Homology
BLAST of mRNA_E-fasciculatus_F_contig10001.22.1 vs. uniprot
Match: A0A6H5L1U6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U6_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 9.960e-10 Identity = 61/105 (58.10%), Postives = 65/105 (61.90%), Query Frame = 1 Query: 25 HRSNASSVEPSDSPKPYGSHRGRARRAGAPAGAAAKSATSGTLPASXXXXXXXXXXX-RREAQSTVRPSAATXXXXXXXXXXXTHGRKPSGKITVPDIFKQSTKP 336
H+ AS V+PSDSPKPYGS RGRARR XXXXXXXXXXX RR QS V+PSAAT TH RKPSGKITVPD+FKQSTKP
Sbjct: 217 HQVIASGVKPSDSPKPYGSKRGRARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARRPTQSAVQPSAATAVASD------THVRKPSGKITVPDVFKQSTKP 315
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 645 |
| Cds size | 645 |
| Stop | 0 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10001.22.1 >prot_E-fasciculatus_F_contig10001.22.1 ID=prot_E-fasciculatus_F_contig10001.22.1|Name=mRNA_E-fasciculatus_F_contig10001.22.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=215bp
MVVEEEQRHRSNASSVEPSDSPKPYGSHRGRARRAGAPAGAAAKSATSGT
LPASSSEEEDDDPAARREAQSTVRPSAATANANADADATATHGRKPSGKI
TVPDIFKQSTKPPQQSSAAVTSSAPRGRSKEPRGSGPSSAAATGGGGMSA
SVARSIVDLVSGDGAAKKPSNSERAATAAAAAAAGGVVVGPKSTAPAVAA
RAPPAAPAAAVVDDE back to topmRNA from alignment at E-fasciculatus_F_contig10001:296..940+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10001.22.1 ID=mRNA_E-fasciculatus_F_contig10001.22.1|Name=mRNA_E-fasciculatus_F_contig10001.22.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=645bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10001:296..940+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGGTGGAGGAGGAGCAGCGGCATCGGTCGAACGCCTCCAGCGTGGA
ACCTTCCGACTCGCCGAAGCCGTACGGGTCCCACCGAGGGAGAGCGAGGC
GCGCCGGCGCGCCGGCCGGCGCGGCCGCGAAGTCGGCGACCTCGGGAACG
CTGCCCGCGTCCTCCTCTGAGGAGGAGGACGATGACCCCGCCGCAAGAAG
AGAAGCTCAGTCGACCGTCCGGCCGTCCGCCGCTACCGCTAACGCTAACG
CTGACGCTGACGCTACCGCCACGCATGGGAGGAAACCGTCCGGGAAGATA
ACCGTTCCCGACATCTTCAAGCAGTCCACCAAGCCCCCGCAACAGTCGTC
AGCTGCGGTGACATCCTCGGCCCCCCGGGGAAGGTCGAAGGAACCCCGTG
GGTCGGGGCCGTCGTCTGCGGCTGCGACGGGCGGCGGCGGGATGTCGGCC
TCCGTCGCCCGTAGCATCGTCGACCTTGTGTCCGGGGACGGGGCCGCGAA
GAAGCCTTCGAATTCCGAGCGTGCCGCAACCGCCGCCGCCGCAGCCGCAG
CCGGCGGTGTTGTGGTTGGTCCGAAGAGCACCGCGCCGGCGGTGGCCGCT
CGAGCTCCGCCGGCCGCGCCGGCGGCGGCTGTTGTTGACGATGAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10001:296..940+ >mRNA_E-fasciculatus_F_contig10001.22.1 ID=mRNA_E-fasciculatus_F_contig10001.22.1|Name=mRNA_E-fasciculatus_F_contig10001.22.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1290bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10001:296..940+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGGTGGAGGAGGAGCAGCGGCATCGGTCGAACGCCTCCAGCGTGGA
ACCTTCCGACTCGCCGAAGCCGTACGGGTCCCACCGAGGGAGAGCGAGGC
GCGCCGGCGCGCCGGCCGGCGCGGCCGCGAAGTCGGCGACCTCGGGAACG
CTGCCCGCGTCCTCCTCTGAGGAGGAGGACGATGACCCCGCCGCAAGAAG
AGAAGCTCAGTCGACCGTCCGGCCGTCCGCCGCTACCGCTAACGCTAACG
CTGACGCTGACGCTACCGCCACGCATGGGAGGAAACCGTCCGGGAAGATA
ACCGTTCCCGACATCTTCAAGCAGTCCACCAAGCCCCCGCAACAGTCGTC
AGCTGCGGTGACATCCTCGGCCCCCCGGGGAAGGTCGAAGGAACCCCGTG
GGTCGGGGCCGTCGTCTGCGGCTGCGACGGGCGGCGGCGGGATGTCGGCC
TCCGTCGCCCGTAGCATCGTCGACCTTGTGTCCGGGGACGGGGCCGCGAA
GAAGCCTTCGAATTCCGAGCGTGCCGCAACCGCCGCCGCCGCAGCCGCAG
CCGGCGGTGTTGTGGTTGGTCCGAAGAGCACCGCGCCGGCGGTGGCCGCT
CGAGCTCCGCCGGCCGCGCCGGCGGCGGCTGTTGTTGACGATGAGATGGT
GGTGGAGGAGGAGCAGCGGCATCGGTCGAACGCCTCCAGCGTGGAACCTT
CCGACTCGCCGAAGCCGTACGGGTCCCACCGAGGGAGAGCGAGGCGCGCC
GGCGCGCCGGCCGGCGCGGCCGCGAAGTCGGCGACCTCGGGAACGCTGCC
CGCGTCCTCCTCTGAGGAGGAGGACGATGACCCCGCCGCAAGAAGAGAAG
CTCAGTCGACCGTCCGGCCGTCCGCCGCTACCGCTAACGCTAACGCTGAC
GCTGACGCTACCGCCACGCATGGGAGGAAACCGTCCGGGAAGATAACCGT
TCCCGACATCTTCAAGCAGTCCACCAAGCCCCCGCAACAGTCGTCAGCTG
CGGTGACATCCTCGGCCCCCCGGGGAAGGTCGAAGGAACCCCGTGGGTCG
GGGCCGTCGTCTGCGGCTGCGACGGGCGGCGGCGGGATGTCGGCCTCCGT
CGCCCGTAGCATCGTCGACCTTGTGTCCGGGGACGGGGCCGCGAAGAAGC
CTTCGAATTCCGAGCGTGCCGCAACCGCCGCCGCCGCAGCCGCAGCCGGC
GGTGTTGTGGTTGGTCCGAAGAGCACCGCGCCGGCGGTGGCCGCTCGAGC
TCCGCCGGCCGCGCCGGCGGCGGCTGTTGTTGACGATGAG back to top
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