mRNA_E-fasciculatus_F_contig12729.2078.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12729.2078.1
Unique NamemRNA_E-fasciculatus_F_contig12729.2078.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 6.940e-17
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQ 123
            KFCYVNSKSARKKLVAALFNVPRQA DLLPMYARLVAILDQ
Sbjct:  893 KFCYVNSKSARKKLVAALFNVPRQARDLLPMYARLVAILDQ 933
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BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.510e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQVCGE 135
            KFC+ NSKSAR+KLV ALF  PRQ+LDLLP YARLVA LDQV  +
Sbjct:  469 KFCHHNSKSARRKLVRALFEAPRQSLDLLPQYARLVATLDQVLRD 513
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BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A168QM14_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168QM14_ABSGL)

HSP 1 Score: 68.6 bits (166), Expect = 2.820e-12
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQVCGEAG 141
            +FCY+NSK ARK+L+ AL N+PRQ +DLLP YARL+AIL+Q   + G
Sbjct:  452 EFCYMNSKGARKRLIKALLNIPRQRVDLLPYYARLIAILNQYYADIG 498
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BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A1X2G7E1_9FUNG (ARM repeat-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G7E1_9FUNG)

HSP 1 Score: 68.6 bits (166), Expect = 2.820e-12
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQVCGEAG 141
            +FCYVNSK+ARK+LV ALF VPRQ +DLLP Y RL+AIL+Q   + G
Sbjct:  514 EFCYVNSKNARKRLVKALFGVPRQRVDLLPYYGRLIAILNQYFPDIG 560
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BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A1X2IJB4_9FUNG (Armadillo-type protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IJB4_9FUNG)

HSP 1 Score: 66.2 bits (160), Expect = 1.840e-11
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQVCGEAG 141
            +FCY+NSK ARK+L+  L N+PRQ +DLLP YARL+AIL+Q   + G
Sbjct:  557 EFCYMNSKGARKRLIKTLLNIPRQRVDLLPYYARLIAILNQYYTDIG 603
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BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A8H7EU12_9FUNG (Uncharacterized protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EU12_9FUNG)

HSP 1 Score: 66.2 bits (160), Expect = 1.840e-11
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQVCGEAG 141
            +FCYVNSK+ARK+LV  L NVPRQ LDLLP YARL+ IL+    + G
Sbjct:  550 EFCYVNSKAARKRLVKTLLNVPRQRLDLLPYYARLITILNNYFPDIG 596
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BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A8H7S8T3_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S8T3_9FUNG)

HSP 1 Score: 65.5 bits (158), Expect = 3.430e-11
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQ 123
            +FCY+NSK+ARK+LV AL NVPRQ +DLLP Y+RL+AIL Q
Sbjct:  538 EFCYMNSKNARKRLVKALLNVPRQRVDLLPYYSRLIAILSQ 578
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BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A1X2H9L6_SYNRA (Armadillo-type protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H9L6_SYNRA)

HSP 1 Score: 64.3 bits (155), Expect = 8.760e-11
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    4 FCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQ 123
            FCY+NSK+ RK+LV AL NVPRQ +DLLP Y+RL+AIL Q
Sbjct:  538 FCYINSKATRKRLVKALLNVPRQRVDLLPYYSRLIAILSQ 577
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BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A388KY68_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KY68_CHABU)

HSP 1 Score: 64.3 bits (155), Expect = 8.760e-11
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    4 FCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQVCGEAG 141
            FCY+NSKS RKKLV ALF+VPR AL+LLP Y+RLVA L Q   +  
Sbjct:  609 FCYINSKSNRKKLVRALFSVPRTALELLPYYSRLVATLSQCMRDVA 654
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BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Match: A0A162X8L0_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162X8L0_PHYB8)

HSP 1 Score: 63.9 bits (154), Expect = 1.200e-10
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQVCGEAG 141
            +FCYVNSK+ARK+LV  L  VPRQ +DLLP YARL+A+L+    + G
Sbjct:  496 EFCYVNSKTARKRLVKTLLGVPRQRVDLLPYYARLIAVLNNYYPDIG 542
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12729.2078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEF3_ECTSI6.940e-1797.56Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A835YRH9_9STRA1.510e-1273.33Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A168QM14_ABSGL2.820e-1261.70Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
A0A1X2G7E1_9FUNG2.820e-1265.96ARM repeat-containing protein n=1 Tax=Hesseltinell... [more]
A0A1X2IJB4_9FUNG1.840e-1159.57Armadillo-type protein n=1 Tax=Absidia repens TaxI... [more]
A0A8H7EU12_9FUNG1.840e-1163.83Uncharacterized protein n=1 Tax=Apophysomyces ossi... [more]
A0A8H7S8T3_9FUNG3.430e-1170.73Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
A0A1X2H9L6_SYNRA8.760e-1170.00Armadillo-type protein n=1 Tax=Syncephalastrum rac... [more]
A0A388KY68_CHABU8.760e-1165.22Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A162X8L0_PHYB81.200e-1059.57Uncharacterized protein n=1 Tax=Phycomyces blakesl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12729contigE-fasciculatus_F_contig12729:713..856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog2880.D8LEF3
Preferred nameUPF2
KEGG koko:K14327
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005844,GO:0006139,GO:0006259,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007274,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009648,GO:0009719,GO:0009725,GO:0009751,GO:0009753,GO:0009755,GO:0009863,GO:0009867,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019899,GO:0023052,GO:0031503,GO:0031974,GO:0031981,GO:0032870,GO:0032991,GO:0033036,GO:0034427,GO:0034613,GO:0034641,GO:0034655,GO:0035145,GO:0035690,GO:0035770,GO:0036464,GO:0042162,GO:0042221,GO:0042493,GO:0042742,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048519,GO:0048571,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070727,GO:0070887,GO:0071166,GO:0071229,GO:0071236,GO:0071310,GO:0071395,GO:0071407,GO:0071426,GO:0071427,GO:0071446,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090304,GO:0097159,GO:0098542,GO:0098916,GO:0099536,GO:0099537,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1901701,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsKOG2051@1,KOG2051@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927780.4343245-CDS-E-fasciculatus_F_contig12729:712..8561622927780.4343245-CDS-E-fasciculatus_F_contig12729:712..856Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12729 713..856 -
1695995690.9256392-CDS-E-fasciculatus_F_contig12729:712..8561695995690.9256392-CDS-E-fasciculatus_F_contig12729:712..856Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12729 713..856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12729.2078.1prot_E-fasciculatus_F_contig12729.2078.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12729 713..856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12729.2078.1

>prot_E-fasciculatus_F_contig12729.2078.1 ID=prot_E-fasciculatus_F_contig12729.2078.1|Name=mRNA_E-fasciculatus_F_contig12729.2078.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=48bp
KFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQVCGEAG*
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mRNA from alignment at E-fasciculatus_F_contig12729:713..856-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12729.2078.1 ID=mRNA_E-fasciculatus_F_contig12729.2078.1|Name=mRNA_E-fasciculatus_F_contig12729.2078.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=144bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12729:713..856- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGTTCTGCTACGTGAACAGCAAGTCGGCGAGAAAGAAGCTAGTGGCGGC
GCTGTTCAACGTGCCAAGACAGGCGCTAGACCTGCTGCCCATGTACGCTA
GGCTGGTAGCCATCCTCGACCAGGTGTGTGGAGAAGCGGGATAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12729:713..856-

>mRNA_E-fasciculatus_F_contig12729.2078.1 ID=mRNA_E-fasciculatus_F_contig12729.2078.1|Name=mRNA_E-fasciculatus_F_contig12729.2078.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=288bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12729:713..856- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGTTCTGCTACGTGAACAGCAAGTCGGCGAGAAAGAAGCTAGTGGCGGC
GCTGTTCAACGTGCCAAGACAGGCGCTAGACCTGCTGCCCATGTACGCTA
GGCTGGTAGCCATCCTCGACCAGGTGTGTGGAGAAGCGGGATAAAAGTTC
TGCTACGTGAACAGCAAGTCGGCGAGAAAGAAGCTAGTGGCGGCGCTGTT
CAACGTGCCAAGACAGGCGCTAGACCTGCTGCCCATGTACGCTAGGCTGG
TAGCCATCCTCGACCAGGTGTGTGGAGAAGCGGGATAA
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