mRNA_E-fasciculatus_F_contig12705.2064.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12705.2064.1
Unique NamemRNA_E-fasciculatus_F_contig12705.2064.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12705.2064.1 vs. uniprot
Match: D7FNE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE0_ECTSI)

HSP 1 Score: 457 bits (1177), Expect = 1.310e-150
Identity = 240/296 (81.08%), Postives = 249/296 (84.12%), Query Frame = 1
Query:  208 MDIDAQRCRKHRRRPRSLLEVHSPHAVRDE--GSESEEGEGRKGKTRTPRWLETHIWHAKRMHMKHAWGFVLPAESNRGPRAAVEAALKHCTLQDLTFMRPLELRGPRWCILGALSAVTDPLDSRPKQQSCVDGFVEARTHLYRVNEFPLGCVAPVSVLWAPSDSAT--NTXXXXXXXXXXXXXXXXXGLSAXXXXXXXXXXXATQGEEXXXTGGPTNGLEEEREDVRRVWVWVHPAAAKEALREIRKACDLEGSPWQGCVQAGPVPGGLCRLRVRGARSHETVQRVLRTAAATAA 1083
            MD+DAQRCRKHRRRPR+LLE+HSPHAVRDE  G E E G+GRK     PRWLETHIWHAKRMHMKHAWGFVLPAESNRGPRAAVEAALKHCTLQDLTFMRPLELRGPRWCILGALSAVTDPLDSRPKQQSCVDGFVEA THLYR NEFPLGCVAPV+VLWAPSDSA   N                     A   XXXXXXX AT+G E   TGG  +GLEE +EDVRRVWVWVHPAAAKEALREIRKACDLEGSPWQGCVQAGPVPGGLCRLRVRGARSHETVQRVL+TAAATAA
Sbjct:    1 MDVDAQRCRKHRRRPRALLEMHSPHAVRDEESGGEDEAGKGRK-----PRWLETHIWHAKRMHMKHAWGFVLPAESNRGPRAAVEAALKHCTLQDLTFMRPLELRGPRWCILGALSAVTDPLDSRPKQQSCVDGFVEAHTHLYRTNEFPLGCVAPVTVLWAPSDSAATANDEDARTNDRDTDGKNGTSAPEAGGDXXXXXXXRATEGREEGGTGGTPDGLEERQEDVRRVWVWVHPAAAKEALREIRKACDLEGSPWQGCVQAGPVPGGLCRLRVRGARSHETVQRVLQTAAATAA 291          
BLAST of mRNA_E-fasciculatus_F_contig12705.2064.1 vs. uniprot
Match: A0A6H5J7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Y8_9PHAE)

HSP 1 Score: 447 bits (1151), Expect = 7.000e-147
Identity = 245/296 (82.77%), Postives = 250/296 (84.46%), Query Frame = 1
Query:  208 MDIDAQRCRKHRRRPRSLLEVHSPHAVRDEGSESEEGEGRKGKTRTPRWLETHIWHAKRMHMKHAWGFVLPAESNRGPRAAVEAALKHCTLQDLTFMRPLELRGPRWCILGALSAVTDPLDSRPKQQSCVDGFVEARTHLYRVNEFPLGCVAPVSVLWAPSDSATNTXXXXXXXXXXXXXXXXXGLSAXXXXXXXXXXXATQGEEXXXTGGPTNGLEEEREDVRRVWVWVHPAAAKEALREIRKACDLEGSPWQGCVQAGPVPGGLCRLRVRGARSHETVQRVLRTAAATAAANVA 1095
            MDIDAQRCRKHRRRPRSLLE+HSPHAVRDE S    GE   GK  TPRWLETHIWHAKRMHMKHAWGFVLPAESNRGPRAAVEAALKHCTLQDLTFMRPLELRGPRWCILGALSAVTDPLDSRPKQQSCVDGFVEARTHLYR NEFPLGCVAPV+VLWAPSDSA +                  G SA  XXXXXXXXX      XXX GG  +GLEE+ EDVRRVW WVHPAAAKEALREIRKACDLEGSPWQGCVQAGPVPGGLCRLRVRG RSHETVQRVLRTAAATAA NVA
Sbjct:    1 MDIDAQRCRKHRRRPRSLLEIHSPHAVRDEESG---GESEAGKGCTPRWLETHIWHAKRMHMKHAWGFVLPAESNRGPRAAVEAALKHCTLQDLTFMRPLELRGPRWCILGALSAVTDPLDSRPKQQSCVDGFVEARTHLYRANEFPLGCVAPVTVLWAPSDSAASANNEDARKNDHDADGNN-GTSAPEXXXXXXXXXXXXX--XXXXGGAPDGLEEQEEDVRRVWAWVHPAAAKEALREIRKACDLEGSPWQGCVQAGPVPGGLCRLRVRGTRSHETVQRVLRTAAATAA-NVA 289          
BLAST of mRNA_E-fasciculatus_F_contig12705.2064.1 vs. uniprot
Match: UPI0014550F01 (ribonucleases P/MRP protein subunit POP1-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014550F01)

HSP 1 Score: 125 bits (313), Expect = 1.130e-27
Identity = 101/318 (31.76%), Postives = 144/318 (45.28%), Query Frame = 1
Query:    7 QALPRHMRRRTTSHTPRRMPVALKNSGGAAPNNGRGRSSKNKRPGRRQGSAAKSSSSKGDARGPGGDMDIDAQRCRKHRRRPRSLLEVHSPHAVRDEGSESEEGEGRKGKTRTPRWLETHIWHAKRMHMKHAWGFVLPAE-SNRGPRAAVEAALKHCTLQDLTFMRPLELRGPRWCILGALSAVTDPLDSRP-KQQSCVDGFVEARTHLYRVNEFPLGCVAPVSVLWAPSDSATNTXXXXXXXXXXXXXXXXXGLSAXXXXXXXXXXXATQGEEXXXTGGPTNGLEEEREDVRRVWVWVHPAAAKEALREIRKACDLE 954
            Q LPRH+RRR  SH  RR+P  L+ S   A N G      NK+ GR +         +GD     G+    A+R R+HRRRP +L         RDE    +         R+  WLETHIWHAKR  M   WG  LP   S++  RA   A +KHC +QD+++M+ +E+ G +   L ALS +T P         S + G     T LY+ ++FP G + PV+ LW       ++                                 T  +E   +    N LE+    VR++WVW HPA  +  ++E++ AC+ E
Sbjct:   53 QKLPRHLRRRAMSHDLRRLPKRLRESEERAMNKGA-----NKKTGRGK---------EGD-----GETSAPAKRSRRHRRRPSNL---------RDEYQRRQ---------RSNTWLETHIWHAKRFKMAELWGHRLPLHPSDKSVRATYRALVKHCLIQDISYMKVIEVSGQQGHTLKALSHLTSPSTGLTCAAASYLSGQRHGDTVLYKYDQFPEGALGPVNFLWRAEGGFKSSSKPEET--------------------------TTVDQEGMLSVRKANKLEDS--SVRQLWVWAHPACTEVLVKELQTACENE 305          
BLAST of mRNA_E-fasciculatus_F_contig12705.2064.1 vs. uniprot
Match: A0A8B7Y7J8_ACAPL (ribonucleases P/MRP protein subunit POP1-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y7J8_ACAPL)

HSP 1 Score: 122 bits (306), Expect = 9.420e-27
Identity = 102/364 (28.02%), Postives = 155/364 (42.58%), Query Frame = 1
Query:    7 QALPRHMRRRTTSHTPRRMPVALKNSGGAAPNNGRGRSSKNKRPGRRQGSAAKSSSSKGDARGPGGDMDID---AQRCRKHRRRPRSLLEVHSPHAVRDEGSESEEGEGRKGKTRTPRWLETHIWHAKRMHMKHAWGFVLPAE-SNRGPRAAVEAALKHCTLQDLTFMRPLELRGPRWCILGALSAVTDPLDSRPKQQSCVDGFVEARTH----LYRVNEFPLGCVAPVSVLWAPSDSATNTXXXXXXXXXXXXXXXXXGLSAXXXXXXXXXXXATQGEEXXXTGGP--TNGLEEEREDVRRVWVWVHPAAAKEALREIRKACDLEGSPWQGC--VQAGPVPGGLCRLRVRGARSHETVQRVLR 1062
            Q LPRH+RRR  SH  RR+P  L++S                     + +  KS   K   +G  G  + D   A+R R+HRRRP +L   +     R +G  +              WLETHIWHAKR  M   WG+ LP   S++  RA   A  +HC LQD++++R +E+ GP+   L ALS +T P             F+  + H     YR ++FP G + PV  LW    +  ++                                  + +E    G P  + G + E + VR++W+W HP+ A E L+E++ A + E +       V    +     R R++G  SH  +   L+
Sbjct:   53 QKLPRHLRRRAMSHDLRRLPKRLRDS--------------------EERTMQKSMHKKKAGQGKEGGAEEDLPPAKRSRRHRRRPSNLKAEYQ----RRQGGHA--------------WLETHIWHAKRFKMVGQWGYKLPLHPSDKSIRATYRAMARHCLLQDVSYLRVVEMSGPQGLTLRALSRLTSPSTGLT---CAAAAFLSGQRHGEAVFYRKDQFPQGAIGPVQFLWKAEATLADSVPKAKG----------------------------ESQEGCEAGMPAASPGGKFEEKGVRKLWLWAHPSCASELLKELKAASEAENANTDSNSRVTVTQLKDSPLRFRLQGPLSHPVLLHALK 347          
BLAST of mRNA_E-fasciculatus_F_contig12705.2064.1 vs. uniprot
Match: A0A7M7NLS1_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NLS1_STRPU)

HSP 1 Score: 118 bits (295), Expect = 2.630e-25
Identity = 96/359 (26.74%), Postives = 151/359 (42.06%), Query Frame = 1
Query:    7 QALPRHMRRRTTSHTPRRMPVALKNSGGAAPNNGRGRSSKNKRPGRRQGSAAKSSSSKGDARGPGGDMDIDAQRCRKHRRRPRSLLEVHSPHAVRDEGSESEEGEGRKGKTRTPRWLETHIWHAKRMHMKHAWGFVLPAE-SNRGPRAAVEAALKHCTLQDLTFMRPLELRGPRWCILGALSAVTDP-LDSRPKQQSCVDGFVEARTHLYRVNEFPLGCVAPVSVLWAPSDSATNTXXXXXXXXXXXXXXXXXGLSAXXXXXXXXXXXATQGEEXXXTGGPTNGLEEEREDVRRVWVWVHPAAAKEALREIRKACDLEGSPWQGCVQAGPVPGGLCRLRVRGARSHETVQRVLRTAAAT 1077
            Q LPRH++RR  SH  +RMP  L++                          A+    K   + P  D D  A++ R+HRRRP +L E ++   +R+                  RWLETHIWHAKR  M   WG+ +P   S++  RAA  A  +HC + D+++ + +E++G    IL A+  +T P +      ++ + G       LY+ + +P G + PV  LW     A+                                  A + +E     G  NG +E+    RR+W+WVHP+  +E L E++  C          V   P+   L R R++G  +H  +   L+ A  T
Sbjct:   54 QKLPRHIQRRAMSHNIKRMPRRLRD-------------------------IARIEVEKNPQKKPKSDADGAAKKSRRHRRRPGNLREEYAKRQMRN------------------RWLETHIWHAKRFKMVERWGWKIPLHPSDKSARAAYRATARHCVMSDISYHQVIEVQGSEVNILSAMKHLTSPQVGLTMASRAYLHGTRHGEVLLYQKDTYPHGAIGPVDYLWHCELHAS------------------------------PPAGAAERQELKREDG-VNGDDEKVTTDRRLWMWVHPSCWREVLEELKGVCSDYN------VSITPLEDELLRFRLQGPLAHPILLDALQVAMVT 332          
BLAST of mRNA_E-fasciculatus_F_contig12705.2064.1 vs. uniprot
Match: A0A329S154_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S154_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.590e-23
Identity = 84/280 (30.00%), Postives = 119/280 (42.50%), Query Frame = 1
Query:  211 DIDAQRCRKHRRRPRSLLEVHSPHAVRDEGSESEEGEGRKGKTRTPRWLETHIWHAKRMHMKHAWGFVLPAE-SNRGPRAAVEAALKHCTLQDLTFMRPLELRGPRWCILGALSAVTDPLDSRPKQQSCVDGFVEARTHLYRVNEFPLGCVAPVSVLWAPSDSATNTXXXXXXXXXXXXXXXXXGLSAXXXXXXXXXXXATQGEEXXXTGGPTNGLEEEREDVRRVWVWVHPAAAKEALREIRKACDLEGSPWQGCVQAGPVPGGLCRLRVRGARSHETV 1047
            D  A RCRKH RRP  LL+  S         +SE           PRWL TH+WHAKRM M   +G++L    +++   AA++A  K  TL D ++   +EL G    IL AL  V+DP  S       + G  E  + LY   +FP G +APV+ +W P     ++                                           G     E+ +   R++W+WVHPAA  EA   I  AC    +  +  ++     G LCRL++RG  + E V
Sbjct:   72 DQSALRCRKHERRPHKLLQARS-------NVDSER----------PRWLSTHLWHAKRMTMSEQYGYILALHRADKSASAALQAVRKMATLHDSSYYGVIELYGLPQVILEALQLVSDPNGSDFHGLRFLAGSEEGTSMLYHEGQFPQGAIAPVTFMWRPLKRDYDS-------------------------------------------GEFKLHEDWQNTKRQLWIWVHPAAYMEAATAIAAACQEVVAEDEEGIEMHDRRGQLCRLKLRGRLADELV 291          
BLAST of mRNA_E-fasciculatus_F_contig12705.2064.1 vs. uniprot
Match: UPI001BB2B30D (ribonucleases P/MRP protein subunit POP1-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2B30D)

HSP 1 Score: 111 bits (278), Expect = 4.250e-23
Identity = 89/359 (24.79%), Postives = 146/359 (40.67%), Query Frame = 1
Query:    7 QALPRHMRRRTTSHTPRRMPVALKNSGGAAPNNGRGRSSKNKRPGRRQGSAAKSSSSKGDARGPGGDMDIDAQRCRKHRRRPRSLLEVHSPHAVRDEGSESEEGEGRKGKTRTPRWLETHIWHAKRMHMKHAWGFVLPAE-SNRGPRAAVEAALKHCTLQDLTFMRPLELRGPRWCILGALSAVTDP-LDSRPKQQSCVDGFVEARTHLYRVNEFPLGCVAPVSVLWAPSDSATNTXXXXXXXXXXXXXXXXXGLSAXXXXXXXXXXXATQGEEXXXTGGPTNGLEEEREDVRRVWVWVHPAAAKEALREIRKACDLEGSPWQGCVQAGPVPGGLCRLRVRGARSHETVQRVLRTAAAT 1077
            Q LPRHMRRR  SH  +RMP  L+ +                         A+  + +   + P  D    A++ R+HRRRP +L E+++   +R+                  RW+ETHIWHAKR  M   WG+ +P   S++  RA   A  +HC + D+++ + +E++G    I+ A+  +T P +      ++ + G       LY  + +P G + PV  LW     A+                                      +E    GG  +        +RR+W+W+HP+  KE + E++  C          V   P+   L R R++G  +H  +   L+ A  T
Sbjct:   54 QKLPRHMRRRAMSHNIKRMPRRLREN-------------------------ARIQAERSVKKKPKQDTTGAAKQSRRHRRRPGNLREMYAKRQMRN------------------RWMETHIWHAKRFKMVERWGWKIPLHPSDKSARAVYRATARHCVISDISYHQVIEVQGTEVNIISAMKHLTSPHVGLTMASRAYLHGTRHGGVLLYHRDTYPHGAIGPVDYLWHCELHASMAPP------------------------------GAHSQELNSNGGDDDNK------IRRLWMWIHPSCWKEVIDELKVVCSDYN------VSVTPLEDELLRFRLQGPLAHPILLDALQVATVT 327          
BLAST of mRNA_E-fasciculatus_F_contig12705.2064.1 vs. uniprot
Match: M4BLU4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BLU4_HYAAE)

HSP 1 Score: 108 bits (269), Expect = 5.740e-22
Identity = 78/282 (27.66%), Postives = 122/282 (43.26%), Query Frame = 1
Query:  214 IDAQRCRKHRRRPRSLLEVHSPHAVRDEGSESEEGEGRKGKTRTPRWLETHIWHAKRMHMKHAWGFVLPAE-SNRGPRAAVEAALKHCTLQDLTFMRPLELRGPRWCILGALSAVTDPLDSRPKQQSCVDGFVEARTHLYRVNEFPLGCVAPVSVLWAPSDSATNTXXXXXXXXXXXXXXXXXGLSAXXXXXXXXXXXATQGEEXXXTGGPTNGLEEEREDVRRVWVWVHPAAAKEALREIRKACDLEGSPWQGCVQAGPVPGGLCRLRVRGARSHETVQRV 1056
            + + RCRKH+RRPR LL+  S  +  D                 PRWL +H++HAKRM M   +G++L A  S++   AA++A      + D+++   +EL G    IL AL  ++DP  S    +  + G  E  + LY V  FP G +APV+ +W P     ++                                                 E+ +   R++W+WVHPAA  E+   I  AC   G+  +  ++     G LCRL++RG  + E V  +
Sbjct:   72 LGSLRCRKHKRRPRMLLQERSSLSKADADR--------------PRWLPSHLYHAKRMAMVAQYGYILAAHRSDKSVSAALQAVRTKAMIHDVSYYGVIELYGLPSVILTALQLISDPNGSDFHGRRFLAGDEEGHSMLYHVGRFPQGAIAPVTFMWRPLKRDYDSDRFMLH-------------------------------------------EDWQSTKRQLWLWVHPAAYMESATAIATACQEVGNTDEDSIEMLDRRGQLCRLKLRGRIADELVANI 296          
BLAST of mRNA_E-fasciculatus_F_contig12705.2064.1 vs. uniprot
Match: A0A2P4YKS9_9STRA (Ribonucleases P/MRP protein subunit n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YKS9_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.310e-21
Identity = 83/280 (29.64%), Postives = 120/280 (42.86%), Query Frame = 1
Query:  220 AQRCRKHRRRPRSLLEVHSPHAVRDEGSESEEGEGRKGKTRTPRWLETHIWHAKRMHMKHAWGFVLPAE-SNRGPRAAVEAALKHCTLQDLTFMRPLELRGPRWCILGALSAVTDPLDSRPKQQSCVDGFVEARTHLYRVNEFPLGCVAPVSVLWAPSDSATNTXXXXXXXXXXXXXXXXXGLSAXXXXXXXXXXXATQGEEXXXTGGPTNGLEEEREDVRR-VWVWVHPAAAKEALREIRKAC-DLEGSPWQGCVQAGPVPGGLCRLRVRGARSHETVQ 1050
            A RCRKH RRP  LL+      V D              +  PRWL +H+WHAKRM M+  +G++L    +++   AA++A  +     D ++   +EL G    IL AL  V+DP  S       + G  E R+ LY   +FP G +APV+ +W P     +                                            GP   L E  +  +R +W+WVHPAA  EA   I  AC ++ G    G ++     G LCRL++RG  + E V+
Sbjct:   75 ASRCRKHERRPHKLLQ---DRCVAD--------------SERPRWLSSHLWHAKRMTMRSQYGYILAVHRADKSVSAALQAVREKAISHDASYYGVIELFGLPQMILEALQLVSDPNGSDFHGLKFLAGTDEGRSMLYHEGQFPQGAIAPVTFMWRPLKKDYD--------------------------------------------GPEFKLHEGWQQTKRQLWLWVHPAAYMEAAMAIAAACQEVVGEDEDG-IEMHDRRGQLCRLKLRGRLADELVE 292          
BLAST of mRNA_E-fasciculatus_F_contig12705.2064.1 vs. uniprot
Match: A0A7R9FNY3_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9FNY3_9CRUS)

HSP 1 Score: 104 bits (260), Expect = 8.080e-21
Identity = 77/242 (31.82%), Postives = 108/242 (44.63%), Query Frame = 1
Query:    7 QALPRHMRRRTTSHTPRRMPVALKNSGGAAPNNGRGRSSKNKRPGRRQGSAAKSSSSKGDARGPGGDMDIDAQRCRKHRRRPRSLLEVHSPHAVRDEGSESEEGEGRKGKTRTPRWLETHIWHAKRMHMKHAWGFVLP-AESNRGPRAAVEAALKHCTLQDLTFMRPLELRGPRWCILGALSAVTDP---------LDSRPKQQSCVDGFVEARTHLYRVNEFPLGCVAPVSVLWAPSDSAT 702
            Q LP+H+RRR  SH P+R+P  ++   G           + KRP                               RK+RRRP+ L                 + E  + + R P+WLETH+WHAKR HMK  WG+ +P + +++G R A  A    C + DL++ R LELRG    IL AL  +  P            R +++ CV         LY+ N +PLG + PVS LW PS+  T
Sbjct:   60 QQLPQHLRRRAASHNPKRLPARIRQLAGTQT------PKEPKRP------------------------------SRKYRRRPKIL-----------------KSEYYRRQKRGPKWLETHVWHAKRFHMKEKWGWKIPLSPTDKGTRFAYRATTNSCIIFDLSYWRCLELRGLEANILRALQPMNPPECGPSFGGIAQLRLQREGCVV--------LYQPNTYPLGAIGPVSFLWLPSEEET 240          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12705.2064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNE0_ECTSI1.310e-15081.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7Y8_9PHAE7.000e-14782.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0014550F011.130e-2731.76ribonucleases P/MRP protein subunit POP1-like n=1 ... [more]
A0A8B7Y7J8_ACAPL9.420e-2728.02ribonucleases P/MRP protein subunit POP1-like n=1 ... [more]
A0A7M7NLS1_STRPU2.630e-2526.74Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
A0A329S154_9STRA1.590e-2330.00Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
UPI001BB2B30D4.250e-2324.79ribonucleases P/MRP protein subunit POP1-like n=1 ... [more]
M4BLU4_HYAAE5.740e-2227.66Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A2P4YKS9_9STRA1.310e-2129.64Ribonucleases P/MRP protein subunit n=2 Tax=Phytop... [more]
A0A7R9FNY3_9CRUS8.080e-2131.82Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12705contigE-fasciculatus_F_contig12705:457..3858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score460.3
Seed ortholog evalue8.2e-127
Seed eggNOG ortholog2880.D7FNE0
Preferred namePOP1
KEGG rclassRC00037,RC00094
KEGG koko:K01164,ko:K16794
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,ko03008,ko03013,map00565,map01100,map03008,map03013
GOsGO:0000049,GO:0000171,GO:0000172,GO:0000294,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005655,GO:0005697,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006379,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016078,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019222,GO:0019439,GO:0022613,GO:0030490,GO:0030677,GO:0030681,GO:0031070,GO:0031974,GO:0031981,GO:0032991,GO:0033967,GO:0034470,GO:0034471,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0034963,GO:0034965,GO:0042254,GO:0042274,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099116,GO:0140098,GO:0140101,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1902555,GO:1905267,GO:1905348,GO:1990904
EggNOG free text desc.ribonuclease MRP activity
EggNOG OGsKOG3322@1,KOG3322@2759
EC3.1.26.5
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029,ko03036,ko04147
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRibonuclease P/MRP, subunit POP1
Ec32 orthologEc-22_001370.1
Exons5
Model size1098
Cds size1074
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12705.2064.1prot_E-fasciculatus_F_contig12705.2064.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12705 481..3858 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927778.5089545-UTR-E-fasciculatus_F_contig12705:456..4801622927778.5089545-UTR-E-fasciculatus_F_contig12705:456..480Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12705 457..480 +
1695995690.0721686-UTR-E-fasciculatus_F_contig12705:456..4801695995690.0721686-UTR-E-fasciculatus_F_contig12705:456..480Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12705 457..480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927778.5213165-CDS-E-fasciculatus_F_contig12705:480..8061622927778.5213165-CDS-E-fasciculatus_F_contig12705:480..806Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12705 481..806 +
1695995690.082922-CDS-E-fasciculatus_F_contig12705:480..8061695995690.082922-CDS-E-fasciculatus_F_contig12705:480..806Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12705 481..806 +
1622927778.5582297-CDS-E-fasciculatus_F_contig12705:1527..16111622927778.5582297-CDS-E-fasciculatus_F_contig12705:1527..1611Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12705 1528..1611 +
1695995690.0924416-CDS-E-fasciculatus_F_contig12705:1527..16111695995690.0924416-CDS-E-fasciculatus_F_contig12705:1527..1611Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12705 1528..1611 +
1622927778.5731995-CDS-E-fasciculatus_F_contig12705:2054..22521622927778.5731995-CDS-E-fasciculatus_F_contig12705:2054..2252Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12705 2055..2252 +
1695995690.1015959-CDS-E-fasciculatus_F_contig12705:2054..22521695995690.1015959-CDS-E-fasciculatus_F_contig12705:2054..2252Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12705 2055..2252 +
1622927778.5832503-CDS-E-fasciculatus_F_contig12705:3063..34121622927778.5832503-CDS-E-fasciculatus_F_contig12705:3063..3412Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12705 3064..3412 +
1695995690.1103756-CDS-E-fasciculatus_F_contig12705:3063..34121695995690.1103756-CDS-E-fasciculatus_F_contig12705:3063..3412Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12705 3064..3412 +
1622927778.5946214-CDS-E-fasciculatus_F_contig12705:3741..38581622927778.5946214-CDS-E-fasciculatus_F_contig12705:3741..3858Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12705 3742..3858 +
1695995690.1200986-CDS-E-fasciculatus_F_contig12705:3741..38581695995690.1200986-CDS-E-fasciculatus_F_contig12705:3741..3858Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12705 3742..3858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12705.2064.1

>prot_E-fasciculatus_F_contig12705.2064.1 ID=prot_E-fasciculatus_F_contig12705.2064.1|Name=mRNA_E-fasciculatus_F_contig12705.2064.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=358bp
MRRRTTSHTPRRMPVALKNSGGAAPNNGRGRSSKNKRPGRRQGSAAKSSS
SKGDARGPGGDMDIDAQRCRKHRRRPRSLLEVHSPHAVRDEGSESEEGEG
RKGKTRTPRWLETHIWHAKRMHMKHAWGFVLPAESNRGPRAAVEAALKHC
TLQDLTFMRPLELRGPRWCILGALSAVTDPLDSRPKQQSCVDGFVEARTH
LYRVNEFPLGCVAPVSVLWAPSDSATNTTNDDDNRNNDHDGDDNVGLSAP
EAGGGGGGGRATQGEEEGGTGGPTNGLEEEREDVRRVWVWVHPAAAKEAL
REIRKACDLEGSPWQGCVQAGPVPGGLCRLRVRGARSHETVQRVLRTAAA
TAAANVAA
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mRNA from alignment at E-fasciculatus_F_contig12705:457..3858+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12705.2064.1 ID=mRNA_E-fasciculatus_F_contig12705.2064.1|Name=mRNA_E-fasciculatus_F_contig12705.2064.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3402bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12705:457..3858+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGTCGCAGGCTTTGCCGAGACACATGCGAAGGCGCACGACCTCGCACAC GCCGCGCCGCATGCCCGTAGCGCTCAAGAACAGCGGTGGTGCCGCCCCTA ATAATGGCCGCGGCCGCAGCAGCAAGAACAAGCGCCCTGGCAGGCGGCAA GGCTCGGCAGCGAAGTCGAGCTCTTCCAAAGGAGATGCGAGGGGACCGGG GGGTGATATGGACATAGACGCCCAGAGGTGCAGGAAGCATCGCAGGAGAC CGAGGTCGCTACTAGAGGTGCACAGTCCCCACGCCGTACGGGACGAAGGG AGCGAGAGCGAGGAAGGCGAGGGCAGAAAGGGAAAGACCCGGACACCGAG GTAGGATCGTCTCGTCTCTGGATAACCCCACCCCCGATGCTGAAATCGAC ATAGTTATGTGTGTGCCGGCAGGCGTCATCTGCCGAGTTAAGCCCGTGGA AAAGGGTACCAAGGTAGCGCTGTAACTTGCAAGGCAAGTGATCGAAAAGG CCACGGGGGAGAAGCAGTAGGTTGGAAGTGTCTTTCGTTGGATATCGACT GCTGTGTCGTCGTTTTCAGCGATCGGTGGCTGGGGCAGCGGGCGCAGAGG CACACACTCGTCGAATGGGAGAGCGGCGTTCTGTGTAGGTGTTCAACAGT CGAGTCGACCCTGCTACAGTAACTGGCTGCTGACCAGTGCAAGACGTCAG TCTTACGAGAGAGAGGTGTGTGTGTGTTTCGTGGGAGGGGTAGGAAGGGA GCAAACGGAGCCTGCCTTGATCAGAGTTGGAAATCCTCGTCCGTAGCGTT ATTGTCGGGTGGTATGTAGCCTACGCGGGTGACACCACGCGCCTCGTGGG TGTTTGGTTTCTGGGCTTTTCTTGCCTACATTGCCCCCCCCGCCCGCAAT TTTTTCTCCCCCTGAGGAAGAGAGCGCTCTCGGAGAAATTTCTGCGGGAA GGTTCTTCTGGTTTGATTGCATGCACCACATTCTTCCGGCCGACGGTCGT CCAGAGACTCTCTTTCCCGTCTTCTCGTTCGTGCCTTTCGGTGCTTGGGG GGAAAATTTTGCGTGCCTCAGGTGGCTGGAGACCCACATCTGGCACGCGA AGAGGATGCACATGAAGCATGCCTGGGGCTTCGTGCTTCCTGCCGAGAGC AACAGGTGCGCTCGTTCGTGCCTGACCTATTTCCTCTTCTGTCTTTGTCT TTGTCTTTGTCGTTTTTGTTGATGCCTCTGCGTTGTGAGAGAGGCTGAGC GAGAGCTACCGCAGTATTGGCTGAAAAACGACTGTAGGTAACACATTTCC GTTTACACCGGGCACTTGTTGTGCGACCAAGTCCTCTCCACTGCTGTAAT TTCACTTCGCATCACCGGCCAAATAATCCAAGCACTTCTGTATCCACTCC ACTTGTCCCTCGCAATGATCCGTCACAATGCACAGTTGTGCGTGTGTTTG TGCCATCTTCTCTTGAATGTGCGGTTACTTCTTTGGCAAGCATCAGCGCC CTCTGACCTGTGCAAACAAGCTAGTCTCAAAAGCTGAACTGGCCATGCGC ACGCGTGCACATGCGTGCACGTTCTATCTCACTGCCGTCTTATCGCAGGG GCCCGCGGGCGGCGGTCGAAGCCGCCCTCAAGCACTGCACCCTCCAGGAC CTGACCTTCATGCGCCCGCTAGAGCTGCGGGGGCCCCGGTGGTGCATCCT AGGGGCTCTTTCCGCAGTCACCGACCCCCTGGACTCGAGACCGAAGCAAC AGAGCTGCGTCGACGGCTTTGTCGAGGCCCGTACACACCTCTACAGGTAC CTTGCCCGGAGTACTCCGACCCTTGCCATTATGGGGACGATTAGAGGCGC CTAAAAATATGGTACGCGTTTGTTTGGTTTCGTGCGGTCGTGGGCAGGTG GGCGCGTTTTCTGTCAATCTGTTCGCGTCGATCGACCGCGCTGATTGGAC GACCGATGATGAATACGTTAGTCTTACAAAACGTGTAGCGCGTGTGTGTG TTTGTTGGCGTGCTAGCTTTCAACCGCGCCAAAAGGCTGGCCAATAGATA GGCATCAGAACCAGCGGGTATGAACGAATCAAAGCCTCTGGACGAGGGAC CAAGTTCGAAGAATGGGCGTCTCCCATAGTGTCTACACGACACTCTCTAC AAACCCTTTGCAGTACAAACGGCACCGTGTTTAGCTTTGTGCGCGCTAGC GCTCAAACCTAAGAAGTTGATGATCGACAGAGAGCGGAGAACCCCGAAAG GGCTATTTGGAGCCTGGCCGAACCTGCCATCATATCGCTACATGCTGCTT CTCCTAAGCTGAAAACCGTACACTCACAAGATCCAGCAGTACTGGCCATC CAAGAGCGCGAGGACGGTATATTGTAGTCTGTTCACACGCTGAATGTTGG CCGTATCCATGGTAGGGTTAAGGTTGGTGTCCCGTGCGCCCATTCGCTCG CAGCTCCGTAGCGTCGTCGCGAACGGCCGGCGAGCATCGACGCCACCATA AGTGCCTCCACCACCACCACCACCGACAATATCGCCACGGTTGCTATTCC TCGTCGTGCTTCTTCTTGACCGCGTCCTCGTACTGGAACCGTCTCGAACC CGTCCAGAGTGAACGAGTTCCCGCTCGGGTGTGTCGCGCCCGTCTCGGTC TTGTGGGCCCCCTCCGACTCCGCCACCAACACCACCAACGACGACGACAA CAGAAACAACGACCACGATGGTGACGACAATGTCGGCTTGTCGGCACCCG AAGCAGGCGGCGGCGGCGGTGGCGGGCGAGCTACCCAGGGCGAAGAGGAG GGGGGTACCGGGGGACCGACGAATGGGCTGGAAGAAGAACGAGAAGACGT TCGTCGTGTGTGGGTGTGGGTGCACCCGGCGGCGGCGAAGGAAGCTTTAC GGGAGATTAGGAAGGCGTGCGATCTAGAGGGGTCGCCTTGGCAGGGCTGT GTGCAGGTAGGTGCTGCACCCTCTACCATCGTGTAAGTTTGAACGAGGCA GGGACTAATTTCTTTTTTTTTCCTGATCCAATTAAGTAAGTAAAACTGTC GTAAGGATTGGCGGGGCCTATTTTGCCACTTTCTCGGAGAACGGGCGTCC CGCTCGAAACGCTGCCGATGCTGACTACGTTCTAATTGGAGGCGATTTCG GACGGCCAATCAATTCGAGAGCCACTTTTAAGATCTAGCATGTGTTCGAC GAAGATATAAACGATGATGGATGTAGTCTTTGTCCGGGCACCAAGCAGCT TCCTGATGCCCTTTTTGTTTCTTCGATTTCTCAAGGCGGGACCCGTGCCG GGCGGCCTTTGCCGGCTGCGAGTCAGAGGTGCCCGGTCGCACGAAACCGT GCAGCGGGTACTACGAACAGCGGCGGCAACAGCAGCAGCAAACGTGGCAG CA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12705:457..3858+

>mRNA_E-fasciculatus_F_contig12705.2064.1 ID=mRNA_E-fasciculatus_F_contig12705.2064.1|Name=mRNA_E-fasciculatus_F_contig12705.2064.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2148bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12705:457..3858+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGAAGGCGCACGACCTCGCACACGCCGCGCCGCATGCCCGTAGCGCT
CAAGAACAGCGGTGGTGCCGCCCCTAATAATGGCCGCGGCCGCAGCAGCA
AGAACAAGCGCCCTGGCAGGCGGCAAGGCTCGGCAGCGAAGTCGAGCTCT
TCCAAAGGAGATGCGAGGGGACCGGGGGGTGATATGGACATAGACGCCCA
GAGGTGCAGGAAGCATCGCAGGAGACCGAGGTCGCTACTAGAGGTGCACA
GTCCCCACGCCGTACGGGACGAAGGGAGCGAGAGCGAGGAAGGCGAGGGC
AGAAAGGGAAAGACCCGGACACCGAGATGCGAAGGCGCACGACCTCGCAC
ACGCCGCGCCGCATGCCCGTAGCGCTCAAGAACAGCGGTGGTGCCGCCCC
TAATAATGGCCGCGGCCGCAGCAGCAAGAACAAGCGCCCTGGCAGGCGGC
AAGGCTCGGCAGCGAAGTCGAGCTCTTCCAAAGGAGATGCGAGGGGACCG
GGGGGTGATATGGACATAGACGCCCAGAGGTGCAGGAAGCATCGCAGGAG
ACCGAGGTCGCTACTAGAGGTGCACAGTCCCCACGCCGTACGGGACGAAG
GGAGCGAGAGCGAGGAAGGCGAGGGCAGAAAGGGAAAGACCCGGACACCG
AGGTGGCTGGAGACCCACATCTGGCACGCGAAGAGGATGCACATGAAGCA
TGCCTGGGGCTTCGTGCTTCCTGCCGAGAGCAACAGGTGGCTGGAGACCC
ACATCTGGCACGCGAAGAGGATGCACATGAAGCATGCCTGGGGCTTCGTG
CTTCCTGCCGAGAGCAACAGGGGCCCGCGGGCGGCGGTCGAAGCCGCCCT
CAAGCACTGCACCCTCCAGGACCTGACCTTCATGCGCCCGCTAGAGCTGC
GGGGGCCCCGGTGGTGCATCCTAGGGGCTCTTTCCGCAGTCACCGACCCC
CTGGACTCGAGACCGAAGCAACAGAGCTGCGTCGACGGCTTTGTCGAGGC
CCGTACACACCTCTACAGGGGCCCGCGGGCGGCGGTCGAAGCCGCCCTCA
AGCACTGCACCCTCCAGGACCTGACCTTCATGCGCCCGCTAGAGCTGCGG
GGGCCCCGGTGGTGCATCCTAGGGGCTCTTTCCGCAGTCACCGACCCCCT
GGACTCGAGACCGAAGCAACAGAGCTGCGTCGACGGCTTTGTCGAGGCCC
GTACACACCTCTACAGAGTGAACGAGTTCCCGCTCGGGTGTGTCGCGCCC
GTCTCGGTCTTGTGGGCCCCCTCCGACTCCGCCACCAACACCACCAACGA
CGACGACAACAGAAACAACGACCACGATGGTGACGACAATGTCGGCTTGT
CGGCACCCGAAGCAGGCGGCGGCGGCGGTGGCGGGCGAGCTACCCAGGGC
GAAGAGGAGGGGGGTACCGGGGGACCGACGAATGGGCTGGAAGAAGAACG
AGAAGACGTTCGTCGTGTGTGGGTGTGGGTGCACCCGGCGGCGGCGAAGG
AAGCTTTACGGGAGATTAGGAAGGCGTGCGATCTAGAGGGGTCGCCTTGG
CAGGGCTGTGTGCAGAGTGAACGAGTTCCCGCTCGGGTGTGTCGCGCCCG
TCTCGGTCTTGTGGGCCCCCTCCGACTCCGCCACCAACACCACCAACGAC
GACGACAACAGAAACAACGACCACGATGGTGACGACAATGTCGGCTTGTC
GGCACCCGAAGCAGGCGGCGGCGGCGGTGGCGGGCGAGCTACCCAGGGCG
AAGAGGAGGGGGGTACCGGGGGACCGACGAATGGGCTGGAAGAAGAACGA
GAAGACGTTCGTCGTGTGTGGGTGTGGGTGCACCCGGCGGCGGCGAAGGA
AGCTTTACGGGAGATTAGGAAGGCGTGCGATCTAGAGGGGTCGCCTTGGC
AGGGCTGTGTGCAGGCGGGACCCGTGCCGGGCGGCCTTTGCCGGCTGCGA
GTCAGAGGTGCCCGGTCGCACGAAACCGTGCAGCGGGTACTACGAACAGC
GGCGGCAACAGCAGCAGCAAACGTGGCAGCAGCGGGACCCGTGCCGGGCG
GCCTTTGCCGGCTGCGAGTCAGAGGTGCCCGGTCGCACGAAACCGTGCAG
CGGGTACTACGAACAGCGGCGGCAACAGCAGCAGCAAACGTGGCAGCA
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