mRNA_E-fasciculatus_F_contig12854.2154.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12854.2154.1
Unique NamemRNA_E-fasciculatus_F_contig12854.2154.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12854.2154.1 vs. uniprot
Match: D8LFE0_ECTSI (DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFE0_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 2.170e-118
Identity = 177/179 (98.88%), Postives = 179/179 (100.00%), Query Frame = 1 
Query:    1 LLQKPLKERRRLLRSTFKEVDGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTANSSYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGEGKRTGKYGAYLLACYEPDREEYQSVCKIGTGFTDEILNSFWEELKEHTVEQRPRYYNVADSLSPDVWLAPHKV 537
            LLQKPLK+RRRLLRSTFKEVDGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTANSSYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFG+GKRTGKYGAYLLACYEPDREEYQSVCKIGTGFTDEILNSFWEELKEHTVEQRPRYYNVADSLSPDVWLAPHKV
Sbjct:  782 LLQKPLKQRRRLLRSTFKEVDGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTANSSYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGKGKRTGKYGAYLLACYEPDREEYQSVCKIGTGFTDEILNSFWEELKEHTVEQRPRYYNVADSLSPDVWLAPHKV 960
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BLAST of mRNA_E-fasciculatus_F_contig12854.2154.1 vs. uniprot
Match: A0A836CMS0_9STRA (DNA ligase (ATP) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMS0_9STRA)

HSP 1 Score: 248 bits (632), Expect = 8.860e-76
Identity = 119/179 (66.48%), Postives = 143/179 (79.89%), Query Frame = 1 
Query:    1 LLQKPLKERRRLLRSTFKEVDGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTANSSYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGEGKRTGKYGAYLLACYEPDREEYQSVCKIGTGFTDEILNSFWEELKEHTVEQRPRYYNVADSLSPDVWLAPHKV 537
            LLQ+PL+ RR  L + FKE  G F FA  +D++E+GDT PIE F++EAVKGNCEGLMVKTLT N++YEPS+RSLNWLKLKKDYL  DG  V DSLDLVPIGA++G GKR G +GAYLLACYEPD EEYQSVCKIGTGF++E L +    LK H +E++P Y+NV D++ PDVWL P KV
Sbjct:  389 LLQEPLQARREALHAAFKESPGHFGFAISLDYQENGDTEPIEAFMAEAVKGNCEGLMVKTLTHNATYEPSRRSLNWLKLKKDYLD-DGSSVADSLDLVPIGAYYGRGKRAGAFGAYLLACYEPDAEEYQSVCKIGTGFSNERLLALDAMLKAHVIERKPSYFNVGDTIEPDVWLEPCKV 566
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BLAST of mRNA_E-fasciculatus_F_contig12854.2154.1 vs. uniprot
Match: A0A7S4N564_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N564_9STRA)

HSP 1 Score: 236 bits (602), Expect = 1.920e-75
Identity = 111/174 (63.79%), Postives = 137/174 (78.74%), Query Frame = 1 
Query:    1 LLQKPLKERRRLLRSTFKEVDGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTANSSYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGEGKRTGKYGAYLLACYEPDREEYQSVCKIGTGFTDEILNSFWEELKEHTVEQRPRYYNVADSLSPDVWL 522
            LL K L ERR LLRS F+ VDG+F+FA  +DH EDGDT  +EEFL  AVKG CEGLMVKTL  N++YEPS+RSLNWLKLKKDYL+    G+GDS+DLVP+GA++G+GKRTG YGAYLL CY+PD EE+QSVCKIGTGF+DE L +  ++L  H +  +   YNV+++L PDVW 
Sbjct:   40 LLDKTLSERRELLRSNFQPVDGKFQFAKSLDHTEDGDTAILEEFLEAAVKGQCEGLMVKTLDTNAAYEPSRRSLNWLKLKKDYLE----GLGDSVDLVPLGAYWGKGKRTGVYGAYLLGCYDPDSEEFQSVCKIGTGFSDEALQTLSKDLNGHKIPTKTSQYNVSETLEPDVWF 209
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BLAST of mRNA_E-fasciculatus_F_contig12854.2154.1 vs. uniprot
Match: A0A7S2P3Z2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P3Z2_9STRA)

HSP 1 Score: 231 bits (589), Expect = 7.120e-73
Identity = 112/174 (64.37%), Postives = 134/174 (77.01%), Query Frame = 1 
Query:    1 LLQKPLKERRRLLRSTFKEVDGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTANSSYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGEGKRTGKYGAYLLACYEPDREEYQSVCKIGTGFTDEILNSFWEELKEHTVEQRPRYYNVADSLSPDVWL 522
            LL +PL ERR LL   F  VDG+F+FAT +DH E+GDT  IEEFL  AVKG CEGLMVKTL  N++YEPS+RSLNWLKLKKDYL+    G+GDS+DLVPIGA+ G+GKRTG YGAYLLACY+ D EE+QSVCKIGTGF+DE L      L + T+ ++   YNV+DSL+ DVW 
Sbjct:   75 LLDRPLAERRELLHKNFAPVDGKFQFATALDHTENGDTALIEEFLENAVKGQCEGLMVKTLDVNAAYEPSRRSLNWLKLKKDYLE----GLGDSVDLVPIGAYHGKGKRTGVYGAYLLACYDEDSEEFQSVCKIGTGFSDENLKELAASLNKSTIPEKSSQYNVSDSLACDVWF 244
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BLAST of mRNA_E-fasciculatus_F_contig12854.2154.1 vs. uniprot
Match: A0A7S3LA35_9STRA (DNA ligase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LA35_9STRA)

HSP 1 Score: 229 bits (585), Expect = 1.570e-70
Identity = 110/174 (63.22%), Postives = 134/174 (77.01%), Query Frame = 1 
Query:    1 LLQKPLKERRRLLRSTFKEVDGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTANSSYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGEGKRTGKYGAYLLACYEPDREEYQSVCKIGTGFTDEILNSFWEELKEHTVEQRPRYYNVADSLSPDVWL 522
            LL   L  RR LL+  F  V+G+F+FA  MDH+EDGDT  IEEFL +AVKG CEGLMVKTL  N++YEPSKRSLNWLKLKKDYL+    G+GDS+DLVP+GA+ G GKRTG YGAYLLACY+PD EE+QSVCKIGTGF+DE L +  ++L +H + ++   YNV+D L  DVW 
Sbjct:  221 LLNTTLAHRRELLKKHFVPVEGKFQFAVSMDHQEDGDTTVIEEFLDQAVKGQCEGLMVKTLEENANYEPSKRSLNWLKLKKDYLE----GLGDSVDLVPLGAYHGRGKRTGVYGAYLLACYDPDTEEFQSVCKIGTGFSDEDLKNLADKLNQHVIPKKSAQYNVSDQLECDVWF 390
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BLAST of mRNA_E-fasciculatus_F_contig12854.2154.1 vs. uniprot
Match: A0A7S2YG65_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YG65_9STRA)

HSP 1 Score: 221 bits (564), Expect = 4.470e-70
Identity = 104/169 (61.54%), Postives = 130/169 (76.92%), Query Frame = 1 
Query:   16 LKERRRLLRSTFKEVDGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTANSSYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGEGKRTGKYGAYLLACYEPDREEYQSVCKIGTGFTDEILNSFWEELKEHTVEQRPRYYNVADSLSPDVWL 522
            L ERR+L+   F+ ++G+F+FA F+DH EDGDT  +EEFL +AVKG CEGLMVKTL  N+ YEPS+RSLNWLKLKKDYL+    G+GDS+DLVP+GA+ G+GKRTG YGAYLLACY+ + EE+QSVCKIGTGF+DE L +  E L +H +  +   YNV D L  DVW 
Sbjct:    3 LAERRQLMLEHFQPIEGKFQFAQFLDHTEDGDTAVLEEFLDQAVKGQCEGLMVKTLEVNAIYEPSRRSLNWLKLKKDYLE----GLGDSVDLVPLGAYHGKGKRTGFYGAYLLACYDAESEEFQSVCKIGTGFSDEDLKTLAETLNKHVIPTKSSQYNVTDQLECDVWF 167
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BLAST of mRNA_E-fasciculatus_F_contig12854.2154.1 vs. uniprot
Match: A0A7S3Y279_HETAK (DNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y279_HETAK)

HSP 1 Score: 230 bits (586), Expect = 1.230e-68
Identity = 110/178 (61.80%), Postives = 135/178 (75.84%), Query Frame = 1 
Query:    4 LQKPLKERRRLLRSTFKEVDGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTANSSYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGEGKRTGKYGAYLLACYEPDREEYQSVCKIGTGFTDEILNSFWEELKEHTVEQRPRYYNVADSLSPDVWLAPHKV 537
            LQ+ L+ RR  LR  F+E +GRF FA  MDH EDGDT P+E+FL E+VK  CEGLMVKTL  NS+YEPS+RSLNWLKLKKDYL  D  GV DS+D+VPIGA+ G+GKRTG YGAYLLACY+P+ E++QS+CKIGTGF+DE L +  EE+KE  + + P  Y   +SL  DVW +  KV
Sbjct:  439 LQETLEARRAALRGCFEEAEGRFMFAVSMDHTEDGDTAPVEQFLEESVKAACEGLMVKTLVENSAYEPSRRSLNWLKLKKDYL--DNMGVADSVDVVPIGAYMGKGKRTGVYGAYLLACYDPETEDFQSLCKIGTGFSDEALRALTEEMKEFVIPKAPANYMYGESLEADVWFSASKV 614
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BLAST of mRNA_E-fasciculatus_F_contig12854.2154.1 vs. uniprot
Match: B8BW47_THAPS (DNA ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW47_THAPS)

HSP 1 Score: 224 bits (570), Expect = 9.010e-67
Identity = 109/174 (62.64%), Postives = 130/174 (74.71%), Query Frame = 1 
Query:    1 LLQKPLKERRRLLRSTFKEVDGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTANSSYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGEGKRTGKYGAYLLACYEPDREEYQSVCKIGTGFTDEILNSFWEELKEHTVEQRPRYYNVADSLSPDVWL 522
            LL +PL ERR L+R  F  V G+F+FAT +DH EDGDT  +EEFL  AVKG CEGLMVKTL  N++YEPS+RSLNWLKLKKDYL+    G+GDS+DLVP+GA+ G GKRTG YGAYLLA YE D EE+QSVCKIGTGF++E L      LK H + ++   Y V+DSL  DVW 
Sbjct:  383 LLDRPLAERRELMRKNFIPVPGKFQFATSLDHTEDGDTAVVEEFLDNAVKGQCEGLMVKTLDVNAAYEPSRRSLNWLKLKKDYLE----GLGDSVDLVPLGAYHGRGKRTGVYGAYLLAVYEEDTEEFQSVCKIGTGFSEEDLKELAASLKPHIIPEKSSQYVVSDSLECDVWF 552
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BLAST of mRNA_E-fasciculatus_F_contig12854.2154.1 vs. uniprot
Match: A0A196S7A1_BLAHN (DNA ligase 1 (Fragment) n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S7A1_BLAHN)

HSP 1 Score: 213 bits (542), Expect = 4.710e-66
Identity = 109/180 (60.56%), Postives = 136/180 (75.56%), Query Frame = 1 
Query:    1 LLQKPLKERRRLLRSTFKEVDGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTANSSYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGEGKRTGKYGAYLLACYEPDREEYQSVCKIGTGFTDEILNSFWEELK-EHTVEQRPRYYNVADSLSPDVWLAPHKV 537
            ++Q+PLKERR LLRST  EV GR +FAT    +E  DT  I+EFL E+V   CEGLMVKTLT N++YEPSKRSLNWLKLKKDYLQ     +GDSLDLVPIG ++G+GKRTG +GA+LLACY+ + EE+QSVCK+GTGF+DE L++       E+ VE++P  YNV  S+ PDVW  P +V
Sbjct:   67 VIQRPLKERRALLRSTIHEVPGRMQFAT---SRELADTEEIQEFLMESVNAGCEGLMVKTLTENATYEPSKRSLNWLKLKKDYLQD----LGDSLDLVPIGGYYGKGKRTGNFGAFLLACYDVNSEEFQSVCKLGTGFSDEALHAHSAFFSGENVVEKKPVDYNVVPSMEPDVWFKPVQV 239
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BLAST of mRNA_E-fasciculatus_F_contig12854.2154.1 vs. uniprot
Match: K0SNZ5_THAOC (DNA ligase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SNZ5_THAOC)

HSP 1 Score: 222 bits (565), Expect = 1.640e-65
Identity = 107/174 (61.49%), Postives = 131/174 (75.29%), Query Frame = 1 
Query:    1 LLQKPLKERRRLLRSTFKEVDGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTANSSYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGEGKRTGKYGAYLLACYEPDREEYQSVCKIGTGFTDEILNSFWEELKEHTVEQRPRYYNVADSLSPDVWL 522
            LL KPL  RR LL   F  V+G+F++AT +DH EDG+T  IEEFL  AVKG CEGLMVKTL  N+ YEP +RSLNWLKLKKDYL+    G+GDS+DLVP+GA+ G GKRTG YGAYLLACY+ D EE+QSVCKIGTGF++E L S   +LK H + ++   Y V+D+L+ DVW 
Sbjct:  400 LLDKPLSHRRELLHKNFLPVEGKFQYATALDHTEDGETAVIEEFLDAAVKGQCEGLMVKTLDVNAVYEPDRRSLNWLKLKKDYLE----GLGDSVDLVPLGAYHGRGKRTGVYGAYLLACYDYDTEEFQSVCKIGTGFSEEDLKSLAADLKGHVIPEKSSQYVVSDTLACDVWF 569
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12854.2154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFE0_ECTSI2.170e-11898.88DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A836CMS0_9STRA8.860e-7666.48DNA ligase (ATP) n=1 Tax=Tribonema minus TaxID=303... [more]
A0A7S4N564_9STRA1.920e-7563.79Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2P3Z2_9STRA7.120e-7364.37Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3LA35_9STRA1.570e-7063.22DNA ligase n=1 Tax=Amphora coffeiformis TaxID=2655... [more]
A0A7S2YG65_9STRA4.470e-7061.54Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3Y279_HETAK1.230e-6861.80DNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
B8BW47_THAPS9.010e-6762.64DNA ligase n=1 Tax=Thalassiosira pseudonana TaxID=... [more]
A0A196S7A1_BLAHN4.710e-6660.56DNA ligase 1 (Fragment) n=1 Tax=Blastocystis sp. s... [more]
K0SNZ5_THAOC1.640e-6561.49DNA ligase (Fragment) n=1 Tax=Thalassiosira oceani... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12854contigE-fasciculatus_F_contig12854:983..3619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score368.6
Seed ortholog evalue1.6e-99
Seed eggNOG ortholog2880.D8LFE0
Preferred nameLIG1
KEGG rclassRC00005
KEGG koko:K10747
KEGG ReactionR00381,R00382,R10822,R10823
KEGG Pathwayko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430
GOsGO:0000012,GO:0000228,GO:0000278,GO:0000302,GO:0000726,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006297,GO:0006298,GO:0006302,GO:0006303,GO:0006304,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009636,GO:0009653,GO:0009987,GO:0010035,GO:0016043,GO:0016070,GO:0016874,GO:0016886,GO:0022402,GO:0022616,GO:0031974,GO:0031981,GO:0032502,GO:0033260,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0035510,GO:0035753,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043570,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044728,GO:0044786,GO:0046483,GO:0046677,GO:0048856,GO:0050896,GO:0051103,GO:0051276,GO:0051716,GO:0070013,GO:0070988,GO:0071704,GO:0071840,GO:0080111,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1902969,GO:1903047,GO:1903461
EggNOG free text desc.DNA ligase (ATP) activity
EggNOG OGsCOG1793@1,KOG0967@2759
EC6.5.1.1,6.5.1.6,6.5.1.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons5
Model size537
Cds size537
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12854.2154.1prot_E-fasciculatus_F_contig12854.2154.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12854 983..3619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927789.345914-CDS-E-fasciculatus_F_contig12854:982..10811622927789.345914-CDS-E-fasciculatus_F_contig12854:982..1081Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12854 983..1081 +
1695995695.2876573-CDS-E-fasciculatus_F_contig12854:982..10811695995695.2876573-CDS-E-fasciculatus_F_contig12854:982..1081Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12854 983..1081 +
1622927789.3555725-CDS-E-fasciculatus_F_contig12854:1298..13851622927789.3555725-CDS-E-fasciculatus_F_contig12854:1298..1385Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12854 1299..1385 +
1695995695.2999716-CDS-E-fasciculatus_F_contig12854:1298..13851695995695.2999716-CDS-E-fasciculatus_F_contig12854:1298..1385Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12854 1299..1385 +
1622927789.3651025-CDS-E-fasciculatus_F_contig12854:1982..21271622927789.3651025-CDS-E-fasciculatus_F_contig12854:1982..2127Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12854 1983..2127 +
1695995695.3102036-CDS-E-fasciculatus_F_contig12854:1982..21271695995695.3102036-CDS-E-fasciculatus_F_contig12854:1982..2127Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12854 1983..2127 +
1622927789.3755822-CDS-E-fasciculatus_F_contig12854:2800..29481622927789.3755822-CDS-E-fasciculatus_F_contig12854:2800..2948Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12854 2801..2948 +
1695995695.3200803-CDS-E-fasciculatus_F_contig12854:2800..29481695995695.3200803-CDS-E-fasciculatus_F_contig12854:2800..2948Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12854 2801..2948 +
1622927789.3926466-CDS-E-fasciculatus_F_contig12854:3561..36191622927789.3926466-CDS-E-fasciculatus_F_contig12854:3561..3619Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12854 3562..3619 +
1695995695.330535-CDS-E-fasciculatus_F_contig12854:3561..36191695995695.330535-CDS-E-fasciculatus_F_contig12854:3561..3619Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12854 3562..3619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12854.2154.1

>prot_E-fasciculatus_F_contig12854.2154.1 ID=prot_E-fasciculatus_F_contig12854.2154.1|Name=mRNA_E-fasciculatus_F_contig12854.2154.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=179bp
LLQKPLKERRRLLRSTFKEVDGRFRFATFMDHKEDGDTGPIEEFLSEAVK
GNCEGLMVKTLTANSSYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPI
GAFFGEGKRTGKYGAYLLACYEPDREEYQSVCKIGTGFTDEILNSFWEEL
KEHTVEQRPRYYNVADSLSPDVWLAPHKV
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mRNA from alignment at E-fasciculatus_F_contig12854:983..3619+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12854.2154.1 ID=mRNA_E-fasciculatus_F_contig12854.2154.1|Name=mRNA_E-fasciculatus_F_contig12854.2154.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2637bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12854:983..3619+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCTGCAGAAGCCGTTGAAGGAAAGAAGGAGGCTCCTGCGCAGCACTTT
CAAGGAGGTGGACGGACGCTTTCGATTCGCCACCTTCATGGACCACAAGG
TCAGAAGGAGCAAGGATAGAGAGGGAGCGGGGGTGTTTGCTCAACACTCG
CTTCTTTGCGACCAACGTAGGCGTTCCTACCACTACCTGTAGCTTCACGG
CAGGTCATGCCACGGCTGTGACTTGGCAGGGATTGATGGTGTTGCTTGGG
AGTCATGCCGCTCTTGTTTTTAGCAGGCCGTCCCTCTGCCTGCGCGCTCT
TCTTTCCCCAAACCAGGAGGACGGTGACACTGGGCCCATCGAAGAGTTCT
TGTCAGAAGCGGTCAAGGGAAACTGCGAGGGGCTAATGGTCAAGACGCTT
ACGGTGAGATATGCACCCCTCTAGAATTTTACCTCGATGTTGAAGGCCTC
GCACCTTTTCATTCGGTGCTTTGTATCTACAGACCGTGTGCAGTGCACCC
GAGCCGTACAGGCTCCTGTGGCAAATGCAACGACCTGCTGACCTCGATTC
TCGATGTCTTTCGCCCTTTGACCACATCAATCAGTGTGAGCTCTCGATTC
CGCCGTCATTTTGGTGAGGGAGGTTGGTGGGCGGTTGCCCCCCCCCCCAA
CAGACAAGCACAGATCCACCGCTTCCAGCACCTCCGTTCGCAAACACTAG
CCACCGGATGCCGAACTCACTGCTTCCTCGTGGCTGTGCCGGCAAGGACC
TTTCGCGAACAACCTGGGTGGCCGTCCATCGAATGCCCCGACCGCGAGAC
GGACACAAAGGTCGTTTGCCCGTCCTACGATGCCGACCTTGTTCTTCAAC
TAGGCTCCAACAAAGCCCAACCCCTCCCGCGACGGCGCTTTGGCTGTGTA
GCATGTCCCATCTGCTGCTGGTGCTGGTGCTGGTGCTGCTACTGCTAAGT
ACGGGCCCCGACTCTTTCTTGTATTTTTTTTGTTTTTCCCCCTGTGTCAG
GCGAACTCTTCCTACGAGCCGTCCAAGAGGTCCCTCAACTGGCTCAAGCT
CAAGAAGGACTACCTCCAGGCCGACGGCGGGGGCGTCGGAGACTCGCTCG
ACCTCGTTCCCATCGGCGCCTTCTTCGGGGAGGGGAAGCGCACGGGTACG
CCTTTGATACTGATGAAATGCGATGCAGCGGCAGCAGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGTTGCTGTAATGTTCGGTAAAGTTGGAAGCACTT
CCTTGCCGTTGGGTGTCCGTTGTTTACGGGTGTTTCGGAGCTTCATTGGG
GGGATGGGAGGCGCATCCAATAGGTGATGACGTCAAGGTGGGGGCGGACC
GCGGCTCGTGGTCTTGAGCGCGCACCGCTGGCGAGGGTGCTGACGCAACC
CGCGACCCGCATCGCCGTCGCTTTGCAGGAGCCCGTAGAGTGACGACGTG
GGGCGCTAGCTTCATATCCGTGTATGGGTTGCGTGTCTTGCTGCCGTTGG
GCAGCTGGCAATATACGCGCGGTGAAAAACACCGACGGTTTTTTTCTCTT
CCCTTCTTTGAACTGCTCAGCAATGACATGGCAAAGCTTGCACCTGCTGT
TGGCGTGATGGCTCGCCGAGGCGGAACCCATGTGACGAAAATGCGCTGGA
GAATGCTTGGGTTTCCGTTCCAACCTGTGGCGGCCCACGTCCGAACCAGG
GTCCAGGAAAAAGCTGATCATGAATAGCCGCCCCTCAACCTCTCTGTTGA
CGCCTCTCTGAAAGGCCACTCTGAAATGACACTCGAACCTGCTCGTTTTG
TTGCGCCTGTTTCGTCAGGCAAGTACGGGGCGTACTTGTTGGCTTGCTAC
GAGCCCGACCGAGAGGAGTATCAATCGGTCTGCAAGATCGGCACCGGCTT
CACCGACGAGATTCTCAATTCCTTCTGGGAGGAGCTCAAGGAGCACACGG
TGGAGCAGCGTCCGAGGTGTGCCGCACGACTGACGAACACGACAACGTTA
TATTGTTGCGTCAGCAACGACTGCAGCAACCACACGGCGCTTATCATACG
TGTTTTTTTTTAATATGCCGGTGGGCCCAAACCCGGCGTGTTTTGCCGGC
TTGGCGAGGAGATATTCACTCGTTCTCAACTCGCTTTGTTCGTCGCTGAA
GCTCGAGCAAGACCTTCACGTTCATGTTGGGGAATTCGCCAGGGGTCATG
TATTTCGCCTGCTTGTTGCGGGCATGTACTTGTGATGTGTTAGTCGTTCG
GCAATAAATGCGTCTGGTTAACAATGTCAACCGCGGTGGTATCTGCCCGA
GTTTTTTTTGTGTTATCTTTGCAACGCGGAACTCTGATCGCCGCTCAGTG
TACTCCGCGGATGCTGACGCCCCAGGGCCGCACCTGCCAGAGACGAGCAA
TGCCGTGGTCGTGGTGTCATGTAACTTGGTTTTGACGTTCGGTGGTTATT
TTGTTTTGGCCATCACCGGTAGCGGTTTCATTCGCAGATGTGTTTCCCTC
ACATGGTTTCACGGTCCCGCTGTGTTCCGGGTTTGCGGTATTTTGTTTTT
CGTTTTTATCCGGCCCGCGTGGCACGCAGGTACTATAACGTTGCGGACAG
CCTCTCGCCGGACGTCTGGCTGGCACCTCATAAGGTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12854:983..3619+

>mRNA_E-fasciculatus_F_contig12854.2154.1 ID=mRNA_E-fasciculatus_F_contig12854.2154.1|Name=mRNA_E-fasciculatus_F_contig12854.2154.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1074bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12854:983..3619+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCTGCAGAAGCCGTTGAAGGAAAGAAGGAGGCTCCTGCGCAGCACTTT
CAAGGAGGTGGACGGACGCTTTCGATTCGCCACCTTCATGGACCACAAGC
TGCTGCAGAAGCCGTTGAAGGAAAGAAGGAGGCTCCTGCGCAGCACTTTC
AAGGAGGTGGACGGACGCTTTCGATTCGCCACCTTCATGGACCACAAGGA
GGACGGTGACACTGGGCCCATCGAAGAGTTCTTGTCAGAAGCGGTCAAGG
GAAACTGCGAGGGGCTAATGGTCAAGACGCTTACGGAGGACGGTGACACT
GGGCCCATCGAAGAGTTCTTGTCAGAAGCGGTCAAGGGAAACTGCGAGGG
GCTAATGGTCAAGACGCTTACGGCGAACTCTTCCTACGAGCCGTCCAAGA
GGTCCCTCAACTGGCTCAAGCTCAAGAAGGACTACCTCCAGGCCGACGGC
GGGGGCGTCGGAGACTCGCTCGACCTCGTTCCCATCGGCGCCTTCTTCGG
GGAGGGGAAGCGCACGGGCGAACTCTTCCTACGAGCCGTCCAAGAGGTCC
CTCAACTGGCTCAAGCTCAAGAAGGACTACCTCCAGGCCGACGGCGGGGG
CGTCGGAGACTCGCTCGACCTCGTTCCCATCGGCGCCTTCTTCGGGGAGG
GGAAGCGCACGGGCAAGTACGGGGCGTACTTGTTGGCTTGCTACGAGCCC
GACCGAGAGGAGTATCAATCGGTCTGCAAGATCGGCACCGGCTTCACCGA
CGAGATTCTCAATTCCTTCTGGGAGGAGCTCAAGGAGCACACGGTGGAGC
AGCGTCCGAGGCAAGTACGGGGCGTACTTGTTGGCTTGCTACGAGCCCGA
CCGAGAGGAGTATCAATCGGTCTGCAAGATCGGCACCGGCTTCACCGACG
AGATTCTCAATTCCTTCTGGGAGGAGCTCAAGGAGCACACGGTGGAGCAG
CGTCCGAGGTACTATAACGTTGCGGACAGCCTCTCGCCGGACGTCTGGCT
GGCACCTCATAAGGTAGTACTATAACGTTGCGGACAGCCTCTCGCCGGAC
GTCTGGCTGGCACCTCATAAGGTA
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