prot_E-fasciculatus_F_contig12870.2167.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12870.2167.1
Unique Nameprot_E-fasciculatus_F_contig12870.2167.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length83
Homology
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: D8LBC7_ECTSI (tRNA Pseudouridine Synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBC7_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.590e-36
Identity = 69/82 (84.15%), Postives = 70/82 (85.37%), Query Frame = 0
Query:    1 GEGGVASSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 82
            GEG          VALLISYWGNNYQGLQIN+GARTIEAELELALYLAG ISKDNFGNPRKVSWSRAGRTDKGVHAAAQV S
Sbjct:  180 GEGXXXXXXXXXXVALLISYWGNNYQGLQINKGARTIEAELELALYLAGTISKDNFGNPRKVSWSRAGRTDKGVHAAAQVIS 261          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A1Y1HNE8_KLENI (Pseudouridylate synthase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HNE8_KLENI)

HSP 1 Score: 103 bits (257), Expect = 5.710e-24
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 0
Query:    7 SSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 82
            S   K+KVAL  +Y G  YQG+Q N GA+TIEAELELALY AGAI+KDNFG+P+KV W R+ RTDKGV A  QV S
Sbjct:   53 SKFKKRKVALFFAYIGAGYQGMQRNPGAKTIEAELELALYKAGAITKDNFGDPKKVHWMRSARTDKGVSAVGQVVS 128          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: K8YPP2_NANGC (Trna pseudouridine synthase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YPP2_NANGC)

HSP 1 Score: 100 bits (249), Expect = 2.250e-23
Identity = 46/71 (64.79%), Postives = 59/71 (83.10%), Query Frame = 0
Query:   10 SKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQV 80
            +KKKVA++I Y G ++QG+Q+N GA TIEAELE A+Y AG I + NFG+ +K+ WSR+GRTDKGVHAAAQV
Sbjct:   89 NKKKVAMIIGYCGTDFQGMQMNPGAITIEAELEKAMYEAGCIKEANFGSLQKIGWSRSGRTDKGVHAAAQV 159          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A176VP40_MARPO (PseudoU_synth_1 domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VP40_MARPO)

HSP 1 Score: 101 bits (251), Expect = 3.550e-23
Identity = 50/82 (60.98%), Postives = 58/82 (70.73%), Query Frame = 0
Query:    1 GEGGVASSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 82
            GE G      K+K+A++++Y G  YQG+Q N GA TIE ELE ALY AGAISK+NFG PRKV W RA RTDKGV A  QV S
Sbjct:  112 GEAGNTKRLKKRKIAMIVAYCGAAYQGMQRNPGAITIEGELEQALYRAGAISKENFGVPRKVDWMRAARTDKGVSAIGQVVS 193          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A4D9D7P8_9STRA (PseudoU_synth_1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7P8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 7.250e-23
Identity = 46/71 (64.79%), Postives = 59/71 (83.10%), Query Frame = 0
Query:   10 SKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQV 80
            +KKKVA++I Y G ++QG+Q+N GA TIEAELE A+Y AG I + NFG+ +K+ WSR+GRTDKGVHAAAQV
Sbjct:   96 NKKKVAMIIGYCGTDFQGMQMNPGAITIEAELEKAMYEAGCIKEANFGSLQKIGWSRSGRTDKGVHAAAQV 166          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A7S2INJ9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2INJ9_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 4.220e-22
Identity = 46/75 (61.33%), Postives = 55/75 (73.33%), Query Frame = 0
Query:    8 SSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 82
            S+ K+KVALL++Y G  Y GLQIN    TIE  LE A++ AG IS+ N G  +KVSWSRAGRTDKGVHAA Q+ S
Sbjct:   22 SNPKRKVALLLAYNGAGYSGLQINPDVETIEKTLEAAIFRAGGISEANHGVLQKVSWSRAGRTDKGVHAAGQIIS 96          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A7S1ET85_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ET85_9RHOD)

HSP 1 Score: 98.2 bits (243), Expect = 4.630e-22
Identity = 48/76 (63.16%), Postives = 55/76 (72.37%), Query Frame = 0
Query:    7 SSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 82
            S+  K+KVAL +SY G  Y G+Q N G RTIE ELE A+Y AG ISKDN+G  +KV WSRA RTDKGV AA QV S
Sbjct:   45 SALKKRKVALFVSYLGEGYSGMQKNPGVRTIEDELEYAVYQAGGISKDNYGQLQKVHWSRAARTDKGVSAAGQVVS 120          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A7S1TVP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVP3_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.170e-21
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = 0
Query:   11 KKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 82
            KK++AL+  Y G  + GLQIN G RT+EAELELA++ AGA+  +NFGN +K+SW+RA RTDKGVHAA  V S
Sbjct:  118 KKRLALIFGYNGKRFSGLQINPGQRTVEAELELAMFKAGAVRNENFGNLQKLSWTRACRTDKGVHAATNVAS 189          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A7S4KAH0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KAH0_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.390e-21
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 0
Query:    5 VASSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 82
              ++  K+KVALL+++ G +YQG+QIN  +R+I+AE+ELALY AG +++ NFG P K  WS + RTDKGVH+ AQV S
Sbjct:   84 AVATGPKRKVALLLAFLGTDYQGMQINASSRSIQAEVELALYRAGLLARSNFGYPHKYGWSNSARTDKGVHSCAQVCS 161          
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Match: A0A1E7FH56_9STRA (Pseudouridine synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH56_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.000e-21
Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 0
Query:   11 KKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGAISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS 82
            K+KVALL+ + G  Y G QIN   +TI+AE+ELALY +G ISKDNFG   K SWS + RTDKGVHA AQV S
Sbjct:   36 KRKVALLLGFLGTKYGGFQINPEQKTIQAEMELALYRSGMISKDNFGTQHKYSWSNSARTDKGVHACAQVCS 107          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12870.2167.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBC7_ECTSI1.590e-3684.15tRNA Pseudouridine Synthase n=2 Tax=Ectocarpus Tax... [more]
A0A1Y1HNE8_KLENI5.710e-2465.79Pseudouridylate synthase n=1 Tax=Klebsormidium nit... [more]
K8YPP2_NANGC2.250e-2364.79Trna pseudouridine synthase (Fragment) n=1 Tax=Nan... [more]
A0A176VP40_MARPO3.550e-2360.98PseudoU_synth_1 domain-containing protein n=2 Tax=... [more]
A0A4D9D7P8_9STRA7.250e-2364.79PseudoU_synth_1 domain-containing protein n=2 Tax=... [more]
A0A7S2INJ9_9EUKA4.220e-2261.33Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S1ET85_9RHOD4.630e-2263.16Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A7S1TVP3_9STRA1.170e-2161.11Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4KAH0_9STRA1.390e-2153.85Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A1E7FH56_9STRA2.000e-2162.50Pseudouridine synthase n=1 Tax=Fragilariopsis cyli... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.580coord: 2..82
e-value: 3.4E-27
score: 96.6
NoneNo IPR availablePANTHERPTHR11142:SF4TRNA PSEUDOURIDINE SYNTHASE Acoord: 10..82
IPR001406Pseudouridine synthase I, TruAPANTHERPTHR11142PSEUDOURIDYLATE SYNTHASEcoord: 10..82
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 11..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12870contigE-fasciculatus_F_contig12870:473..1054 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12870.2167.1mRNA_E-fasciculatus_F_contig12870.2167.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12870 473..1054 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12870.2167.1 ID=prot_E-fasciculatus_F_contig12870.2167.1|Name=mRNA_E-fasciculatus_F_contig12870.2167.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=83bp
GEGGVASSSSKKKVALLISYWGNNYQGLQINEGARTIEAELELALYLAGA
ISKDNFGNPRKVSWSRAGRTDKGVHAAAQVTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom_sf
IPR001406PsdUridine_synth_TruA