mRNA_E-fasciculatus_F_contig12882.2172.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12882.2172.1
Unique NamemRNA_E-fasciculatus_F_contig12882.2172.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: D7G152_ECTSI (Mcl1_mid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G152_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.860e-20
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:   28 KESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFHQ 204
            +ESV++V+VGRGW AAATNRQLVRLFSASGLQ + TIMLPGPVVSMVG GDVLMV FH+
Sbjct:  446 EESVVSVAVGRGWVAAATNRQLVRLFSASGLQGE-TIMLPGPVVSMVGSGDVLMVAFHK 503
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BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: A0A8B9I777_9AVES (WD repeat and HMG-box DNA binding protein 1 n=4 Tax=Anser TaxID=8842 RepID=A0A8B9I777_9AVES)

HSP 1 Score: 71.6 bits (174), Expect = 7.100e-13
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    7 WTRMMPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFHQ 204
            WT  MP  E + A+ +G+GWAA AT+  LVRLF+A G+Q +    LPGPVVSM G G+ LMV++H+
Sbjct:  519 WTVDMPKDEDIEAICLGQGWAACATSALLVRLFTAGGVQKE-IFSLPGPVVSMAGHGEQLMVIYHR 583
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BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: I2CRV7_NANGC (Wd repeat and hmg-box dna-binding protein 1 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRV7_NANGC)

HSP 1 Score: 69.3 bits (168), Expect = 7.940e-13
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    7 WTRMMPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFH 201
            W   +P KE  L V+VG  W A AT RQ VRLF+ SGLQ +  + +PGPVV+MVG G++L V +H
Sbjct:   36 WLYTLPKKEGALCVAVGARWTAVATTRQWVRLFTFSGLQ-EGVLAMPGPVVTMVGQGELLAVFYH 99
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BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: A0A6I9JT32_CHRAS (WD repeat and HMG-box DNA-binding protein 1 n=1 Tax=Chrysochloris asiatica TaxID=185453 RepID=A0A6I9JT32_CHRAS)

HSP 1 Score: 71.2 bits (173), Expect = 9.700e-13
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    7 WTRMMPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFHQ 204
            WT  MP  E V A+ +G GWAAAATN  L+RLF+  G+Q +    LPGPVVSM G G+ L++V+H+
Sbjct:  525 WTVDMPQNEDVEAICLGHGWAAAATNALLLRLFTIGGVQKE-IFSLPGPVVSMAGHGEQLLIVYHR 589
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BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: A0A8C5T7S7_9PASS (WD repeat and HMG-box DNA binding protein 1 n=1 Tax=Malurus cyaneus samueli TaxID=2593467 RepID=A0A8C5T7S7_9PASS)

HSP 1 Score: 70.9 bits (172), Expect = 1.320e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    7 WTRMMPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFHQ 204
            WT  MP  E + A+ +G+GWAA ATN  LVR+F+  G+Q +    LPGPVVSM G G+ LM+V+H+
Sbjct:  520 WTVDMPKDEEIEAICLGQGWAACATNALLVRVFTVGGVQKE-IFSLPGPVVSMAGHGEQLMIVYHR 584
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BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: A0A7L0RU36_GLABR (WDHD1 protein (Fragment) n=1 Tax=Glaucidium brasilianum TaxID=78217 RepID=A0A7L0RU36_GLABR)

HSP 1 Score: 70.5 bits (171), Expect = 1.810e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    7 WTRMMPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFHQ 204
            WT  MP  E V A+ +G+GWAA AT+  LVR+F+  G+Q +    LPGPVVSM G GD LM+++H+
Sbjct:  516 WTVDMPEDEDVEAICLGQGWAACATSALLVRVFTVGGVQKE-IFSLPGPVVSMAGHGDQLMIIYHR 580
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BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: F6SHH8_ORNAN (WD repeat and HMG-box DNA binding protein 1 n=4 Tax=Monotremata TaxID=9255 RepID=F6SHH8_ORNAN)

HSP 1 Score: 70.1 bits (170), Expect = 2.470e-12
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    7 WTRMMPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFHQ 204
            WT  MP  E + AV +G+GWAA+AT+  LVR+F+  G+Q +    LPGPVVSM G G+ L++V+H+
Sbjct:  514 WTVDMPKGEDIQAVCLGQGWAASATSTSLVRIFTVGGIQKE-IFSLPGPVVSMAGHGEQLLIVYHR 578
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BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: A0A7K8NEH2_CASCA (WDHD1 protein (Fragment) n=1 Tax=Casuarius casuarius TaxID=8787 RepID=A0A7K8NEH2_CASCA)

HSP 1 Score: 70.1 bits (170), Expect = 2.470e-12
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    7 WTRMMPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFHQ 204
            WT  MP  E + A+ +G+GWAA AT+  LVR+F+  G+Q +    LPGPVVSM G GD LM+++H+
Sbjct:  516 WTVDMPEDEDIEAICLGQGWAACATSALLVRVFTVGGVQKE-IFSLPGPVVSMAGHGDQLMIIYHR 580
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: A0A7L0WSI8_ALELA (WDHD1 protein (Fragment) n=1 Tax=Alectura lathami TaxID=81907 RepID=A0A7L0WSI8_ALELA)

HSP 1 Score: 70.1 bits (170), Expect = 2.470e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    7 WTRMMPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFHQ 204
            WT  MP  E + A+ +G+GWAA AT+  LVRLF+  G+Q +    LPGPVVSM G G+ LM+V+H+
Sbjct:  514 WTVDMPKDEDIEAICLGQGWAACATSALLVRLFTVGGVQKE-IFSLPGPVVSMAGHGEQLMIVYHR 578
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Match: A0A1D5PDL4_CHICK (HMG box domain-containing protein n=2 Tax=Gallus gallus TaxID=9031 RepID=A0A1D5PDL4_CHICK)

HSP 1 Score: 70.1 bits (170), Expect = 2.470e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    7 WTRMMPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSMVGGGDVLMVVFHQ 204
            WT  MP  E + A+ +G+GWAA AT+  LVRLF+  G+Q +    LPGPVVSM G G+ LMV++H+
Sbjct:  519 WTVDMPKDEDIEAICLGQGWAACATSALLVRLFTVGGVQKE-IFCLPGPVVSMAGHGEQLMVIYHR 583
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12882.2172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G152_ECTSI1.860e-2081.36Mcl1_mid domain-containing protein n=1 Tax=Ectocar... [more]
A0A8B9I777_9AVES7.100e-1353.03WD repeat and HMG-box DNA binding protein 1 n=4 Ta... [more]
I2CRV7_NANGC7.940e-1352.31Wd repeat and hmg-box dna-binding protein 1 (Fragm... [more]
A0A6I9JT32_CHRAS9.700e-1353.03WD repeat and HMG-box DNA-binding protein 1 n=1 Ta... [more]
A0A8C5T7S7_9PASS1.320e-1251.52WD repeat and HMG-box DNA binding protein 1 n=1 Ta... [more]
A0A7L0RU36_GLABR1.810e-1251.52WDHD1 protein (Fragment) n=1 Tax=Glaucidium brasil... [more]
F6SHH8_ORNAN2.470e-1250.00WD repeat and HMG-box DNA binding protein 1 n=4 Ta... [more]
A0A7K8NEH2_CASCA2.470e-1250.00WDHD1 protein (Fragment) n=1 Tax=Casuarius casuari... [more]
A0A7L0WSI8_ALELA2.470e-1251.52WDHD1 protein (Fragment) n=1 Tax=Alectura lathami ... [more]
A0A1D5PDL4_CHICK2.470e-1251.52HMG box domain-containing protein n=2 Tax=Gallus g... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12882contigE-fasciculatus_F_contig12882:2561..3519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue8.7e-17
Seed eggNOG ortholog2880.D7G152
Preferred nameWDHD1
KEGG koko:K11274
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000727,GO:0000775,GO:0000785,GO:0000790,GO:0000819,GO:0000981,GO:0001302,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003700,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006273,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006357,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007275,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0019219,GO:0019222,GO:0019899,GO:0022402,GO:0022616,GO:0030702,GO:0031298,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033260,GO:0033301,GO:0033554,GO:0033567,GO:0034085,GO:0034641,GO:0034645,GO:0035185,GO:0040029,GO:0042023,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043954,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045448,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060255,GO:0061641,GO:0065007,GO:0070013,GO:0070063,GO:0070827,GO:0070828,GO:0070829,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0098687,GO:0098813,GO:0140014,GO:0140110,GO:1901360,GO:1901363,GO:1901576,GO:1902679,GO:1902969,GO:1903047,GO:1903461,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.heterochromatin maintenance
EggNOG OGsKOG1274@1,KOG1274@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12882.2172.1prot_E-fasciculatus_F_contig12882.2172.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12882 2561..3504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927791.5593681-CDS-E-fasciculatus_F_contig12882:2560..26501622927791.5593681-CDS-E-fasciculatus_F_contig12882:2560..2650Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12882 2561..2650 -
1695995696.3715057-CDS-E-fasciculatus_F_contig12882:2560..26501695995696.3715057-CDS-E-fasciculatus_F_contig12882:2560..2650Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12882 2561..2650 -
1622927791.5713997-CDS-E-fasciculatus_F_contig12882:3387..35041622927791.5713997-CDS-E-fasciculatus_F_contig12882:3387..3504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12882 3388..3504 -
1695995696.3823025-CDS-E-fasciculatus_F_contig12882:3387..35041695995696.3823025-CDS-E-fasciculatus_F_contig12882:3387..3504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12882 3388..3504 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927791.5853703-UTR-E-fasciculatus_F_contig12882:3504..35191622927791.5853703-UTR-E-fasciculatus_F_contig12882:3504..3519Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12882 3505..3519 -
1695995696.3915086-UTR-E-fasciculatus_F_contig12882:3504..35191695995696.3915086-UTR-E-fasciculatus_F_contig12882:3504..3519Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12882 3505..3519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12882.2172.1

>prot_E-fasciculatus_F_contig12882.2172.1 ID=prot_E-fasciculatus_F_contig12882.2172.1|Name=mRNA_E-fasciculatus_F_contig12882.2172.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=69bp
MMPSKESVLAVSVGRGWAAAATNRQLVRLFSASGLQVDNTIMLPGPVVSM
VGGGDVLMVVFHQVKRTM*
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mRNA from alignment at E-fasciculatus_F_contig12882:2561..3519-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12882.2172.1 ID=mRNA_E-fasciculatus_F_contig12882.2172.1|Name=mRNA_E-fasciculatus_F_contig12882.2172.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=959bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12882:2561..3519- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCAGCTGGACGCGCATGATGCCTTCGAAGGAGAGCGTGCTGGCGGTGTC
GGTGGGGAGAGGGTGGGCGGCGGCGGCGACTAACCGCCAGCTGGTCAGGC
TCTTCTCGGCTAGCGGGCTGCAGGTGGACAACGTTTGTTTCCTTCCTTCT
GTGACACAACGACTACTCCATCTCTACATTCACTGATGAGGGGTCCAGGA
TAGAAATAGGAATTAATCCGTTTGCGATAGCGTGGGCACAAATACTGCTG
TACCTGTACCTGTGTGTCTACGATTCACCGAGCAACACATGGCGATATCT
CCCCTTGTGCAACGGGCTTGTTATGATTGGTTTGTCTTTTGTCCTCTTTG
AACCAGGAGTCGATAGTGCGTATTTCGCAGGGGCAAAGGGTTGCCGATAC
GTAATAGTGCTCGTGTGTTCGTTAGGTCCTGTTTATGGCCTTGACCGCTC
TGCCCGGCTCACCATTGCAACGCCGCAAGGGTCTTGCTGCTGTGATATTT
CTGTGGAATGATAGGGTATGGAATTGGTGGATACATGCTGCGTGTGCGCG
CTGTCCCAGGGGCCTGTGTTTTCGAAGTTCACAGGCATTTCGAGAGATGT
CCATTATTTATTTATTTGTTTGCTGTTGTTTCGCGGTATTTCAGAAACGA
AAGCCATCAATCTCTATGCACCGCACAAGAGGTTTCAATGGCCTGGTTTG
GTCCTCCTTCCGTTGGACCGACCGTGCAAACACCTGTTTCCATTTCTTCG
CTACAACGTTTGGATGGCGTGCGTCTTGCCCTGAAACTTGTTCTTTTCGC
GTCTTGGTTATCGTCGTGTATATGTATGGTGGTGCCCTTCTTTTTGGCGA
ATGCACTACACAGGGGGAGACAATCATGCTGCCGGGTCCGGTGGTGTCGA
TGGTCGGCGGGGGCGACGTGCTCATGGTGGTGTTCCACCAGGTAAAACGA
ACGATGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12882:2561..3519-

>mRNA_E-fasciculatus_F_contig12882.2172.1 ID=mRNA_E-fasciculatus_F_contig12882.2172.1|Name=mRNA_E-fasciculatus_F_contig12882.2172.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12882:2561..3519- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGCCTTCGAAGGAGAGCGTGCTGGCGGTGTCGGTGGGGAGAGGGTG
GGCGGCGGCGGCGACTAACCGCCAGCTGGTCAGGCTCTTCTCGGCTAGCG
GGCTGCAGGTGGACAACATGATGCCTTCGAAGGAGAGCGTGCTGGCGGTG
TCGGTGGGGAGAGGGTGGGCGGCGGCGGCGACTAACCGCCAGCTGGTCAG
GCTCTTCTCGGCTAGCGGGCTGCAGGTGGACAACACAATCATGCTGCCGG
GTCCGGTGGTGTCGATGGTCGGCGGGGGCGACGTGCTCATGGTGGTGTTC
CACCAGGTAAAACGAACGATGTGAACAATCATGCTGCCGGGTCCGGTGGT
GTCGATGGTCGGCGGGGGCGACGTGCTCATGGTGGTGTTCCACCAGGTAA
AACGAACGATGTGA
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