mRNA_E-fasciculatus_F_contig10215.207.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10215.207.1
Unique NamemRNA_E-fasciculatus_F_contig10215.207.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10215.207.1 vs. uniprot
Match: D7FPT1_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT1_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 7.710e-26
Identity = 68/90 (75.56%), Postives = 73/90 (81.11%), Query Frame = 2 
Query:  311 IEDAASAEDCPPG-LGVARESSGEQADRPLLDREATFLTAVTVPGENLRIMDGEAATTAGGVAKATVQAERGGYAPRLTDSRSLMAEIMT 577
            +EDA +AEDCPP  LGVA+ESSGE+ADRPLLDREATFLT          I DGEAAT  G VAKATV+AERGGYAPRLTDSRSLMAEIMT
Sbjct:    1 MEDAGAAEDCPPPWLGVAKESSGERADRPLLDREATFLT---------EIADGEAATKVG-VAKATVKAERGGYAPRLTDSRSLMAEIMT 80
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10215.207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPT1_ECTSI7.710e-2675.56EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10215contigE-fasciculatus_F_contig10215:403..1456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue2.9e-23
Seed eggNOG ortholog2880.D7FPT1
Preferred nameWDR49
KEGG koko:K12811
KEGG Pathwayko03040,map03040
EggNOG free text desc.microtubule severing
EggNOG OGsKOG0267@1,KOG0267@2759
EC3.6.4.13
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size579
Cds size369
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10215.207.1prot_E-fasciculatus_F_contig10215.207.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10215 611..1456 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.7729778-UTR-E-fasciculatus_F_contig10215:402..6101622927524.7729778-UTR-E-fasciculatus_F_contig10215:402..610Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10215 403..610 +
1695995577.9618168-UTR-E-fasciculatus_F_contig10215:402..6101695995577.9618168-UTR-E-fasciculatus_F_contig10215:402..610Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10215 403..610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.7878532-CDS-E-fasciculatus_F_contig10215:610..8461622927524.7878532-CDS-E-fasciculatus_F_contig10215:610..846Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10215 611..846 +
1695995577.9723265-CDS-E-fasciculatus_F_contig10215:610..8461695995577.9723265-CDS-E-fasciculatus_F_contig10215:610..846Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10215 611..846 +
1622927524.8037522-CDS-E-fasciculatus_F_contig10215:1323..14561622927524.8037522-CDS-E-fasciculatus_F_contig10215:1323..1456Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10215 1324..1456 +
1695995577.9808395-CDS-E-fasciculatus_F_contig10215:1323..14561695995577.9808395-CDS-E-fasciculatus_F_contig10215:1323..1456Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10215 1324..1456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10215.207.1

>prot_E-fasciculatus_F_contig10215.207.1 ID=prot_E-fasciculatus_F_contig10215.207.1|Name=mRNA_E-fasciculatus_F_contig10215.207.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=123bp
MMSSAAVTPRGTSDSKLPATMVESAKGVVGPAVGIEDAASAEDCPPGLGV
ARESSGEQADRPLLDREATFLTAVTVPGENLRIMDGEAATTAGGVAKATV
QAERGGYAPRLTDSRSLMAEIMT
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mRNA from alignment at E-fasciculatus_F_contig10215:403..1456+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10215.207.1 ID=mRNA_E-fasciculatus_F_contig10215.207.1|Name=mRNA_E-fasciculatus_F_contig10215.207.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1054bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10215:403..1456+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACACGACATCAGACCCCGATATCCACCATACGCTGCCTGCGCCCGCCGT
GTTGAATACTACTGTACGCTGATGGCCTGTCAGAGCCACCACTTAAACTC
GACGTTTGGCACTGCTGTGTTCCTGGTGTAACACGTTCGTGCACACTTAG
TTGGCGATTCCTTCAAACCTTCCTAACGCCGCGTACGCGTTCAAAAAGTA
GCAAGCATATGATGAGCTCTGCTGCTGTCACTCCCCGAGGAACGTCTGAC
AGCAAACTCCCAGCTACGATGGTAGAATCAGCGAAAGGCGTGGTCGGTCC
AGCAGTAGGAATTGAGGATGCAGCATCAGCGGAGGACTGCCCACCTGGGT
TAGGGGTGGCCAGAGAATCGAGCGGCGAACAAGCCGACAGGCCATTGCTG
GACCGGGAGGCGACGTTCCTGACTGCGGTGACGGTACCTGGAGAGTGAGT
TGCTGTTGTGTGCCCCGGTGCAAAAGAATGGAAAGTAACAGTAAGAGACG
AAAAAAGGAGCCGGTGTGTGCTACAGAGTAGCCTGCATGTTACCATGAAT
TTGAAGCAGACACACTGTATTGGTTTCAGGTGCTCAGAAGATAGACTAGG
TAAACCAGGCTCGTGTGAGCCACAAAAGGTATTTAAGGTCGGATTTCCAC
CGGGCATCCTTGATGCCAGACCAACGTACATTGCGCAACGTCGAGTTTCC
AGAAATACACAAGTATGTTGACGCAGATAATATGCACAGGAAAAACTTGA
GAAATGGACAATGTATGCTTCAAGAAGAAAAAGAATGTACGCTTGTGTGG
AGAGCGAGTAGATCCCACCTTTTCACGTTTTGTCATGACTGAGTGCCTTG
GGCAATCGTCTGCGCATGCAAAAGCACGAACGATAAGTCATGATGTGACA
TTCAACACATGGATTCGATAGGAATTTAAGGATCATGGACGGGGAGGCGG
CTACAACAGCAGGGGGTGTGGCGAAGGCTACGGTACAAGCGGAGCGGGGC
GGCTATGCCCCGCGGTTGACGGACTCGCGAAGCCTGATGGCCGAGATAAT
GACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10215:403..1456+

>mRNA_E-fasciculatus_F_contig10215.207.1 ID=mRNA_E-fasciculatus_F_contig10215.207.1|Name=mRNA_E-fasciculatus_F_contig10215.207.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10215:403..1456+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGAGCTCTGCTGCTGTCACTCCCCGAGGAACGTCTGACAGCAAACT
CCCAGCTACGATGGTAGAATCAGCGAAAGGCGTGGTCGGTCCAGCAGTAG
GAATTGAGGATGCAGCATCAGCGGAGGACTGCCCACCTGGGTTAGGGGTG
GCCAGAGAATCGAGCGGCGAACAAGCCGACAGGCCATTGCTGGACCGGGA
GGCGACGTTCCTGACTGCGGTGACGGTACCTGGAGAATGATGAGCTCTGC
TGCTGTCACTCCCCGAGGAACGTCTGACAGCAAACTCCCAGCTACGATGG
TAGAATCAGCGAAAGGCGTGGTCGGTCCAGCAGTAGGAATTGAGGATGCA
GCATCAGCGGAGGACTGCCCACCTGGGTTAGGGGTGGCCAGAGAATCGAG
CGGCGAACAAGCCGACAGGCCATTGCTGGACCGGGAGGCGACGTTCCTGA
CTGCGGTGACGGTACCTGGAGAGAATTTAAGGATCATGGACGGGGAGGCG
GCTACAACAGCAGGGGGTGTGGCGAAGGCTACGGTACAAGCGGAGCGGGG
CGGCTATGCCCCGCGGTTGACGGACTCGCGAAGCCTGATGGCCGAGATAA
TGACGGAATTTAAGGATCATGGACGGGGAGGCGGCTACAACAGCAGGGGG
TGTGGCGAAGGCTACGGTACAAGCGGAGCGGGGCGGCTATGCCCCGCGGT
TGACGGACTCGCGAAGCCTGATGGCCGAGATAATGACG
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