prot_E-fasciculatus_F_contig12729.2078.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12729.2078.1
Unique Nameprot_E-fasciculatus_F_contig12729.2078.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length48
Homology
BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 6.940e-17
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 0
Query:    1 KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQ 41
            KFCYVNSKSARKKLVAALFNVPRQA DLLPMYARLVAILDQ
Sbjct:  893 KFCYVNSKSARKKLVAALFNVPRQARDLLPMYARLVAILDQ 933          
BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.510e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0
Query:    1 KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQVCGE 45
            KFC+ NSKSAR+KLV ALF  PRQ+LDLLP YARLVA LDQV  +
Sbjct:  469 KFCHHNSKSARRKLVRALFEAPRQSLDLLPQYARLVATLDQVLRD 513          
BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A168QM14_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168QM14_ABSGL)

HSP 1 Score: 68.6 bits (166), Expect = 2.820e-12
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 0
Query:    1 KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQVCGEAG 47
            +FCY+NSK ARK+L+ AL N+PRQ +DLLP YARL+AIL+Q   + G
Sbjct:  452 EFCYMNSKGARKRLIKALLNIPRQRVDLLPYYARLIAILNQYYADIG 498          
BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A1X2G7E1_9FUNG (ARM repeat-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G7E1_9FUNG)

HSP 1 Score: 68.6 bits (166), Expect = 2.820e-12
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0
Query:    1 KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQVCGEAG 47
            +FCYVNSK+ARK+LV ALF VPRQ +DLLP Y RL+AIL+Q   + G
Sbjct:  514 EFCYVNSKNARKRLVKALFGVPRQRVDLLPYYGRLIAILNQYFPDIG 560          
BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A1X2IJB4_9FUNG (Armadillo-type protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IJB4_9FUNG)

HSP 1 Score: 66.2 bits (160), Expect = 1.840e-11
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 0
Query:    1 KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQVCGEAG 47
            +FCY+NSK ARK+L+  L N+PRQ +DLLP YARL+AIL+Q   + G
Sbjct:  557 EFCYMNSKGARKRLIKTLLNIPRQRVDLLPYYARLIAILNQYYTDIG 603          
BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A8H7EU12_9FUNG (Uncharacterized protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EU12_9FUNG)

HSP 1 Score: 66.2 bits (160), Expect = 1.840e-11
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 0
Query:    1 KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQVCGEAG 47
            +FCYVNSK+ARK+LV  L NVPRQ LDLLP YARL+ IL+    + G
Sbjct:  550 EFCYVNSKAARKRLVKTLLNVPRQRLDLLPYYARLITILNNYFPDIG 596          
BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A8H7S8T3_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S8T3_9FUNG)

HSP 1 Score: 65.5 bits (158), Expect = 3.430e-11
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 0
Query:    1 KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQ 41
            +FCY+NSK+ARK+LV AL NVPRQ +DLLP Y+RL+AIL Q
Sbjct:  538 EFCYMNSKNARKRLVKALLNVPRQRVDLLPYYSRLIAILSQ 578          
BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A1X2H9L6_SYNRA (Armadillo-type protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H9L6_SYNRA)

HSP 1 Score: 64.3 bits (155), Expect = 8.760e-11
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query:    2 FCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQ 41
            FCY+NSK+ RK+LV AL NVPRQ +DLLP Y+RL+AIL Q
Sbjct:  538 FCYINSKATRKRLVKALLNVPRQRVDLLPYYSRLIAILSQ 577          
BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A388KY68_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KY68_CHABU)

HSP 1 Score: 64.3 bits (155), Expect = 8.760e-11
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 0
Query:    2 FCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQVCGEAG 47
            FCY+NSKS RKKLV ALF+VPR AL+LLP Y+RLVA L Q   +  
Sbjct:  609 FCYINSKSNRKKLVRALFSVPRTALELLPYYSRLVATLSQCMRDVA 654          
BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A162X8L0_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162X8L0_PHYB8)

HSP 1 Score: 63.9 bits (154), Expect = 1.200e-10
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 0
Query:    1 KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQVCGEAG 47
            +FCYVNSK+ARK+LV  L  VPRQ +DLLP YARL+A+L+    + G
Sbjct:  496 EFCYVNSKTARKRLVKTLLGVPRQRVDLLPYYARLIAVLNNYYPDIG 542          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEF3_ECTSI6.940e-1797.56Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A835YRH9_9STRA1.510e-1273.33Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A168QM14_ABSGL2.820e-1261.70Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
A0A1X2G7E1_9FUNG2.820e-1265.96ARM repeat-containing protein n=1 Tax=Hesseltinell... [more]
A0A1X2IJB4_9FUNG1.840e-1159.57Armadillo-type protein n=1 Tax=Absidia repens TaxI... [more]
A0A8H7EU12_9FUNG1.840e-1163.83Uncharacterized protein n=1 Tax=Apophysomyces ossi... [more]
A0A8H7S8T3_9FUNG3.430e-1170.73Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
A0A1X2H9L6_SYNRA8.760e-1170.00Armadillo-type protein n=1 Tax=Syncephalastrum rac... [more]
A0A388KY68_CHABU8.760e-1165.22Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A162X8L0_PHYB81.200e-1059.57Uncharacterized protein n=1 Tax=Phycomyces blakesl... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039762Nonsense-mediated mRNA decay protein Nmd2/UPF2PANTHERPTHR12839NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2coord: 1..43
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 5..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12729contigE-fasciculatus_F_contig12729:713..856 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12729.2078.1mRNA_E-fasciculatus_F_contig12729.2078.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12729 713..856 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12729.2078.1 ID=prot_E-fasciculatus_F_contig12729.2078.1|Name=mRNA_E-fasciculatus_F_contig12729.2078.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=48bp
KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQVCGEAG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR039762Nmd2/UPF2