciculatus_F_contig12910:335..3726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score391.0
Seed ortholog evalue3.4e-106
Seed eggNOG ortholog2880.D8LNW5
KEGG rclassRC00004,RC00049,RC00055,RC00069,RC00296,RC00523,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K01120,ko:K01194,ko:K01874,ko:K01881,ko:K15437,ko:K22119
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR00010,R00191,R01234,R03522,R03659,R03661,R04773,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00230,ko00450,ko00480,ko00500,ko00970,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00230,map00450,map00480,map00500,map00970,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
KEGG ModuleM00359,M00360
EggNOG free text desc.synthetase
EggNOG OGsCOG0442@1,COG0625@1,KOG0867@2759,KOG4163@2759
EC2.5.1.18,3.1.4.17,3.2.1.28,6.1.1.10,6.1.1.15
COG Functional cat.J
CAZyGH37
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00537,ko01000,ko01007,ko02000,ko03016
Hectar predicted targeting categoryother localisation
Exons5
Model size588
Cds size588
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12910.2204.1prot_E-fasciculatus_F_contig12910.2204.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12910 335..3726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927795.0247352-CDS-E-fasciculatus_F_contig12910:334..4711622927795.0247352-CDS-E-fasciculatus_F_contig12910:334..471Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12910 335..471 +
1695995698.1870606-CDS-E-fasciculatus_F_contig12910:334..4711695995698.1870606-CDS-E-fasciculatus_F_contig12910:334..471Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12910 335..471 +
1622927795.051852-CDS-E-fasciculatus_F_contig12910:1268..13371622927795.051852-CDS-E-fasciculatus_F_contig12910:1268..1337Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12910 1269..1337 +
1695995698.2019928-CDS-E-fasciculatus_F_contig12910:1268..13371695995698.2019928-CDS-E-fasciculatus_F_contig12910:1268..1337Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12910 1269..1337 +
1622927795.0686567-CDS-E-fasciculatus_F_contig12910:1873..19791622927795.0686567-CDS-E-fasciculatus_F_contig12910:1873..1979Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12910 1874..1979 +
1695995698.21203-CDS-E-fasciculatus_F_contig12910:1873..19791695995698.21203-CDS-E-fasciculatus_F_contig12910:1873..1979Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12910 1874..1979 +
1622927795.0945132-CDS-E-fasciculatus_F_contig12910:2849..29591622927795.0945132-CDS-E-fasciculatus_F_contig12910:2849..2959Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12910 2850..2959 +
1695995698.2234159-CDS-E-fasciculatus_F_contig12910:2849..29591695995698.2234159-CDS-E-fasciculatus_F_contig12910:2849..2959Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12910 2850..2959 +
1622927795.115707-CDS-E-fasciculatus_F_contig12910:3560..37261622927795.115707-CDS-E-fasciculatus_F_contig12910:3560..3726Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12910 3561..3726 +
1695995698.2325644-CDS-E-fasciculatus_F_contig12910:3560..37261695995698.2325644-CDS-E-fasciculatus_F_contig12910:3560..3726Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12910 3561..3726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12910.2204.1

>prot_E-fasciculatus_F_contig12910.2204.1 ID=prot_E-fasciculatus_F_contig12910.2204.1|Name=mRNA_E-fasciculatus_F_contig12910.2204.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=196bp
GTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYE
DENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPI
VTKKVKLETIVEFTDPIVKSLKAAGVRVKFDDRINYTAGWKYNHWEQKGV
PIRLEVGPRDIESKQTVMARRDTGEKITVPEEEITSKVVELLETIQ
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mRNA from alignment at E-fasciculatus_F_contig12910:335..3726+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12910.2204.1 ID=mRNA_E-fasciculatus_F_contig12910.2204.1|Name=mRNA_E-fasciculatus_F_contig12910.2204.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3392bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12910:335..3726+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCACCAAGACCGAGGCGGAGAAGTTTGCGGGAGGGCACAAGACCACCAC GGTGGAGGCGTACATCTCGGGCACGGGCAGGGCCATCCAGGGGGCCACCA GCCACCACCTGGGACAGAACTTCGGCAAGATGTTCAAGTGAGTTTTGGTC AACGTTGGTTGGGACGTTGAAGGGGAGTTGTTGGTTGAGGTGAACGGGAC TGAGACTTGGGCAAGGTGTTGAAGTGAGTTATTTGTTAGAAGTGGTTTGG GATGAGAGGGATAAGAGACTTTGGTAAGATTGTGGATGAAACGGGCAGAG AGATTGGCAAAAGATGATTGAGTGAGTGATTGGTTGGGGTGAAAGGGACA GAGACTTGGGCAAGGTGTTGAAGTGAGTTATTTGTTACAACTGGTTTGGG ATGAGAGGGATAAGAGACTTGGGTAGGATTGTGGTTTGGATGGAAAGGAC AAAGAGGTCGGCGACATGTTCAAGAACTTCGGCAAGAGGTGCAAATGAGT TTTTGTCAGAAGTTGGTTGGGATGGAAGGGGCAGAGGAGTGACTGCCCAG AACTGGCGGTAATATTGGTGAGAGGACGATAGAACCAACATGCGAGAATA GGCACAAGTATCACGAGAATAAACTAGAAGGCCCGGTAGAACGCTTGTTT TTCTCGTAGTTTTCTTCCGGTTCTGTCTTTATCCCGGAGAGTAGCTTACA GCAGTACATAGCCCCCCCACTCGCGGGGCCCCAGATGATGGTCTAGAGAA GCGCTTTCCCGTTGTTTAGCACTGAGACTTGCGTTTTTTTTCATGAGACG ATTAGCGCGGTCGATGCTATTAGCAAAAACATACTACACAAACGCTTGTT TTCACCTCTGGATGCGTTTCATGGTGGTTTCTGTCTTTTTTGGCTTGTAT TTGTGCATGCAATGGTAATGCTTGTATTGTGCAGGATCCAGTACGAGGAC GAGAACGGAGAGCAGGCGATCCCGTGGCAGACAAGCTGGGGCCTCACCAC CAGGTCAGGCGTTTTCCTTTCCCGCGTTTATCCAGTTGACAATGCTTCCT TCCTTCGTGCCAACACATGCAGTGCTGCTGTGTTTTCCGAAAGCGTTTGG GGTCTTTTGGGCCATGGACTCACCGCCATGGTTGTGATGTGCTCGTAACA TTTTCCCCCATGTTAGTGAGCACCCTTATTTATTTAGTGTGTTTGGTTGA GTTGACACGAAACGTGCGTTATTTTTAGTGGCTCCCTGGCCTGCACGCAG CAGGCCTTGCCGATCTGGGCCTTCAATAGAGGACTCGATCGGGTAGTATG TAGTGGTGCATTTCGAGCACAAGATCGTACAACTGTGGTGTTGTCTTTCG CTCAGTCACTCGTGTCTTTGTTGTCACAGGGTGTGCGTTTGCTGATGTTG ATCTTGTGTGTATCTGCTTGCCTTTTGGTTGGGCGTGTTTGTGTTTGTCC TGTTCTTGTGCATGCAGGACTCTGGGTGTGTGCGTCCTAGTCCTAACCCT AACCCTAACCCTAGCCCCTAACCCTAACCCTAACCCTAGGACTCTGGGTG TGTGCGTCATGTGCCACGGGGACGACCAGGGCCTGGTGCTGCCCCCGAGG GTAGCTCCCCTGCAGGCTGTCATCATTCCCATCGTTACCAAGAAGGTTTG TTCCTGTGTGTGTGCATAGTTAGTACTTCAGTATCACCCAACCAAGCTGA CCGGTGACCAATGACAGTGTGCCAGTGTAAGTGCAGCTAAACCAGAATGC GCTTGAAAAGGCCATGATTTGAGACCCCGGTATGTATGTTTATGATTTTA GCATCAGCCAAGCTAACCGGCTGGCCAATGAAAAATCTTCCGTCTCAGTG CTGTTGAAATAGAGAGCGCTTCAAGAGGCCTTGATCTGGGACCCTGTGTG TGCGTCATTGTCTTTAGTATCAACCGAGCTAACCGGCTGACCAAATGAGA CTACGTAAGTCTCTGTGCTGCTGGAAACAGAAAGCGCATCCGAAGGCCAT GTGTGTGCTTGTGTGCAGCCGCTCGACGACGCATGGACATTATGCACTTG CACGCGAAAAAGGGCAAAAACACCCCGCTACATTGACGGCTGTTGCATAT TGTGGCACAGCGGTGTTCTCACTCCTAGACCTTGCCCCTCGTCATGTCTT TGGTTCGCAGTGTAGTCAGCAAGTCACAATGATACTCTGGTGGAAATCTA ACCCTCATGAGGGGATCTGATATTTTTTTTGTGTCTTCGATTCAACCGCA GCTTCATTTTGGTTTTTGCTGTTAAATGTCCCGGAGTCATTAATACCGGA CCTATGTAATACGTCAAGACAAGGAAACATAGCAGAACATCGGCATCAAC CCCGCTGCTTTATTTCTCCCACCGTGACATGTACCCCCGACCTCTCTCCC TCTACAACCCCACCACCCTCTCTCCCTCCATCCCACCCCTCTCTCTCCCG CATCGTCTATGGCGTTTTCTCTGGCCGCGCCTTTGGTCGCCCTTGTCTGG TCGCTGATTGGTCAGGTGAAGCTGGAGACGATTGTTGAGTTCACAGACCC CATCGTGAAGAGCCTCAAGGCTGCGGGCGTGCGAGTCAAGTTTGACGACA GGATTAACTACACCGCCGGCTGGAAGTGAGATGTCATCTTGACTTGACTT GATTTGACTCCTGTGCATTTTTTTTCATCACGAGATGTTGCGCGGTTTTT CGTTCACCACTTCGAGGCCGCAGGGCAGTTGTCGTTTTGCATGGGCCGTG TCTTGGTACGTATTGCCAAACGTGTTCTTTCGAAATAACCCATCAAAATT GTGTAGGTGTCGTTGCTTATTTGTTGTTTCGTTCACTTACCTGAGACGAG CTCGGAGTTGTTGCGGGCGTTTTTTTTTGTCGCGAAGCAGTTCCCGCTTG CGTTCTCGGCTCTGATGCAGTGTATGCTCACGGGCGGTCTTCGTTGTACA CACGATTTTTGTCAACTCTGAAATTACGAACTTTTGTTGGCCGACGTTCG AAATGGACTTGGGGCGCTTGATGATGGAAATGCCGTCTCGTACTAGCGGG CTGCTGTGCACAGCACTGCTGTCCTGCTGTACACACGAACTACATTAGCT TGTACACGCAGACTAACTGTTGACTACGGATGTAGAAGCGTCCCATTTGG AAATTTGTCTCGGTTCAGGTAGGTCTCCTCCAGACTGAAAATCGAGAACC GACTTGTTGGTTGCCACGCCACACAGGTACAACCACTGGGAGCAGAAGGG CGTGCCCATCCGGCTGGAGGTGGGCCCCCGCGACATCGAGAGCAAGCAGA CGGTGATGGCGAGAAGGGACACCGGGGAGAAGATCACGGTGCCCGAAGAG GAGATCACCTCCAAGGTGGTGGAACTCCTCGAGACCATCCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12910:335..3726+

>mRNA_E-fasciculatus_F_contig12910.2204.1 ID=mRNA_E-fasciculatus_F_contig12910.2204.1|Name=mRNA_E-fasciculatus_F_contig12910.2204.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1176bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12910:335..3726+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCACCAAGACCGAGGCGGAGAAGTTTGCGGGAGGGCACAAGACCACCAC
GGTGGAGGCGTACATCTCGGGCACGGGCAGGGCCATCCAGGGGGCCACCA
GCCACCACCTGGGACAGAACTTCGGCAAGATGTTCAAGGCACCAAGACCG
AGGCGGAGAAGTTTGCGGGAGGGCACAAGACCACCACGGTGGAGGCGTAC
ATCTCGGGCACGGGCAGGGCCATCCAGGGGGCCACCAGCCACCACCTGGG
ACAGAACTTCGGCAAGATGTTCAAGATCCAGTACGAGGACGAGAACGGAG
AGCAGGCGATCCCGTGGCAGACAAGCTGGGGCCTCACCACCAGGATCCAG
TACGAGGACGAGAACGGAGAGCAGGCGATCCCGTGGCAGACAAGCTGGGG
CCTCACCACCAGGACTCTGGGTGTGTGCGTCATGTGCCACGGGGACGACC
AGGGCCTGGTGCTGCCCCCGAGGGTAGCTCCCCTGCAGGCTGTCATCATT
CCCATCGTTACCAAGAAGGACTCTGGGTGTGTGCGTCATGTGCCACGGGG
ACGACCAGGGCCTGGTGCTGCCCCCGAGGGTAGCTCCCCTGCAGGCTGTC
ATCATTCCCATCGTTACCAAGAAGGTGAAGCTGGAGACGATTGTTGAGTT
CACAGACCCCATCGTGAAGAGCCTCAAGGCTGCGGGCGTGCGAGTCAAGT
TTGACGACAGGATTAACTACACCGCCGGCTGGAAGTGAAGCTGGAGACGA
TTGTTGAGTTCACAGACCCCATCGTGAAGAGCCTCAAGGCTGCGGGCGTG
CGAGTCAAGTTTGACGACAGGATTAACTACACCGCCGGCTGGAAGTACAA
CCACTGGGAGCAGAAGGGCGTGCCCATCCGGCTGGAGGTGGGCCCCCGCG
ACATCGAGAGCAAGCAGACGGTGATGGCGAGAAGGGACACCGGGGAGAAG
ATCACGGTGCCCGAAGAGGAGATCACCTCCAAGGTGGTGGAACTCCTCGA
GACCATCCAGGTACAACCACTGGGAGCAGAAGGGCGTGCCCATCCGGCTG
GAGGTGGGCCCCCGCGACATCGAGAGCAAGCAGACGGTGATGGCGAGAAG
GGACACCGGGGAGAAGATCACGGTGCCCGAAGAGGAGATCACCTCCAAGG
TGGTGGAACTCCTCGAGACCATCCAG
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