mRNA_E-fasciculatus_F_contig12704.2063.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12704.2063.1
Unique NamemRNA_E-fasciculatus_F_contig12704.2063.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12704.2063.1 vs. uniprot
Match: D7FZ11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ11_ECTSI)

HSP 1 Score: 436 bits (1121), Expect = 7.390e-144
Identity = 234/244 (95.90%), Postives = 239/244 (97.95%), Query Frame = 1 
Query:    1 VGEGGGSLDGGEQTVVAKMLLRSAQMAAAEAKTGRRAAAGYQLGKEAKQEVREAVAELAEACLTHLPNLLAKYQSDDAKLALLAELPTCIPSEALASLVSGSGKGAFSDLVSRVKDAFLMSNSPLVMDAAASSLGWFLNADHAKRAEVQAVAQGMVEELFAKVSALCQQDQKAAPTPAKGKARGAGGKGRWKDTGIALASSFRRLRCLAGCTDASGCVDSTTLSEAWEGVEGAVRRRCLLDEVL 732
            VGEGGGSLDGGEQTVVAKMLLRSAQMAAAEAKTGRRAAAGYQLGKEAKQEVREAVAELAEACLTHLPNLLAKYQSDDAKLALLAELPTCIPSEALASLVSGSGKGAFSDLVSR+KDAFLMSNSPLVMDAAASSLGWFLNADHAKRAEV+AV QGMVEELFAKVSALCQQDQKA  TPAKGKA+GAGGKGRWKDTGI LA+SFRRLRCLAGCTDASGCVD TTLSEAWEGV+GAVRRRCLLDEVL
Sbjct:   38 VGEGGGSLDGGEQTVVAKMLLRSAQMAAAEAKTGRRAAAGYQLGKEAKQEVREAVAELAEACLTHLPNLLAKYQSDDAKLALLAELPTCIPSEALASLVSGSGKGAFSDLVSRMKDAFLMSNSPLVMDAAASSLGWFLNADHAKRAEVKAVVQGMVEELFAKVSALCQQDQKA--TPAKGKAKGAGGKGRWKDTGIGLANSFRRLRCLAGCTDASGCVDGTTLSEAWEGVQGAVRRRCLLDEVL 279
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12704.2063.1 vs. uniprot
Match: A0A6H5J7R4_9PHAE (SCD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R4_9PHAE)

HSP 1 Score: 422 bits (1086), Expect = 7.310e-135
Identity = 227/244 (93.03%), Postives = 234/244 (95.90%), Query Frame = 1 
Query:    1 VGEGGGSLDGGEQTVVAKMLLRSAQMAAAEAKTGRRAAAGYQLGKEAKQEVREAVAELAEACLTHLPNLLAKYQSDDAKLALLAELPTCIPSEALASLVSGSGKGAFSDLVSRVKDAFLMSNSPLVMDAAASSLGWFLNADHAKRAEVQAVAQGMVEELFAKVSALCQQDQKAAPTPAKGKARGAGGKGRWKDTGIALASSFRRLRCLAGCTDASGCVDSTTLSEAWEGVEGAVRRRCLLDEVL 732
            VG+GGGSLDGGEQTVVAKMLL SAQMAAAEAKTGRR AAGYQLGKEAKQEVREAVAELAEACLTHLPNLLAKYQSDDAKLALLAELPTCIPSEALASLVSGSGKGAFSDLVSR+KDAFLMSNSPLVMDAAA+SLGWFLNADHAKRAEVQAVAQGMVEELFAKVS LC QDQKA  TPA+GKA+GAGGKGRWKDTGI LA+SFRRLRCLAGCTD SGCVD TTLSEAWEGV+GAVRRRCLL EVL
Sbjct:  467 VGDGGGSLDGGEQTVVAKMLLLSAQMAAAEAKTGRRTAAGYQLGKEAKQEVREAVAELAEACLTHLPNLLAKYQSDDAKLALLAELPTCIPSEALASLVSGSGKGAFSDLVSRMKDAFLMSNSPLVMDAAAASLGWFLNADHAKRAEVQAVAQGMVEELFAKVSTLCLQDQKA--TPARGKAKGAGGKGRWKDTGIGLANSFRRLRCLAGCTDVSGCVDDTTLSEAWEGVQGAVRRRCLLAEVL 708
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12704.2063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ11_ECTSI7.390e-14495.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7R4_9PHAE7.310e-13593.03SCD domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12704contigE-fasciculatus_F_contig12704:694..3585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score440.3
Seed ortholog evalue6e-121
Seed eggNOG ortholog2880.D7FZ11
Preferred nameIRR1
KEGG koko:K06671
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007129,GO:0007135,GO:0008150,GO:0008278,GO:0008608,GO:0009987,GO:0010789,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030892,GO:0030893,GO:0030999,GO:0031619,GO:0031974,GO:0031981,GO:0032991,GO:0034990,GO:0034991,GO:0043060,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045144,GO:0048285,GO:0050000,GO:0051177,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0061982,GO:0061983,GO:0070013,GO:0070192,GO:0071840,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047
EggNOG free text desc.chromosome segregation
EggNOG OGsCOG5537@1,KOG2011@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_001130.1
Exons5
Model size735
Cds size735
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12704.2063.1prot_E-fasciculatus_F_contig12704.2063.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12704 694..3585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927778.073043-CDS-E-fasciculatus_F_contig12704:693..8401622927778.073043-CDS-E-fasciculatus_F_contig12704:693..840Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12704 694..840 +
1695995690.0184755-CDS-E-fasciculatus_F_contig12704:693..8401695995690.0184755-CDS-E-fasciculatus_F_contig12704:693..840Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12704 694..840 +
1622927778.3455436-CDS-E-fasciculatus_F_contig12704:1677..17521622927778.3455436-CDS-E-fasciculatus_F_contig12704:1677..1752Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12704 1678..1752 +
1695995690.028404-CDS-E-fasciculatus_F_contig12704:1677..17521695995690.028404-CDS-E-fasciculatus_F_contig12704:1677..1752Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12704 1678..1752 +
1622927778.4294283-CDS-E-fasciculatus_F_contig12704:2269..24881622927778.4294283-CDS-E-fasciculatus_F_contig12704:2269..2488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12704 2270..2488 +
1695995690.0405242-CDS-E-fasciculatus_F_contig12704:2269..24881695995690.0405242-CDS-E-fasciculatus_F_contig12704:2269..2488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12704 2270..2488 +
1622927778.4414787-CDS-E-fasciculatus_F_contig12704:3054..31821622927778.4414787-CDS-E-fasciculatus_F_contig12704:3054..3182Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12704 3055..3182 +
1695995690.0543885-CDS-E-fasciculatus_F_contig12704:3054..31821695995690.0543885-CDS-E-fasciculatus_F_contig12704:3054..3182Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12704 3055..3182 +
1622927778.4618626-CDS-E-fasciculatus_F_contig12704:3419..35851622927778.4618626-CDS-E-fasciculatus_F_contig12704:3419..3585Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12704 3420..3585 +
1695995690.062989-CDS-E-fasciculatus_F_contig12704:3419..35851695995690.062989-CDS-E-fasciculatus_F_contig12704:3419..3585Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12704 3420..3585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12704.2063.1

>prot_E-fasciculatus_F_contig12704.2063.1 ID=prot_E-fasciculatus_F_contig12704.2063.1|Name=mRNA_E-fasciculatus_F_contig12704.2063.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=245bp
VGEGGGSLDGGEQTVVAKMLLRSAQMAAAEAKTGRRAAAGYQLGKEAKQE
VREAVAELAEACLTHLPNLLAKYQSDDAKLALLAELPTCIPSEALASLVS
GSGKGAFSDLVSRVKDAFLMSNSPLVMDAAASSLGWFLNADHAKRAEVQA
VAQGMVEELFAKVSALCQQDQKAAPTPAKGKARGAGGKGRWKDTGIALAS
SFRRLRCLAGCTDASGCVDSTTLSEAWEGVEGAVRRRCLLDEVL*
back to top

mRNA from alignment at E-fasciculatus_F_contig12704:694..3585+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12704.2063.1 ID=mRNA_E-fasciculatus_F_contig12704.2063.1|Name=mRNA_E-fasciculatus_F_contig12704.2063.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2892bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12704:694..3585+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGGTGAGGGCGGCGGGTCGCTCGACGGCGGGGAGCAGACGGTCGTGGC
GAAGATGCTGCTGCGCTCGGCCCAGATGGCTGCCGCTGAGGCAAAGACGG
GCAGGAGGGCTGCGGCGGGATACCAGCTGGGCAAGGAAGCGAAGCAGGTT
AGAGAGCCAAGGGTTGTTTTTTGTGTACCAGCTGGGCATAGCGAAGCAGC
TTGGAGATTCAAGGGCGCTGTTGTTAGCTTGTTAATTTTTTACCAGTTGG
GCAAGGAAACAAAGCAGGTTCCAGAACCAAGGGTGCTCTTCTGGCAAGAG
GTTGAGGTAGCCGAGCAAGGGTAAGGGTAAGGGTGAGGTTAGGATGAAGA
AAGCGGAGCACATTTTGGTGTGTGGGGTCGGTGTCTAGATGCGGTGGACG
CGCCGACCACGTTTCTGTGTTGATCAGCGGTGTATGTACCATCCTTACGA
TATCCTTGTGTGCTTTGTTGGTCGGGGGTGTTGGAACTCCCACATGCGTG
CTCATGCCTTATGCCCAGATTCTGTTCTGGGCGGCACGCTTCACTGTTAC
CACTTACACCGGGCAAGTCGTTGCGGTCAACGCCTTTGCTGCTGGCCTCC
CTTTCCGAAGCTGCACCAGCGGCAGCACCAGCACCAGCACCAGCACCAGC
GGTGCTTTGTCATCGACTTGACCAACCCACCATCCAACTTCGATTGTCAT
TGTCTACCCCCCCCGTCCTTCCTTCCTTCCTTCCTTCTGTCACCCCCGGT
GCCGATGCTGGCTGGCTGGTTGTGTGGTACTTGGCTTGGCGGTGGGTGCT
ATTGGTGTCGGGACGATCGATCGGACGATCGGACGATCGATCCGGTGTCG
TGTCTGTCGTGTTGGTGTTGTTGGTGTCGGGACGATCGATCGGACGACTA
CCAAACGTCACTTATACCGCATCTACGATCCGGCGTCTGTCGTGTTGGTG
CCACTACCGTGTCCGTGTCCGTGTCTGTGTGCAGGAAGTACGTGAGGCGG
TCGCGGAGCTGGCGGAGGCGTGTCTGACCCACCTGCCCAACCTCTTGGCC
AAGTACCAGGTGACCGACGTTGATTGGTTTTGGTTCGATGCGATATCGTA
CGTAGCATTCTTGCGTAAGGGCGACTCTCGGATCGATTGATTGGTTCGAT
TCGTATCGTTTCGTATGTATGCGAAAGGAATTTCGCCCGCAGCCTTTCGA
GTTGGCTTGCATTGTTTTGTGTTGTACTGTATTGGTTACGCCGCCACCTT
GTGGTGATGGAATTGTCGCTGTCGTTCCTGGTTTTTCGTGTCTCGAATGT
CCCCCTTTGCGTGCGAGCTCCACCTAACATGTACAAGTAGGAGCGGCTAT
TGTTCTATGTTGTATGAGAGGGTCGAGACAAGCGCAAAACCGTCGAATCA
ATTACACTGTACGTGTATTTCTCATGCATACATGCATAGTGTAGCCGGGA
CAAGTCAGTCTTCCTCCCTTTTACCCGCACCGTCTTCTCAGTAGTCCCTC
TTACACCGTAGCCGGTACAACTGTACGTAAATCTTCATCACACCCTCCCC
CCCCCCCCCCCCCCGAACAACATCAGTCGGATGACGCCAAGCTGGCCTTG
CTCGCGGAGCTGCCGACGTGCATCCCCTCCGAAGCCCTGGCGTCTCTGGT
ATCCGGCTCCGGGAAGGGCGCGTTCTCGGACCTGGTCTCCCGCGTGAAGG
ACGCCTTCCTCATGTCCAACTCCCCCCTGGTCATGGACGCCGCTGCCTCG
AGCCTGGGTTGGTTTCTGAACGCTGACCACGCCAAGAGAGCCGAGGTACG
GTAGTGACTGACGTTTTGTAGCGGATTCCTTTTTTTCTTTTCTGGTGTTT
GTTTTTTGTTCGTCATACATAGCGGCTTGTTTCTTAGCGCTGACCACGCA
GAGAGAGCCCAGATACAATAGTGACATTTTTGCGTTTCCTTTGGTTGTTT
CTCATCCGGTCATTTGTTTTTGTCCGTCACAGAGTCATTGTCGTTGATAG
TCTTGTTAACATCGCGCAGCAGCTTCAGTCACTTTTGGCTCTCTCTTAGC
TCCCCGCCAAATCACTCAGCCATTTCTTTACCCCCATCCTATCAACTCAG
CGATCTTGAAACCCCCATCAAGCCAACTCAGCCTTCTTCTAATACCCTAT
TCCGTCAGTCACCTCTTCAACCCCCATTTACTCAACGGTAGCCCCACACC
CTTCATCACCCAGTCCTCTCTGTACCCCGCGCTGGTATCATATCTCCTCC
GCACGCTTTCTCGTTTCGACTCAACGAGAAAACGCCAACAACATCTACTC
TCCTGCAATATGTACCATCAATACCATCAACACCATATATCGACGCCCTC
CGCAAACACAGGTTCAGGCTGTGGCGCAGGGGATGGTAGAAGAGCTCTTC
GCCAAGGTCAGCGCCCTCTGCCAGCAAGACCAGAAGGCCGCCCCCACCCC
CGCCAAAGGAAAAGCGAGGGGGGCCGGGGGCAAAGGAAGGTGAAATAAAT
TACTGTATTTACTTCTGTATGTGCATCCGCAGACAACAGAGTCAAACAAA
TCTCAGAAAAACGGAGTAATTCGGAATAGTTTATGGCTTCATCTGACCAA
CCGGTTTGCGTTTTTTTCTTTTTTGTCCAACTGCATCTCCTCCCACATGT
ATACAGTCAAGGAATAGTTGGCATTGGAGTGCTATGTGTCTGACCAACCG
GCGCGTTTTTTTTCTTTTTCCTTTAGGTGGAAGGACACCGGCATCGCCCT
GGCGAGCTCTTTCCGACGCCTCCGCTGCCTGGCGGGCTGCACGGACGCCA
GCGGCTGCGTCGACAGCACCACCCTGTCCGAAGCGTGGGAGGGGGTCGAA
GGGGCTGTCCGGCGCCGCTGCCTTCTCGACGAGGTATTGTAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12704:694..3585+

>mRNA_E-fasciculatus_F_contig12704.2063.1 ID=mRNA_E-fasciculatus_F_contig12704.2063.1|Name=mRNA_E-fasciculatus_F_contig12704.2063.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1470bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12704:694..3585+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGGTGAGGGCGGCGGGTCGCTCGACGGCGGGGAGCAGACGGTCGTGGC
GAAGATGCTGCTGCGCTCGGCCCAGATGGCTGCCGCTGAGGCAAAGACGG
GCAGGAGGGCTGCGGCGGGATACCAGCTGGGCAAGGAAGCGAAGCAGGTG
GGTGAGGGCGGCGGGTCGCTCGACGGCGGGGAGCAGACGGTCGTGGCGAA
GATGCTGCTGCGCTCGGCCCAGATGGCTGCCGCTGAGGCAAAGACGGGCA
GGAGGGCTGCGGCGGGATACCAGCTGGGCAAGGAAGCGAAGCAGGAAGTA
CGTGAGGCGGTCGCGGAGCTGGCGGAGGCGTGTCTGACCCACCTGCCCAA
CCTCTTGGCCAAGTACCAGGAAGTACGTGAGGCGGTCGCGGAGCTGGCGG
AGGCGTGTCTGACCCACCTGCCCAACCTCTTGGCCAAGTACCAGTCGGAT
GACGCCAAGCTGGCCTTGCTCGCGGAGCTGCCGACGTGCATCCCCTCCGA
AGCCCTGGCGTCTCTGGTATCCGGCTCCGGGAAGGGCGCGTTCTCGGACC
TGGTCTCCCGCGTGAAGGACGCCTTCCTCATGTCCAACTCCCCCCTGGTC
ATGGACGCCGCTGCCTCGAGCCTGGGTTGGTTTCTGAACGCTGACCACGC
CAAGAGAGCCGAGTCGGATGACGCCAAGCTGGCCTTGCTCGCGGAGCTGC
CGACGTGCATCCCCTCCGAAGCCCTGGCGTCTCTGGTATCCGGCTCCGGG
AAGGGCGCGTTCTCGGACCTGGTCTCCCGCGTGAAGGACGCCTTCCTCAT
GTCCAACTCCCCCCTGGTCATGGACGCCGCTGCCTCGAGCCTGGGTTGGT
TTCTGAACGCTGACCACGCCAAGAGAGCCGAGGTTCAGGCTGTGGCGCAG
GGGATGGTAGAAGAGCTCTTCGCCAAGGTCAGCGCCCTCTGCCAGCAAGA
CCAGAAGGCCGCCCCCACCCCCGCCAAAGGAAAAGCGAGGGGGGCCGGGG
GCAAAGGAAGGTTCAGGCTGTGGCGCAGGGGATGGTAGAAGAGCTCTTCG
CCAAGGTCAGCGCCCTCTGCCAGCAAGACCAGAAGGCCGCCCCCACCCCC
GCCAAAGGAAAAGCGAGGGGGGCCGGGGGCAAAGGAAGGTGGAAGGACAC
CGGCATCGCCCTGGCGAGCTCTTTCCGACGCCTCCGCTGCCTGGCGGGCT
GCACGGACGCCAGCGGCTGCGTCGACAGCACCACCCTGTCCGAAGCGTGG
GAGGGGGTCGAAGGGGCTGTCCGGCGCCGCTGCCTTCTCGACGAGGTATT
GTAGGTGGAAGGACACCGGCATCGCCCTGGCGAGCTCTTTCCGACGCCTC
CGCTGCCTGGCGGGCTGCACGGACGCCAGCGGCTGCGTCGACAGCACCAC
CCTGTCCGAAGCGTGGGAGGGGGTCGAAGGGGCTGTCCGGCGCCGCTGCC
TTCTCGACGAGGTATTGTAG
back to top