prot_E-fasciculatus_F_contig12882.2172.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12882.2172.1
Unique Nameprot_E-fasciculatus_F_contig12882.2172.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length69
Homology
BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: D7G152_ECTSI (Mcl1_mid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G152_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 5.230e-20
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 0
Query:    5 KESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFHQ 63
            +ESV++V+VGRGW AAATNRQLVRLFSASGLQ + TIMLPGPVVSMVG GDVLMV FH+
Sbjct:  446 EESVVSVAVGRGWVAAATNRQLVRLFSASGLQGE-TIMLPGPVVSMVGSGDVLMVAFHK 503          
BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: I2CRV7_NANGC (Wd repeat and hmg-box dna-binding protein 1 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRV7_NANGC)

HSP 1 Score: 65.5 bits (158), Expect = 1.950e-11
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 0
Query:    2 MPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFH 62
            +P KE  L V+VG  W A AT RQ VRLF+ SGLQ +  + +PGPVV+MVG G++L V +H
Sbjct:   40 LPKKEGALCVAVGARWTAVATTRQWVRLFTFSGLQ-EGVLAMPGPVVTMVGQGELLAVFYH 99          
BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: A0A8B9I777_9AVES (WD repeat and HMG-box DNA binding protein 1 n=4 Tax=Anser TaxID=8842 RepID=A0A8B9I777_9AVES)

HSP 1 Score: 66.6 bits (161), Expect = 3.340e-11
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 0
Query:    2 MPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFHQ 63
            MP  E + A+ +G+GWAA AT+  LVRLF+A G+Q +    LPGPVVSM G G+ LMV++H+
Sbjct:  523 MPKDEDIEAICLGQGWAACATSALLVRLFTAGGVQKE-IFSLPGPVVSMAGHGEQLMVIYHR 583          
BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: A0A1S3EUS0_DIPOR (WD repeat and HMG-box DNA-binding protein 1 n=1 Tax=Dipodomys ordii TaxID=10020 RepID=A0A1S3EUS0_DIPOR)

HSP 1 Score: 66.2 bits (160), Expect = 4.540e-11
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 0
Query:    2 MPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFHQ 63
            MP  E + A+ +G+GWAAAAT+  L+RLFS  G+Q +    LPGPVVSM G G+ L++VFH+
Sbjct:  376 MPQHEDIEAICLGQGWAAAATSALLLRLFSIGGVQKE-IFSLPGPVVSMAGHGEQLLIVFHR 436          
BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: UPI0020187598 (LOW QUALITY PROTEIN: WD repeat and HMG-box DNA-binding protein 1 n=1 Tax=Perognathus longimembris pacificus TaxID=214514 RepID=UPI0020187598)

HSP 1 Score: 66.2 bits (160), Expect = 4.560e-11
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 0
Query:    2 MPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFHQ 63
            MP  E + A+ +G+GWAAAAT+  L+RLFS  G+Q +    LPGPVVSM G G+ L++VFH+
Sbjct:  525 MPQHEDIEAICLGQGWAAAATSALLLRLFSIGGVQKE-IFSLPGPVVSMAGHGEQLLIVFHR 585          
BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: A0A6I9JT32_CHRAS (WD repeat and HMG-box DNA-binding protein 1 n=1 Tax=Chrysochloris asiatica TaxID=185453 RepID=A0A6I9JT32_CHRAS)

HSP 1 Score: 66.2 bits (160), Expect = 4.560e-11
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 0
Query:    2 MPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFHQ 63
            MP  E V A+ +G GWAAAATN  L+RLF+  G+Q +    LPGPVVSM G G+ L++V+H+
Sbjct:  529 MPQNEDVEAICLGHGWAAAATNALLLRLFTIGGVQKE-IFSLPGPVVSMAGHGEQLLIVYHR 589          
BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: UPI001C545552 (WD repeat and HMG-box DNA-binding protein 1 n=1 Tax=Dipodomys spectabilis TaxID=105255 RepID=UPI001C545552)

HSP 1 Score: 66.2 bits (160), Expect = 4.560e-11
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 0
Query:    2 MPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFHQ 63
            MP  E + A+ +G+GWAAAAT+  L+RLFS  G+Q +    LPGPVVSM G G+ L++VFH+
Sbjct:  526 MPQHEDIEAICLGQGWAAAATSALLLRLFSIGGVQKE-IFSLPGPVVSMAGHGEQLLIVFHR 586          
BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: A0A8C5T7S7_9PASS (WD repeat and HMG-box DNA binding protein 1 n=1 Tax=Malurus cyaneus samueli TaxID=2593467 RepID=A0A8C5T7S7_9PASS)

HSP 1 Score: 65.9 bits (159), Expect = 6.230e-11
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 0
Query:    2 MPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFHQ 63
            MP  E + A+ +G+GWAA ATN  LVR+F+  G+Q +    LPGPVVSM G G+ LM+V+H+
Sbjct:  524 MPKDEEIEAICLGQGWAACATNALLVRVFTVGGVQKE-IFSLPGPVVSMAGHGEQLMIVYHR 584          
BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: A0A4D9D6X1_9STRA (Mcl1_mid domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6X1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 8.500e-11
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 0
Query:    2 MPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFH 62
            +P KE  L V+VG  W A AT RQ VRLF+ SGLQ +  + +PGPVV+MVG G++L V +H
Sbjct:  527 LPKKEGALCVAVGARWTAVATTRQWVRLFTFSGLQ-EGVLAMPGPVVTMVGQGELLAVFYH 586          
BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: A0A8C5JY46_JACJA (WD repeat and HMG-box DNA binding protein 1 n=1 Tax=Jaculus jaculus TaxID=51337 RepID=A0A8C5JY46_JACJA)

HSP 1 Score: 65.5 bits (158), Expect = 8.510e-11
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 0
Query:    2 MPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFHQ 63
            MP  E + A+ +G+GWAAAAT+  L+RLFS  G+Q +    LPGPVVSM G G+ L++V+H+
Sbjct:  477 MPQDEDIEAICLGQGWAAAATSALLLRLFSIGGVQKE-VFCLPGPVVSMAGHGEQLLIVYHR 537          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G152_ECTSI5.230e-2081.36Mcl1_mid domain-containing protein n=1 Tax=Ectocar... [more]
I2CRV7_NANGC1.950e-1154.10Wd repeat and hmg-box dna-binding protein 1 (Fragm... [more]
A0A8B9I777_9AVES3.340e-1153.23WD repeat and HMG-box DNA binding protein 1 n=4 Ta... [more]
A0A1S3EUS0_DIPOR4.540e-1153.23WD repeat and HMG-box DNA-binding protein 1 n=1 Ta... [more]
UPI00201875984.560e-1153.23LOW QUALITY PROTEIN: WD repeat and HMG-box DNA-bin... [more]
A0A6I9JT32_CHRAS4.560e-1153.23WD repeat and HMG-box DNA-binding protein 1 n=1 Ta... [more]
UPI001C5455524.560e-1153.23WD repeat and HMG-box DNA-binding protein 1 n=1 Ta... [more]
A0A8C5T7S7_9PASS6.230e-1151.61WD repeat and HMG-box DNA binding protein 1 n=1 Ta... [more]
A0A4D9D6X1_9STRA8.500e-1154.10Mcl1_mid domain-containing protein n=3 Tax=Monodop... [more]
A0A8C5JY46_JACJA8.510e-1151.61WD repeat and HMG-box DNA binding protein 1 n=1 Ta... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022100Minichromosome loss protein Mcl1, middle regionPFAMPF12341Mcl1_midcoord: 2..64
e-value: 4.3E-15
score: 55.8
NoneNo IPR availablePANTHERPTHR19932WD REPEAT AND HMG-BOX DNA BINDING PROTEINcoord: 2..63
NoneNo IPR availablePANTHERPTHR19932:SF10WD REPEAT AND HMG-BOX DNA-BINDING PROTEIN 1coord: 2..63
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 62..68
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 42..61
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..41
NoneNo IPR availableTMHMMTMhelixcoord: 40..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12882contigE-fasciculatus_F_contig12882:2561..3504 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12882.2172.1mRNA_E-fasciculatus_F_contig12882.2172.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12882 2561..3519 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12882.2172.1 ID=prot_E-fasciculatus_F_contig12882.2172.1|Name=mRNA_E-fasciculatus_F_contig12882.2172.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=69bp
MMPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSM
VGGGDVLMVVFHQVKRTM*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022100Mcl1_mid