mRNA_E-fasciculatus_F_contig12870.2167.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12870.2167.1
Unique NamemRNA_E-fasciculatus_F_contig12870.2167.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: D8LBC7_ECTSI (tRNA Pseudouridine Synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBC7_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.590e-36
Identity = 69/82 (84.15%), Postives = 70/82 (85.37%), Query Frame = 1
Query:    1 GEGGVASSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 246
            GEG          VALLISYWGNNYQGLQIN+GARTIEAELELALYLAG ISKDNFGNPRKVSWSRAGRTDKGVHAAAQV S
Sbjct:  180 GEGXXXXXXXXXXVALLISYWGNNYQGLQINKGARTIEAELELALYLAGTISKDNFGNPRKVSWSRAGRTDKGVHAAAQVIS 261          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A1Y1HNE8_KLENI (Pseudouridylate synthase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HNE8_KLENI)

HSP 1 Score: 103 bits (257), Expect = 5.710e-24
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   19 SSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 246
            S   K+KVAL  +Y G  YQG+Q N GA+TIEAELELALY AGAI+KDNFG+P+KV W R+ RTDKGV A  QV S
Sbjct:   53 SKFKKRKVALFFAYIGAGYQGMQRNPGAKTIEAELELALYKAGAITKDNFGDPKKVHWMRSARTDKGVSAVGQVVS 128          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: K8YPP2_NANGC (Trna pseudouridine synthase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YPP2_NANGC)

HSP 1 Score: 100 bits (249), Expect = 2.250e-23
Identity = 46/71 (64.79%), Postives = 59/71 (83.10%), Query Frame = 1
Query:   28 SKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQV 240
            +KKKVA++I Y G ++QG+Q+N GA TIEAELE A+Y AG I + NFG+ +K+ WSR+GRTDKGVHAAAQV
Sbjct:   89 NKKKVAMIIGYCGTDFQGMQMNPGAITIEAELEKAMYEAGCIKEANFGSLQKIGWSRSGRTDKGVHAAAQV 159          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A176VP40_MARPO (PseudoU_synth_1 domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VP40_MARPO)

HSP 1 Score: 101 bits (251), Expect = 3.550e-23
Identity = 50/82 (60.98%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 GEGGVASSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 246
            GE G      K+K+A++++Y G  YQG+Q N GA TIE ELE ALY AGAISK+NFG PRKV W RA RTDKGV A  QV S
Sbjct:  112 GEAGNTKRLKKRKIAMIVAYCGAAYQGMQRNPGAITIEGELEQALYRAGAISKENFGVPRKVDWMRAARTDKGVSAIGQVVS 193          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A4D9D7P8_9STRA (PseudoU_synth_1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7P8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 7.250e-23
Identity = 46/71 (64.79%), Postives = 59/71 (83.10%), Query Frame = 1
Query:   28 SKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQV 240
            +KKKVA++I Y G ++QG+Q+N GA TIEAELE A+Y AG I + NFG+ +K+ WSR+GRTDKGVHAAAQV
Sbjct:   96 NKKKVAMIIGYCGTDFQGMQMNPGAITIEAELEKAMYEAGCIKEANFGSLQKIGWSRSGRTDKGVHAAAQV 166          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A7S2INJ9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2INJ9_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 4.220e-22
Identity = 46/75 (61.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   22 SSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 246
            S+ K+KVALL++Y G  Y GLQIN    TIE  LE A++ AG IS+ N G  +KVSWSRAGRTDKGVHAA Q+ S
Sbjct:   22 SNPKRKVALLLAYNGAGYSGLQINPDVETIEKTLEAAIFRAGGISEANHGVLQKVSWSRAGRTDKGVHAAGQIIS 96          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A7S1ET85_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ET85_9RHOD)

HSP 1 Score: 98.2 bits (243), Expect = 4.630e-22
Identity = 48/76 (63.16%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   19 SSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 246
            S+  K+KVAL +SY G  Y G+Q N G RTIE ELE A+Y AG ISKDN+G  +KV WSRA RTDKGV AA QV S
Sbjct:   45 SALKKRKVALFVSYLGEGYSGMQKNPGVRTIEDELEYAVYQAGGISKDNYGQLQKVHWSRAARTDKGVSAAGQVVS 120          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A7S1TVP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVP3_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.170e-21
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = 1
Query:   31 KKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 246
            KK++AL+  Y G  + GLQIN G RT+EAELELA++ AGA+  +NFGN +K+SW+RA RTDKGVHAA  V S
Sbjct:  118 KKRLALIFGYNGKRFSGLQINPGQRTVEAELELAMFKAGAVRNENFGNLQKLSWTRACRTDKGVHAATNVAS 189          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A7S4KAH0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KAH0_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.390e-21
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   13 VASSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 246
              ++  K+KVALL+++ G +YQG+QIN  +R+I+AE+ELALY AG +++ NFG P K  WS + RTDKGVH+ AQV S
Sbjct:   84 AVATGPKRKVALLLAFLGTDYQGMQINASSRSIQAEVELALYRAGLLARSNFGYPHKYGWSNSARTDKGVHSCAQVCS 161          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A1E7FH56_9STRA (Pseudouridine synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH56_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.000e-21
Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   31 KKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 246
            K+KVALL+ + G  Y G QIN   +TI+AE+ELALY +G ISKDNFG   K SWS + RTDKGVHA AQV S
Sbjct:   36 KRKVALLLGFLGTKYGGFQINPEQKTIQAEMELALYRSGMISKDNFGTQHKYSWSNSARTDKGVHACAQVCS 107          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBC7_ECTSI1.590e-3684.15tRNA Pseudouridine Synthase n=2 Tax=Ectocarpus Tax... [more]
A0A1Y1HNE8_KLENI5.710e-2465.79Pseudouridylate synthase n=1 Tax=Klebsormidium nit... [more]
K8YPP2_NANGC2.250e-2364.79Trna pseudouridine synthase (Fragment) n=1 Tax=Nan... [more]
A0A176VP40_MARPO3.550e-2360.98PseudoU_synth_1 domain-containing protein n=2 Tax=... [more]
A0A4D9D7P8_9STRA7.250e-2364.79PseudoU_synth_1 domain-containing protein n=2 Tax=... [more]
A0A7S2INJ9_9EUKA4.220e-2261.33Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S1ET85_9RHOD4.630e-2263.16Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A7S1TVP3_9STRA1.170e-2161.11Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4KAH0_9STRA1.390e-2153.85Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A1E7FH56_9STRA2.000e-2162.50Pseudouridine synthase n=1 Tax=Fragilariopsis cyli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12870contigE-fasciculatus_F_contig12870:473..1054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue8e-17
Seed eggNOG ortholog157072.XP_008861008.1
Preferred namePUS1
KEGG koko:K06173,ko:K20674
KEGG Pathwayko04624,map04624
GOsGO:0000049,GO:0000959,GO:0000963,GO:0001522,GO:0002153,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003727,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009982,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0019219,GO:0019222,GO:0030374,GO:0031119,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070525,GO:0070900,GO:0070902,GO:0071704,GO:0080090,GO:0090304,GO:0090646,GO:0097159,GO:0106029,GO:0140053,GO:0140098,GO:0140101,GO:0140110,GO:1900864,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990481,GO:2000112,GO:2001141
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0101@1,KOG2553@2759
EC5.4.99.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927790.8296149-CDS-E-fasciculatus_F_contig12870:472..6321622927790.8296149-CDS-E-fasciculatus_F_contig12870:472..632Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12870 473..632 -
1695995695.9709613-CDS-E-fasciculatus_F_contig12870:472..6321695995695.9709613-CDS-E-fasciculatus_F_contig12870:472..632Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12870 473..632 -
1622927790.8441746-CDS-E-fasciculatus_F_contig12870:965..10541622927790.8441746-CDS-E-fasciculatus_F_contig12870:965..1054Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12870 966..1054 -
1695995695.9814935-CDS-E-fasciculatus_F_contig12870:965..10541695995695.9814935-CDS-E-fasciculatus_F_contig12870:965..1054Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12870 966..1054 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12870.2167.1prot_E-fasciculatus_F_contig12870.2167.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12870 473..1054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12870.2167.1

>prot_E-fasciculatus_F_contig12870.2167.1 ID=prot_E-fasciculatus_F_contig12870.2167.1|Name=mRNA_E-fasciculatus_F_contig12870.2167.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=83bp
GEGGVASSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGA
ISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS*
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mRNA from alignment at E-fasciculatus_F_contig12870:473..1054-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12870.2167.1 ID=mRNA_E-fasciculatus_F_contig12870.2167.1|Name=mRNA_E-fasciculatus_F_contig12870.2167.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=582bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12870:473..1054- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGAGGGCGGAGTGGCATCGAGCTCGAGCAAGAAGAAAGTAGCCCTGCT GATTTCCTACTGGGGCAACAACTACCAGGGTTTGCAAATGTAAGTGGGGG CAAATTGGGGCGGGCCTGCTACAGCCGGGACGGCACAAACAGAACGGCGG CTCGTTTTTTTTGTGTGTTTTTACTCTTGTGCAAGATGCTCTCGAGCAAA TGGCACGACGTCAGTACGTCGGCGGCGGGAGCATCCTGCACACCACGGTG CTGCTGCTGATATGTTTATTTCAATGCTTGGTCGCGAAGAGTAGGATGTC ATTCGGCCACCGAAGTGGCTTTCGGTGTGTCAGCCCGTGGCTTATGGAAA AGGTTTCTTTTGGCTCACGTGAGAGTTTGTCGATACTACTGCCGTGTTTC GGTTTGTCTGTTTGCGCCGCAGAAACGAGGGTGCCAGGACCATCGAAGCG GAACTGGAGCTAGCCCTGTACCTGGCGGGGGCAATCAGCAAGGACAACTT CGGGAACCCGAGGAAAGTTTCTTGGTCCCGCGCCGGCCGTACCGACAAGG GCGTCCACGCCGCAGCACAGGTGACATCGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12870:473..1054-

>mRNA_E-fasciculatus_F_contig12870.2167.1 ID=mRNA_E-fasciculatus_F_contig12870.2167.1|Name=mRNA_E-fasciculatus_F_contig12870.2167.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12870:473..1054- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGAGGGCGGAGTGGCATCGAGCTCGAGCAAGAAGAAAGTAGCCCTGCT
GATTTCCTACTGGGGCAACAACTACCAGGGTTTGCAAATGGGGAGGGCGG
AGTGGCATCGAGCTCGAGCAAGAAGAAAGTAGCCCTGCTGATTTCCTACT
GGGGCAACAACTACCAGGGTTTGCAAATAAACGAGGGTGCCAGGACCATC
GAAGCGGAACTGGAGCTAGCCCTGTACCTGGCGGGGGCAATCAGCAAGGA
CAACTTCGGGAACCCGAGGAAAGTTTCTTGGTCCCGCGCCGGCCGTACCG
ACAAGGGCGTCCACGCCGCAGCACAGGTGACATCGTAGAAACGAGGGTGC
CAGGACCATCGAAGCGGAACTGGAGCTAGCCCTGTACCTGGCGGGGGCAA
TCAGCAAGGACAACTTCGGGAACCCGAGGAAAGTTTCTTGGTCCCGCGCC
GGCCGTACCGACAAGGGCGTCCACGCCGCAGCACAGGTGACATCGTAG
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