mRNA_E-fasciculatus_F_contig10001.22.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10001.22.1
Unique NamemRNA_E-fasciculatus_F_contig10001.22.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10001.22.1 vs. uniprot
Match: A0A6H5L1U6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U6_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 9.960e-10
Identity = 61/105 (58.10%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:   25 HRSNASSVEPSDSPKPYGSHRGRARRAGAPAGAAAKSATSGTLPASXXXXXXXXXXX-RREAQSTVRPSAATXXXXXXXXXXXTHGRKPSGKITVPDIFKQSTKP 336
            H+  AS V+PSDSPKPYGS RGRARR                    XXXXXXXXXXX RR  QS V+PSAAT           TH RKPSGKITVPD+FKQSTKP
Sbjct:  217 HQVIASGVKPSDSPKPYGSKRGRARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARRPTQSAVQPSAATAVASD------THVRKPSGKITVPDVFKQSTKP 315
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10001.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1U6_9PHAE9.960e-1058.10Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10001contigE-fasciculatus_F_contig10001:296..940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size645
Cds size645
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927502.4125063-CDS-E-fasciculatus_F_contig10001:295..9401622927502.4125063-CDS-E-fasciculatus_F_contig10001:295..940Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10001 296..940 +
1695995565.8045964-CDS-E-fasciculatus_F_contig10001:295..9401695995565.8045964-CDS-E-fasciculatus_F_contig10001:295..940Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10001 296..940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10001.22.1prot_E-fasciculatus_F_contig10001.22.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10001 296..940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10001.22.1

>prot_E-fasciculatus_F_contig10001.22.1 ID=prot_E-fasciculatus_F_contig10001.22.1|Name=mRNA_E-fasciculatus_F_contig10001.22.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=215bp
MVVEEEQRHRSNASSVEPSDSPKPYGSHRGRARRAGAPAGAAAKSATSGT
LPASSSEEEDDDPAARREAQSTVRPSAATANANADADATATHGRKPSGKI
TVPDIFKQSTKPPQQSSAAVTSSAPRGRSKEPRGSGPSSAAATGGGGMSA
SVARSIVDLVSGDGAAKKPSNSERAATAAAAAAAGGVVVGPKSTAPAVAA
RAPPAAPAAAVVDDE
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mRNA from alignment at E-fasciculatus_F_contig10001:296..940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10001.22.1 ID=mRNA_E-fasciculatus_F_contig10001.22.1|Name=mRNA_E-fasciculatus_F_contig10001.22.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=645bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10001:296..940+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGGTGGAGGAGGAGCAGCGGCATCGGTCGAACGCCTCCAGCGTGGA
ACCTTCCGACTCGCCGAAGCCGTACGGGTCCCACCGAGGGAGAGCGAGGC
GCGCCGGCGCGCCGGCCGGCGCGGCCGCGAAGTCGGCGACCTCGGGAACG
CTGCCCGCGTCCTCCTCTGAGGAGGAGGACGATGACCCCGCCGCAAGAAG
AGAAGCTCAGTCGACCGTCCGGCCGTCCGCCGCTACCGCTAACGCTAACG
CTGACGCTGACGCTACCGCCACGCATGGGAGGAAACCGTCCGGGAAGATA
ACCGTTCCCGACATCTTCAAGCAGTCCACCAAGCCCCCGCAACAGTCGTC
AGCTGCGGTGACATCCTCGGCCCCCCGGGGAAGGTCGAAGGAACCCCGTG
GGTCGGGGCCGTCGTCTGCGGCTGCGACGGGCGGCGGCGGGATGTCGGCC
TCCGTCGCCCGTAGCATCGTCGACCTTGTGTCCGGGGACGGGGCCGCGAA
GAAGCCTTCGAATTCCGAGCGTGCCGCAACCGCCGCCGCCGCAGCCGCAG
CCGGCGGTGTTGTGGTTGGTCCGAAGAGCACCGCGCCGGCGGTGGCCGCT
CGAGCTCCGCCGGCCGCGCCGGCGGCGGCTGTTGTTGACGATGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10001:296..940+

>mRNA_E-fasciculatus_F_contig10001.22.1 ID=mRNA_E-fasciculatus_F_contig10001.22.1|Name=mRNA_E-fasciculatus_F_contig10001.22.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1290bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10001:296..940+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGGTGGAGGAGGAGCAGCGGCATCGGTCGAACGCCTCCAGCGTGGA
ACCTTCCGACTCGCCGAAGCCGTACGGGTCCCACCGAGGGAGAGCGAGGC
GCGCCGGCGCGCCGGCCGGCGCGGCCGCGAAGTCGGCGACCTCGGGAACG
CTGCCCGCGTCCTCCTCTGAGGAGGAGGACGATGACCCCGCCGCAAGAAG
AGAAGCTCAGTCGACCGTCCGGCCGTCCGCCGCTACCGCTAACGCTAACG
CTGACGCTGACGCTACCGCCACGCATGGGAGGAAACCGTCCGGGAAGATA
ACCGTTCCCGACATCTTCAAGCAGTCCACCAAGCCCCCGCAACAGTCGTC
AGCTGCGGTGACATCCTCGGCCCCCCGGGGAAGGTCGAAGGAACCCCGTG
GGTCGGGGCCGTCGTCTGCGGCTGCGACGGGCGGCGGCGGGATGTCGGCC
TCCGTCGCCCGTAGCATCGTCGACCTTGTGTCCGGGGACGGGGCCGCGAA
GAAGCCTTCGAATTCCGAGCGTGCCGCAACCGCCGCCGCCGCAGCCGCAG
CCGGCGGTGTTGTGGTTGGTCCGAAGAGCACCGCGCCGGCGGTGGCCGCT
CGAGCTCCGCCGGCCGCGCCGGCGGCGGCTGTTGTTGACGATGAGATGGT
GGTGGAGGAGGAGCAGCGGCATCGGTCGAACGCCTCCAGCGTGGAACCTT
CCGACTCGCCGAAGCCGTACGGGTCCCACCGAGGGAGAGCGAGGCGCGCC
GGCGCGCCGGCCGGCGCGGCCGCGAAGTCGGCGACCTCGGGAACGCTGCC
CGCGTCCTCCTCTGAGGAGGAGGACGATGACCCCGCCGCAAGAAGAGAAG
CTCAGTCGACCGTCCGGCCGTCCGCCGCTACCGCTAACGCTAACGCTGAC
GCTGACGCTACCGCCACGCATGGGAGGAAACCGTCCGGGAAGATAACCGT
TCCCGACATCTTCAAGCAGTCCACCAAGCCCCCGCAACAGTCGTCAGCTG
CGGTGACATCCTCGGCCCCCCGGGGAAGGTCGAAGGAACCCCGTGGGTCG
GGGCCGTCGTCTGCGGCTGCGACGGGCGGCGGCGGGATGTCGGCCTCCGT
CGCCCGTAGCATCGTCGACCTTGTGTCCGGGGACGGGGCCGCGAAGAAGC
CTTCGAATTCCGAGCGTGCCGCAACCGCCGCCGCCGCAGCCGCAGCCGGC
GGTGTTGTGGTTGGTCCGAAGAGCACCGCGCCGGCGGTGGCCGCTCGAGC
TCCGCCGGCCGCGCCGGCGGCGGCTGTTGTTGACGATGAG
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