mRNA_E-fasciculatus_F_contig12853.2152.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12853.2152.1
Unique NamemRNA_E-fasciculatus_F_contig12853.2152.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12853.2152.1 vs. uniprot
Match: A0A6H5JJY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY2_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 5.390e-14
Identity = 54/77 (70.13%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:  304 SLLPSVSDLFSSTAGPDFLNAPGAGQDFVVKAMKKXXXXXXXXXXXXXXXXXXXXXXXXX-----TAKRERDVAAGV 519
            SLLPSVSDLFSSTAGPDFLNAPGAGQDF+VKAMKK                 XXXXXXXX     TAKRERDVAAGV
Sbjct:  118 SLLPSVSDLFSSTAGPDFLNAPGAGQDFIVKAMKKEKKKQTAAEATTGDPTAXXXXXXXXXXXGATAKRERDVAAGV 194
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12853.2152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJY2_9PHAE5.390e-1470.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12853contigE-fasciculatus_F_contig12853:107..763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size521
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927789.25302-CDS-E-fasciculatus_F_contig12853:106..2491622927789.25302-CDS-E-fasciculatus_F_contig12853:106..249Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12853 107..249 +
1695995695.2474442-CDS-E-fasciculatus_F_contig12853:106..2491695995695.2474442-CDS-E-fasciculatus_F_contig12853:106..249Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12853 107..249 +
1622927789.2640274-CDS-E-fasciculatus_F_contig12853:385..7611622927789.2640274-CDS-E-fasciculatus_F_contig12853:385..761Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12853 386..761 +
1695995695.2549777-CDS-E-fasciculatus_F_contig12853:385..7611695995695.2549777-CDS-E-fasciculatus_F_contig12853:385..761Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12853 386..761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12853.2152.1prot_E-fasciculatus_F_contig12853.2152.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12853 107..761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12853.2152.1

>prot_E-fasciculatus_F_contig12853.2152.1 ID=prot_E-fasciculatus_F_contig12853.2152.1|Name=mRNA_E-fasciculatus_F_contig12853.2152.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=173bp
GDTAYQKASQLIGNQLQLALSVVYRTNVACGAGRGLWKRRLRRLRQQNSS
SSSGSSNDNDDSSSEDSSDAEDAAAGGGARKSGKANRRKPPPAGGSSGGG
GSLLPSVSDLFSSTAGPDFLNAPGAGQDFVVKAMKKEKKKQAAAEATTDD
PTANAAGAAAATAKRERDVAAGV
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mRNA from alignment at E-fasciculatus_F_contig12853:107..763+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12853.2152.1 ID=mRNA_E-fasciculatus_F_contig12853.2152.1|Name=mRNA_E-fasciculatus_F_contig12853.2152.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=657bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12853:107..763+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGATACAGCATATCAAAAGGCAAGCCAGCTAATTGGCAACCAGCTACA
GCTAGCGTTGTCTGTTGTCTACAGGACAAATGTCGCTTGCGGGGCTGGTC
GGGGGCTATGGAAGCGACGACTCAGACGACTCCGGCAACAAAAGCTCATC
GCCGGCCAAGGGGGACAAGGCCGACGACAAGGACGGGGGCAGGGGGGCGG
GGGGCAGCGGGAGGGAAGAAAAGAGCGCCGGTGCTACCTCCGGCGGCTCG
CGCAACGAAGAGGGTTCCGGCAACAGAAGCAGCAGCAGCAGCAGCGGCAG
CAGCAACGACAACGACGACAGCAGCAGCGAGGATAGCAGCGATGCGGAGG
ATGCAGCAGCAGGAGGAGGAGCGCGAAAAAGCGGCAAGGCGAACAGACGA
AAGCCTCCGCCGGCTGGTGGCAGCAGCGGCGGCGGCGGTAGTCTGCTCCC
GTCCGTGAGCGACCTCTTCAGCAGCACGGCGGGGCCGGACTTTCTCAACG
CACCGGGAGCCGGCCAGGATTTCGTCGTCAAGGCCATGAAAAAGGAAAAG
AAGAAGCAAGCGGCAGCAGAGGCGACAACAGACGACCCCACCGCAAATGC
GGCGGGGGCAGCGGCAGCAACAGCGAAGCGCGAGCGGGACGTAGCAGCGG
GGGTGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12853:107..763+

>mRNA_E-fasciculatus_F_contig12853.2152.1 ID=mRNA_E-fasciculatus_F_contig12853.2152.1|Name=mRNA_E-fasciculatus_F_contig12853.2152.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1038bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12853:107..763+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGATACAGCATATCAAAAGGCAAGCCAGCTAATTGGCAACCAGCTACA
GCTAGCGTTGTCTGTTGTCTACAGGACAAATGTCGCTTGCGGGGCTGGTC
GGGGGCTATGGAAGCGACGACTCAGACGACTCCGGCAACAAAAGGCGATA
CAGCATATCAAAAGGCAAGCCAGCTAATTGGCAACCAGCTACAGCTAGCG
TTGTCTGTTGTCTACAGGACAAATGTCGCTTGCGGGGCTGGTCGGGGGCT
ATGGAAGCGACGACTCAGACGACTCCGGCAACAAAACAGCAGCAGCAGCA
GCGGCAGCAGCAACGACAACGACGACAGCAGCAGCGAGGATAGCAGCGAT
GCGGAGGATGCAGCAGCAGGAGGAGGAGCGCGAAAAAGCGGCAAGGCGAA
CAGACGAAAGCCTCCGCCGGCTGGTGGCAGCAGCGGCGGCGGCGGTAGTC
TGCTCCCGTCCGTGAGCGACCTCTTCAGCAGCACGGCGGGGCCGGACTTT
CTCAACGCACCGGGAGCCGGCCAGGATTTCGTCGTCAAGGCCATGAAAAA
GGAAAAGAAGAAGCAAGCGGCAGCAGAGGCGACAACAGACGACCCCACCG
CAAATGCGGCGGGGGCAGCGGCAGCAACAGCGAAGCGCGAGCGGGACGTA
GCAGCGGGGGTGCAGCAGCAGCAGCAGCGGCAGCAGCAACGACAACGACG
ACAGCAGCAGCGAGGATAGCAGCGATGCGGAGGATGCAGCAGCAGGAGGA
GGAGCGCGAAAAAGCGGCAAGGCGAACAGACGAAAGCCTCCGCCGGCTGG
TGGCAGCAGCGGCGGCGGCGGTAGTCTGCTCCCGTCCGTGAGCGACCTCT
TCAGCAGCACGGCGGGGCCGGACTTTCTCAACGCACCGGGAGCCGGCCAG
GATTTCGTCGTCAAGGCCATGAAAAAGGAAAAGAAGAAGCAAGCGGCAGC
AGAGGCGACAACAGACGACCCCACCGCAAATGCGGCGGGGGCAGCGGCAG
CAACAGCGAAGCGCGAGCGGGACGTAGCAGCGGGGGTG
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