mRNA_E-fasciculatus_F_contig127.2060.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig127.2060.1
Unique NamemRNA_E-fasciculatus_F_contig127.2060.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig127.2060.1 vs. uniprot
Match: D7FM02_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM02_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 2.350e-92
Identity = 144/156 (92.31%), Postives = 148/156 (94.87%), Query Frame = 1 
Query:    1 CAPDQNWMCYPAYCLGAWCPCCVGDTRELVAEKYNLPIVSWDPDEFGWCFVKMIGARLMCFCSVCLMPCLHIAQMRAEVAFRKHGKPTVCPXXXXXXXXXXXXGETTYKEEDLDYPRDDGVKRPHAIEEAXXXXEGGKRVELTPEKEVEVVLDYPR 468
            C   +NWMCYPAYCLGA CPCCVGDTRELVAEKYNLPIVSWDPDEFGWCFVKMIGARLMCFCSVCLMPCLHI+QMRAEVAFRKHGK TVCPXXXXXXXXXXXXGETTYKEE+LDYPRDDGVKRPHAIE  XXXX GGKRVELTPEKEV+VVLDYPR
Sbjct:   84 CYLRENWMCYPAYCLGASCPCCVGDTRELVAEKYNLPIVSWDPDEFGWCFVKMIGARLMCFCSVCLMPCLHISQMRAEVAFRKHGKATVCPXXXXXXXXXXXXGETTYKEEELDYPRDDGVKRPHAIEXXXXXXXGGKRVELTPEKEVKVVLDYPR 239
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig127.2060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM02_ECTSI2.350e-9292.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig127contigE-fasciculatus_F_contig127:38362..38832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_000370.1
Exons1
Model size471
Cds size450
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927777.324671-CDS-E-fasciculatus_F_contig127:38361..388111622927777.324671-CDS-E-fasciculatus_F_contig127:38361..38811Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig127 38362..38811 -
1695995689.7890718-CDS-E-fasciculatus_F_contig127:38361..388111695995689.7890718-CDS-E-fasciculatus_F_contig127:38361..38811Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig127 38362..38811 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927777.3382645-UTR-E-fasciculatus_F_contig127:38811..388321622927777.3382645-UTR-E-fasciculatus_F_contig127:38811..38832Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig127 38812..38832 -
1695995689.8001783-UTR-E-fasciculatus_F_contig127:38811..388321695995689.8001783-UTR-E-fasciculatus_F_contig127:38811..38832Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig127 38812..38832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig127.2060.1prot_E-fasciculatus_F_contig127.2060.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig127 38362..38811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig127.2060.1

>prot_E-fasciculatus_F_contig127.2060.1 ID=prot_E-fasciculatus_F_contig127.2060.1|Name=mRNA_E-fasciculatus_F_contig127.2060.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=150bp
MCYPAYCLGAWCPCCVGDTRELVAEKYNLPIVSWDPDEFGWCFVKMIGAR
LMCFCSVCLMPCLHIAQMRAEVAFRKHGKPTVCPCCCCGCGGGKGPGETT
YKEEDLDYPRDDGVKRPHAIEEADYPREGGKRVELTPEKEVEVVLDYPR*
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mRNA from alignment at E-fasciculatus_F_contig127:38362..38832-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig127.2060.1 ID=mRNA_E-fasciculatus_F_contig127.2060.1|Name=mRNA_E-fasciculatus_F_contig127.2060.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=471bp|location=Sequence derived from alignment at E-fasciculatus_F_contig127:38362..38832- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCGCCCCGGACCAGAACTGGATGTGCTACCCAGCGTACTGCCTTGGAGC
GTGGTGCCCGTGCTGCGTGGGCGACACGCGCGAACTGGTGGCGGAGAAAT
ATAACCTGCCCATCGTTTCGTGGGACCCCGACGAGTTCGGCTGGTGCTTC
GTCAAGATGATCGGCGCGAGGCTCATGTGCTTCTGCAGCGTGTGCCTGAT
GCCGTGCCTTCACATCGCCCAGATGAGGGCGGAGGTAGCGTTCCGGAAGC
ACGGGAAGCCGACTGTGTGTCCGTGCTGCTGCTGCGGGTGCGGCGGGGGC
AAAGGCCCTGGCGAAACCACGTACAAGGAGGAGGATCTGGACTACCCACG
GGACGATGGGGTGAAGCGCCCGCACGCCATTGAAGAGGCCGACTACCCAC
GGGAAGGCGGCAAGAGGGTCGAACTCACGCCCGAGAAAGAGGTTGAGGTC
GTGTTGGATTACCCGCGTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig127:38362..38832-

>mRNA_E-fasciculatus_F_contig127.2060.1 ID=mRNA_E-fasciculatus_F_contig127.2060.1|Name=mRNA_E-fasciculatus_F_contig127.2060.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=900bp|location=Sequence derived from alignment at E-fasciculatus_F_contig127:38362..38832- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGCTACCCAGCGTACTGCCTTGGAGCGTGGTGCCCGTGCTGCGTGGG
CGACACGCGCGAACTGGTGGCGGAGAAATATAACCTGCCCATCGTTTCGT
GGGACCCCGACGAGTTCGGCTGGTGCTTCGTCAAGATGATCGGCGCGAGG
CTCATGTGCTTCTGCAGCGTGTGCCTGATGCCGTGCCTTCACATCGCCCA
GATGAGGGCGGAGGTAGCGTTCCGGAAGCACGGGAAGCCGACTGTGTGTC
CGTGCTGCTGCTGCGGGTGCGGCGGGGGCAAAGGCCCTGGCGAAACCACG
TACAAGGAGGAGGATCTGGACTACCCACGGGACGATGGGGTGAAGCGCCC
GCACGCCATTGAAGAGGCCGACTACCCACGGGAAGGCGGCAAGAGGGTCG
AACTCACGCCCGAGAAAGAGGTTGAGGTCGTGTTGGATTACCCGCGTTGA
ATGTGCTACCCAGCGTACTGCCTTGGAGCGTGGTGCCCGTGCTGCGTGGG
CGACACGCGCGAACTGGTGGCGGAGAAATATAACCTGCCCATCGTTTCGT
GGGACCCCGACGAGTTCGGCTGGTGCTTCGTCAAGATGATCGGCGCGAGG
CTCATGTGCTTCTGCAGCGTGTGCCTGATGCCGTGCCTTCACATCGCCCA
GATGAGGGCGGAGGTAGCGTTCCGGAAGCACGGGAAGCCGACTGTGTGTC
CGTGCTGCTGCTGCGGGTGCGGCGGGGGCAAAGGCCCTGGCGAAACCACG
TACAAGGAGGAGGATCTGGACTACCCACGGGACGATGGGGTGAAGCGCCC
GCACGCCATTGAAGAGGCCGACTACCCACGGGAAGGCGGCAAGAGGGTCG
AACTCACGCCCGAGAAAGAGGTTGAGGTCGTGTTGGATTACCCGCGTTGA
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