mRNA_E-fasciculatus_F_contig12854.2153.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12854.2153.1
Unique NamemRNA_E-fasciculatus_F_contig12854.2153.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12854.2153.1 vs. uniprot
Match: D8LFE0_ECTSI (DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFE0_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 7.050e-13
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 PCQMLSTRGRKDVDAEDVKVKVIVEAFDMLYLNGQ 105
            P QMLSTRGRKDVDAEDVKVKVIVEAFDMLYLNGQ
Sbjct:  746 PFQMLSTRGRKDVDAEDVKVKVIVEAFDMLYLNGQ 780
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BLAST of mRNA_E-fasciculatus_F_contig12854.2153.1 vs. uniprot
Match: UPI001C4BC19B (DNA ligase 1 isoform X1 n=2 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4BC19B)

HSP 1 Score: 56.6 bits (135), Expect = 3.980e-8
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 PCQMLSTRGRKDVDAEDVKVKVIVEAFDMLYLNGQ 105
            P Q+L+TR RKDVDAED++V+V V AFDMLYLNGQ
Sbjct:  631 PFQVLTTRKRKDVDAEDIRVQVCVYAFDMLYLNGQ 665
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BLAST of mRNA_E-fasciculatus_F_contig12854.2153.1 vs. uniprot
Match: A0A2R5G8P8_9STRA (DNA ligase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8P8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.390e-7
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 PCQMLSTRGRKDVDAEDVKVKVIVEAFDMLYLNGQ 105
            P Q+LSTR RKDV+ EDVKVKVIV AFD+L+LNG+
Sbjct:  992 PFQILSTRARKDVNIEDVKVKVIVCAFDLLFLNGE 1026
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BLAST of mRNA_E-fasciculatus_F_contig12854.2153.1 vs. uniprot
Match: H9GHC9_ANOCA (DNA ligase n=2 Tax=Anolis carolinensis TaxID=28377 RepID=H9GHC9_ANOCA)

HSP 1 Score: 55.1 bits (131), Expect = 1.390e-7
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 PCQMLSTRGRKDVDAEDVKVKVIVEAFDMLYLNGQ 105
            P Q+L+TR RKDVD ED++V+V V AFDMLYLNGQ
Sbjct:  630 PFQVLTTRKRKDVDTEDIRVQVCVYAFDMLYLNGQ 664
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BLAST of mRNA_E-fasciculatus_F_contig12854.2153.1 vs. uniprot
Match: A0A803T1K7_ANOCA (DNA ligase n=1 Tax=Anolis carolinensis TaxID=28377 RepID=A0A803T1K7_ANOCA)

HSP 1 Score: 55.1 bits (131), Expect = 1.390e-7
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 PCQMLSTRGRKDVDAEDVKVKVIVEAFDMLYLNGQ 105
            P Q+L+TR RKDVD ED++V+V V AFDMLYLNGQ
Sbjct:  372 PFQVLTTRKRKDVDTEDIRVQVCVYAFDMLYLNGQ 406
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BLAST of mRNA_E-fasciculatus_F_contig12854.2153.1 vs. uniprot
Match: A0A7S2W3T2_9STRA (DNA ligase (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W3T2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 6.670e-7
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 PCQMLSTRGRKDVDAEDVKVKVIVEAFDMLYLNGQ 105
            P Q+LSTR RKDV A DVKVKV+V AFD+LYLNG+
Sbjct:  458 PFQILSTRSRKDVAAGDVKVKVMVCAFDLLYLNGR 492
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BLAST of mRNA_E-fasciculatus_F_contig12854.2153.1 vs. uniprot
Match: UPI001E8CD376 (DNA ligase n=1 Tax=Emericellopsis atlantica TaxID=2614577 RepID=UPI001E8CD376)

HSP 1 Score: 53.1 bits (126), Expect = 6.670e-7
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 PCQMLSTRGRKDVDAEDVKVKVIVEAFDMLYLNGQ 105
            P Q L TR RKDV AEDVKVKV V AFD+LYLNG+
Sbjct:  573 PFQQLMTRKRKDVKAEDVKVKVCVFAFDLLYLNGE 607
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BLAST of mRNA_E-fasciculatus_F_contig12854.2153.1 vs. uniprot
Match: A0A6G1L4U2_9PEZI (DNA ligase n=1 Tax=Teratosphaeria nubilosa TaxID=161662 RepID=A0A6G1L4U2_9PEZI)

HSP 1 Score: 53.1 bits (126), Expect = 6.670e-7
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 PCQMLSTRGRKDVDAEDVKVKVIVEAFDMLYLNGQ 105
            P Q L TR RKDV AEDVKVKV V AFD+LYLNG+
Sbjct:  648 PFQQLMTRKRKDVKAEDVKVKVCVFAFDLLYLNGE 682
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BLAST of mRNA_E-fasciculatus_F_contig12854.2153.1 vs. uniprot
Match: F0U8I5_AJEC8 (DNA ligase n=1 Tax=Ajellomyces capsulatus (strain H88) TaxID=544711 RepID=F0U8I5_AJEC8)

HSP 1 Score: 53.1 bits (126), Expect = 6.670e-7
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 PCQMLSTRGRKDVDAEDVKVKVIVEAFDMLYLNGQVCGVYVS 126
            P Q L TR RKDV AEDVKVKV V AFD+L+LNG+V   Y++
Sbjct:  729 PFQQLMTRKRKDVKAEDVKVKVCVFAFDLLFLNGEVKKDYLA 770
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BLAST of mRNA_E-fasciculatus_F_contig12854.2153.1 vs. uniprot
Match: A0A5N6KRT3_9ROSI (DNA ligase n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6KRT3_9ROSI)

HSP 1 Score: 53.1 bits (126), Expect = 6.670e-7
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 PCQMLSTRGRKDVDAEDVKVKVIVEAFDMLYLNGQVC 111
            P Q L TR RKDV  EDVKVKV V AFD+L+LNGQ C
Sbjct:  657 PFQQLMTRKRKDVKVEDVKVKVCVFAFDILFLNGQPC 693
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12854.2153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFE0_ECTSI7.050e-1397.14DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
UPI001C4BC19B3.980e-874.29DNA ligase 1 isoform X1 n=2 Tax=Sceloporus undulat... [more]
A0A2R5G8P8_9STRA1.390e-774.29DNA ligase n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
H9GHC9_ANOCA1.390e-771.43DNA ligase n=2 Tax=Anolis carolinensis TaxID=28377... [more]
A0A803T1K7_ANOCA1.390e-771.43DNA ligase n=1 Tax=Anolis carolinensis TaxID=28377... [more]
A0A7S2W3T2_9STRA6.670e-774.29DNA ligase (Fragment) n=1 Tax=labyrinthulid quahog... [more]
UPI001E8CD3766.670e-774.29DNA ligase n=1 Tax=Emericellopsis atlantica TaxID=... [more]
A0A6G1L4U2_9PEZI6.670e-774.29DNA ligase n=1 Tax=Teratosphaeria nubilosa TaxID=1... [more]
F0U8I5_AJEC86.670e-764.29DNA ligase n=1 Tax=Ajellomyces capsulatus (strain ... [more]
A0A5N6KRT3_9ROSI6.670e-770.27DNA ligase n=1 Tax=Carpinus fangiana TaxID=176857 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12854contigE-fasciculatus_F_contig12854:4..138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue4.1e-09
Seed eggNOG ortholog2880.D8LFE0
Preferred nameLIG1
KEGG rclassRC00005
KEGG koko:K10747
KEGG ReactionR00381,R00382,R10822,R10823
KEGG Pathwayko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430
GOsGO:0000012,GO:0000228,GO:0000278,GO:0000302,GO:0000726,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006297,GO:0006298,GO:0006302,GO:0006303,GO:0006304,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009636,GO:0009653,GO:0009987,GO:0010035,GO:0016043,GO:0016070,GO:0016874,GO:0016886,GO:0022402,GO:0022616,GO:0031974,GO:0031981,GO:0032502,GO:0033260,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0035510,GO:0035753,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043570,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044728,GO:0044786,GO:0046483,GO:0046677,GO:0048856,GO:0050896,GO:0051103,GO:0051276,GO:0051716,GO:0070013,GO:0070988,GO:0071704,GO:0071840,GO:0080111,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1902969,GO:1903047,GO:1903461
EggNOG free text desc.DNA ligase (ATP) activity
EggNOG OGsCOG1793@1,KOG0967@2759
EC6.5.1.1,6.5.1.6,6.5.1.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size126
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927789.2988613-UTR-E-fasciculatus_F_contig12854:3..121622927789.2988613-UTR-E-fasciculatus_F_contig12854:3..12Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12854 4..12 +
1695995695.2647407-UTR-E-fasciculatus_F_contig12854:3..121695995695.2647407-UTR-E-fasciculatus_F_contig12854:3..12Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12854 4..12 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927789.3109396-CDS-E-fasciculatus_F_contig12854:12..1381622927789.3109396-CDS-E-fasciculatus_F_contig12854:12..138Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12854 13..138 +
1695995695.277242-CDS-E-fasciculatus_F_contig12854:12..1381695995695.277242-CDS-E-fasciculatus_F_contig12854:12..138Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12854 13..138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12854.2153.1prot_E-fasciculatus_F_contig12854.2153.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12854 13..138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12854.2153.1

>prot_E-fasciculatus_F_contig12854.2153.1 ID=prot_E-fasciculatus_F_contig12854.2153.1|Name=mRNA_E-fasciculatus_F_contig12854.2153.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=42bp
MLSTRGRKDVDAEDVKVKVIVEAFDMLYLNGQVCGVYVSLG*
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mRNA from alignment at E-fasciculatus_F_contig12854:4..138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12854.2153.1 ID=mRNA_E-fasciculatus_F_contig12854.2153.1|Name=mRNA_E-fasciculatus_F_contig12854.2153.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=135bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12854:4..138+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCTGCCAGATGCTGTCTACCCGCGGCCGGAAGGATGTGGACGCGGAGGA
CGTGAAGGTCAAGGTCATCGTGGAAGCGTTCGACATGCTCTACCTCAACG
GCCAGGTTTGTGGGGTGTATGTTTCTTTAGGTTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12854:4..138+

>mRNA_E-fasciculatus_F_contig12854.2153.1 ID=mRNA_E-fasciculatus_F_contig12854.2153.1|Name=mRNA_E-fasciculatus_F_contig12854.2153.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=252bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12854:4..138+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGTCTACCCGCGGCCGGAAGGATGTGGACGCGGAGGACGTGAAGGT
CAAGGTCATCGTGGAAGCGTTCGACATGCTCTACCTCAACGGCCAGGTTT
GTGGGGTGTATGTTTCTTTAGGTTAGATGCTGTCTACCCGCGGCCGGAAG
GATGTGGACGCGGAGGACGTGAAGGTCAAGGTCATCGTGGAAGCGTTCGA
CATGCTCTACCTCAACGGCCAGGTTTGTGGGGTGTATGTTTCTTTAGGTT
AG
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