|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig10215.207.1 vs. uniprot
Match: D7FPT1_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT1_ECTSI) HSP 1 Score: 114 bits (284), Expect = 7.710e-26 Identity = 68/90 (75.56%), Postives = 73/90 (81.11%), Query Frame = 2 Query: 311 IEDAASAEDCPPG-LGVARESSGEQADRPLLDREATFLTAVTVPGENLRIMDGEAATTAGGVAKATVQAERGGYAPRLTDSRSLMAEIMT 577
+EDA +AEDCPP LGVA+ESSGE+ADRPLLDREATFLT I DGEAAT G VAKATV+AERGGYAPRLTDSRSLMAEIMT
Sbjct: 1 MEDAGAAEDCPPPWLGVAKESSGERADRPLLDREATFLT---------EIADGEAATKVG-VAKATVKAERGGYAPRLTDSRSLMAEIMT 80
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 114.8 |
| Seed ortholog evalue | 2.9e-23 |
| Seed eggNOG ortholog | 2880.D7FPT1 |
| Preferred name | WDR49 |
| KEGG ko | ko:K12811 |
| KEGG Pathway | ko03040,map03040 |
| EggNOG free text desc. | microtubule severing |
| EggNOG OGs | KOG0267@1,KOG0267@2759 |
| EC | 3.6.4.13 |
| COG Functional cat. | E |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03041 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 579 |
| Cds size | 369 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10215.207.1 >prot_E-fasciculatus_F_contig10215.207.1 ID=prot_E-fasciculatus_F_contig10215.207.1|Name=mRNA_E-fasciculatus_F_contig10215.207.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=123bp
MMSSAAVTPRGTSDSKLPATMVESAKGVVGPAVGIEDAASAEDCPPGLGV
ARESSGEQADRPLLDREATFLTAVTVPGENLRIMDGEAATTAGGVAKATV
QAERGGYAPRLTDSRSLMAEIMT back to topmRNA from alignment at E-fasciculatus_F_contig10215:403..1456+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10215.207.1 ID=mRNA_E-fasciculatus_F_contig10215.207.1|Name=mRNA_E-fasciculatus_F_contig10215.207.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1054bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10215:403..1456+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACACGACATCAGACCCCGATATCCACCATACGCTGCCTGCGCCCGCCGT
GTTGAATACTACTGTACGCTGATGGCCTGTCAGAGCCACCACTTAAACTC
GACGTTTGGCACTGCTGTGTTCCTGGTGTAACACGTTCGTGCACACTTAG
TTGGCGATTCCTTCAAACCTTCCTAACGCCGCGTACGCGTTCAAAAAGTA
GCAAGCATATGATGAGCTCTGCTGCTGTCACTCCCCGAGGAACGTCTGAC
AGCAAACTCCCAGCTACGATGGTAGAATCAGCGAAAGGCGTGGTCGGTCC
AGCAGTAGGAATTGAGGATGCAGCATCAGCGGAGGACTGCCCACCTGGGT
TAGGGGTGGCCAGAGAATCGAGCGGCGAACAAGCCGACAGGCCATTGCTG
GACCGGGAGGCGACGTTCCTGACTGCGGTGACGGTACCTGGAGAGTGAGT
TGCTGTTGTGTGCCCCGGTGCAAAAGAATGGAAAGTAACAGTAAGAGACG
AAAAAAGGAGCCGGTGTGTGCTACAGAGTAGCCTGCATGTTACCATGAAT
TTGAAGCAGACACACTGTATTGGTTTCAGGTGCTCAGAAGATAGACTAGG
TAAACCAGGCTCGTGTGAGCCACAAAAGGTATTTAAGGTCGGATTTCCAC
CGGGCATCCTTGATGCCAGACCAACGTACATTGCGCAACGTCGAGTTTCC
AGAAATACACAAGTATGTTGACGCAGATAATATGCACAGGAAAAACTTGA
GAAATGGACAATGTATGCTTCAAGAAGAAAAAGAATGTACGCTTGTGTGG
AGAGCGAGTAGATCCCACCTTTTCACGTTTTGTCATGACTGAGTGCCTTG
GGCAATCGTCTGCGCATGCAAAAGCACGAACGATAAGTCATGATGTGACA
TTCAACACATGGATTCGATAGGAATTTAAGGATCATGGACGGGGAGGCGG
CTACAACAGCAGGGGGTGTGGCGAAGGCTACGGTACAAGCGGAGCGGGGC
GGCTATGCCCCGCGGTTGACGGACTCGCGAAGCCTGATGGCCGAGATAAT
GACG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10215:403..1456+ >mRNA_E-fasciculatus_F_contig10215.207.1 ID=mRNA_E-fasciculatus_F_contig10215.207.1|Name=mRNA_E-fasciculatus_F_contig10215.207.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10215:403..1456+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGAGCTCTGCTGCTGTCACTCCCCGAGGAACGTCTGACAGCAAACT
CCCAGCTACGATGGTAGAATCAGCGAAAGGCGTGGTCGGTCCAGCAGTAG
GAATTGAGGATGCAGCATCAGCGGAGGACTGCCCACCTGGGTTAGGGGTG
GCCAGAGAATCGAGCGGCGAACAAGCCGACAGGCCATTGCTGGACCGGGA
GGCGACGTTCCTGACTGCGGTGACGGTACCTGGAGAATGATGAGCTCTGC
TGCTGTCACTCCCCGAGGAACGTCTGACAGCAAACTCCCAGCTACGATGG
TAGAATCAGCGAAAGGCGTGGTCGGTCCAGCAGTAGGAATTGAGGATGCA
GCATCAGCGGAGGACTGCCCACCTGGGTTAGGGGTGGCCAGAGAATCGAG
CGGCGAACAAGCCGACAGGCCATTGCTGGACCGGGAGGCGACGTTCCTGA
CTGCGGTGACGGTACCTGGAGAGAATTTAAGGATCATGGACGGGGAGGCG
GCTACAACAGCAGGGGGTGTGGCGAAGGCTACGGTACAAGCGGAGCGGGG
CGGCTATGCCCCGCGGTTGACGGACTCGCGAAGCCTGATGGCCGAGATAA
TGACGGAATTTAAGGATCATGGACGGGGAGGCGGCTACAACAGCAGGGGG
TGTGGCGAAGGCTACGGTACAAGCGGAGCGGGGCGGCTATGCCCCGCGGT
TGACGGACTCGCGAAGCCTGATGGCCGAGATAATGACG back to top
|