mRNA_E-fasciculatus_F_contig12663.2035.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12663.2035.1
Unique NamemRNA_E-fasciculatus_F_contig12663.2035.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12663.2035.1 vs. uniprot
Match: D7FSA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA5_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 5.220e-31
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 VKIARLYLLSDILHNSSAPVKKASSYRTHLQKGLPEIFDGLNEAFRGVEGRMTAKQVEDR 180
            VKIARLYLLSDILHNSSAPVKKASSYRTHLQKGLPEIFDGLNEAFRGVEGRMTAKQVEDR
Sbjct:  774 VKIARLYLLSDILHNSSAPVKKASSYRTHLQKGLPEIFDGLNEAFRGVEGRMTAKQVEDR 833
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BLAST of mRNA_E-fasciculatus_F_contig12663.2035.1 vs. uniprot
Match: A0A6H5JCR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR2_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 5.220e-31
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 VKIARLYLLSDILHNSSAPVKKASSYRTHLQKGLPEIFDGLNEAFRGVEGRMTAKQVEDR 180
            VKIARLYLLSDILHNSSAPVKKASSYRTHLQKGLPEIFDGLNEAFRGVEGRMTAKQVEDR
Sbjct:  693 VKIARLYLLSDILHNSSAPVKKASSYRTHLQKGLPEIFDGLNEAFRGVEGRMTAKQVEDR 752
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BLAST of mRNA_E-fasciculatus_F_contig12663.2035.1 vs. uniprot
Match: A0A7S2WJA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJA8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.070e-16
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 VKIARLYLLSDILHNSSAPVKKASSYRTHLQKGLPEIFDGLNEAFRGVE--GRMTAKQVEDR 180
            VK+ARLYLLSDILHNSSAPV+ AS+YRT LQ  LP+IF+ LN  FR VE  GRM+A+ +E++
Sbjct:  583 VKLARLYLLSDILHNSSAPVQHASTYRTLLQACLPQIFEHLNRIFRDVERLGRMSARSLEEK 644
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BLAST of mRNA_E-fasciculatus_F_contig12663.2035.1 vs. uniprot
Match: A0A7S2WJ81_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJ81_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.080e-16
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 VKIARLYLLSDILHNSSAPVKKASSYRTHLQKGLPEIFDGLNEAFRGVE--GRMTAKQVEDR 180
            VK+ARLYLLSDILHNSSAPV+ AS+YRT LQ  LP+IF+ LN  FR VE  GRM+A+ +E++
Sbjct:  583 VKLARLYLLSDILHNSSAPVQHASTYRTLLQACLPQIFEHLNRIFRDVERLGRMSARSLEEK 644
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BLAST of mRNA_E-fasciculatus_F_contig12663.2035.1 vs. uniprot
Match: A0A118JTZ7_CYNCS (CID domain-containing protein n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A118JTZ7_CYNCS)

HSP 1 Score: 79.7 bits (195), Expect = 7.230e-16
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    4 KIARLYLLSDILHNSSAPVKKASSYRTHLQKGLPEIFDGLNEAFRGVEGRMTAKQVEDRSVLVFE 198
            K+ARL L+SDILHNSSAPVK ASSYRT  +  LP+I +  N+ +RG+ GR+TA+ +++R + V +
Sbjct:  497 KVARLMLVSDILHNSSAPVKNASSYRTKFEAALPDILESFNDLYRGITGRITAEALKERVLKVLQ 561
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BLAST of mRNA_E-fasciculatus_F_contig12663.2035.1 vs. uniprot
Match: A0A836CAC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAC0_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.870e-16
Identity = 34/60 (56.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 VKIARLYLLSDILHNSSAPVKKASSYRTHLQKGLPEIFDGLNEAFRGVEGRMTAKQVEDR 180
            V +ARLYL+SD+LHNS+APV+ A+S+RT LQ  LP++F+ L  A RG+ GR+TA+Q+ +R
Sbjct:  601 VIVARLYLVSDVLHNSAAPVRNATSFRTLLQSCLPQVFEALGTALRGIAGRLTARQLRER 660
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BLAST of mRNA_E-fasciculatus_F_contig12663.2035.1 vs. uniprot
Match: A0A0U9HP58_KLENI (RNA recognition motif (RRM)-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HP58_KLENI)

HSP 1 Score: 79.3 bits (194), Expect = 9.890e-16
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    4 KIARLYLLSDILHNSSAPVKKASSYRTHLQKGLPEIFDGLNEAFRGVEGRMTAKQVEDR 180
            K+ARL L+SDILHNSSAPVK AS+YRT LQ  LP+IF+  NE  R V GRMTA+ ++ R
Sbjct:  494 KVARLMLVSDILHNSSAPVKNASAYRTLLQARLPDIFESFNETLRNVTGRMTAEALKAR 552
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BLAST of mRNA_E-fasciculatus_F_contig12663.2035.1 vs. uniprot
Match: A0A392PU32_9FABA (U2 snRNP-associated SURP motif-containing protein-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392PU32_9FABA)

HSP 1 Score: 74.3 bits (181), Expect = 1.060e-15
Identity = 33/65 (50.77%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    4 KIARLYLLSDILHNSSAPVKKASSYRTHLQKGLPEIFDGLNEAFRGVEGRMTAKQVEDRSVLVFE 198
            KIARL L+SDILHNSSAPV+ AS+YRT  +  LP+I +  N+ +R + GR+TA+ +++R + V +
Sbjct:   31 KIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQ 95
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BLAST of mRNA_E-fasciculatus_F_contig12663.2035.1 vs. uniprot
Match: A0A2J6LMV1_LACSA (Uncharacterized protein n=2 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6LMV1_LACSA)

HSP 1 Score: 78.6 bits (192), Expect = 1.840e-15
Identity = 34/65 (52.31%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    4 KIARLYLLSDILHNSSAPVKKASSYRTHLQKGLPEIFDGLNEAFRGVEGRMTAKQVEDRSVLVFE 198
            K+ARL L+SDILHNSSAPVK AS+YRT  +  LP+I +  N+ +RG+ GR+TA+ +++R + V +
Sbjct:  496 KVARLMLVSDILHNSSAPVKNASAYRTKFEANLPDILESFNDLYRGITGRITAEALKERVLKVLQ 560
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BLAST of mRNA_E-fasciculatus_F_contig12663.2035.1 vs. uniprot
Match: UPI001CC3BA1D (protein RRC1-like isoform X1 n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC3BA1D)

HSP 1 Score: 78.6 bits (192), Expect = 1.840e-15
Identity = 34/65 (52.31%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    4 KIARLYLLSDILHNSSAPVKKASSYRTHLQKGLPEIFDGLNEAFRGVEGRMTAKQVEDRSVLVFE 198
            K+ARL L+SDILHNSSAPVK AS+YRT  +  LP+I +  N+ +RG+ GR+TA+ +++R + V +
Sbjct:  501 KVARLMLVSDILHNSSAPVKNASAYRTKFEAALPDIMESFNDLYRGITGRITAEALKERVLKVLQ 565
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12663.2035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSA5_ECTSI5.220e-31100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCR2_9PHAE5.220e-31100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2WJA8_9STRA2.070e-1666.13Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2WJ81_9STRA2.080e-1666.13Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A118JTZ7_CYNCS7.230e-1653.85CID domain-containing protein n=1 Tax=Cynara cardu... [more]
A0A836CAC0_9STRA9.870e-1656.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0U9HP58_KLENI9.890e-1664.41RNA recognition motif (RRM)-containing protein n=1... [more]
A0A392PU32_9FABA1.060e-1550.77U2 snRNP-associated SURP motif-containing protein-... [more]
A0A2J6LMV1_LACSA1.840e-1552.31Uncharacterized protein n=2 Tax=Lactuca sativa Tax... [more]
UPI001CC3BA1D1.840e-1552.31protein RRC1-like isoform X1 n=2 Tax=Telopea speci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12663contigE-fasciculatus_F_contig12663:2877..3788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2.2e-25
Seed eggNOG ortholog2880.D7FSA5
Preferred nameU2SURP
KEGG koko:K02878,ko:K12842
KEGG Pathwayko03010,ko03040,map03010,map03040
KEGG ModuleM00178
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005685,GO:0005686,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0017069,GO:0030532,GO:0030619,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035613,GO:0035614,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.U2 snRNP-associated SURP
EggNOG OGsKOG0151@1,KOG0151@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927774.1086354-CDS-E-fasciculatus_F_contig12663:2876..29661622927774.1086354-CDS-E-fasciculatus_F_contig12663:2876..2966Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12663 2877..2966 -
1695995688.091332-CDS-E-fasciculatus_F_contig12663:2876..29661695995688.091332-CDS-E-fasciculatus_F_contig12663:2876..2966Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12663 2877..2966 -
1622927774.1247685-CDS-E-fasciculatus_F_contig12663:3680..37881622927774.1247685-CDS-E-fasciculatus_F_contig12663:3680..3788Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12663 3681..3788 -
1695995688.1048415-CDS-E-fasciculatus_F_contig12663:3680..37881695995688.1048415-CDS-E-fasciculatus_F_contig12663:3680..3788Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12663 3681..3788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12663.2035.1prot_E-fasciculatus_F_contig12663.2035.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12663 2877..3788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12663.2035.1

>prot_E-fasciculatus_F_contig12663.2035.1 ID=prot_E-fasciculatus_F_contig12663.2035.1|Name=mRNA_E-fasciculatus_F_contig12663.2035.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=66bp
VKIARLYLLSDILHNSSAPVKKASSYRTHLQKGLPEIFDGLNEAFRGVEG
RMTAKQVEDRSVLVFE
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mRNA from alignment at E-fasciculatus_F_contig12663:2877..3788-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12663.2035.1 ID=mRNA_E-fasciculatus_F_contig12663.2035.1|Name=mRNA_E-fasciculatus_F_contig12663.2035.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=912bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12663:2877..3788- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGAAAATCGCGAGGCTGTACCTGCTGTCGGACATCCTGCACAACAGCTC
GGCCCCCGTGAAGAAGGCGTCCTCGTACAGAACACACTTACAGAAGGGGC
TGCCGGAGGTATGAGAGAGACGCAACGCACACGTAGCGCGGTCGGTGCTT
ATAATTATGATACACATAGAGACAGGCAGAGACAGAGACAGATAGAGAAG
AGAGAGACACAGAGAGAGGAGAAAGGGAAGGCAAGGAGAGAGACAGACAG
AGAGAAGAGAGACACACAGAGAGAAGGAAGGAAGGAAGGACGTGCAACAC
GACACGACCTTATTGTCTTTCTTGTCTTCGGTAGGTATACTATCTAGATA
TGCCCTTCGTATGTGACTGCTGTGGTGGCCTTTGTGTATGAGAGTTAAGA
GTCGTGTGTTGTGCAGGCTGTTTGTGTGATTTCGGCCCCCCGTAAGAGAT
GCTTGTATGCGTAGTGGTCTAGATGGTACCATATGATGATTTCTATATAG
AACAGCTGTAAAAGCGACCGCATCCGTTATCGTTGCTCGCAATATTCCTT
GTGTACCTTTTTCATGTAGTCGTGTTGCGCTTCGACACTTGAGGACAACG
AAAACAACACCGGGGAAACATAAAAAGGGCAGAGTAGACATTGTGTCACG
CACTACAAAGCTCTTGCGGTTGTCTCGTATACGTTCGATCAGCCGCCACG
AGACAATGACCGGCCGGGCGACTGCAAACAAACGAATCAAATAGCCGAAA
CGTGTTGTGTTTCTTGCCGTTTTTTTCGTTTTTTTCGCACGTTTGTTGAA
TTGATGAACCTGTCTTGTCTAGATTTTTGACGGGCTGAATGAAGCGTTCC
GGGGCGTGGAGGGGCGCATGACTGCCAAGCAGGTGGAAGACAGGTCAGTT
TTAGTTTTTGAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12663:2877..3788-

>mRNA_E-fasciculatus_F_contig12663.2035.1 ID=mRNA_E-fasciculatus_F_contig12663.2035.1|Name=mRNA_E-fasciculatus_F_contig12663.2035.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12663:2877..3788- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGAAAATCGCGAGGCTGTACCTGCTGTCGGACATCCTGCACAACAGCTC
GGCCCCCGTGAAGAAGGCGTCCTCGTACAGAACACACTTACAGAAGGGGC
TGCCGGAGGTGAAAATCGCGAGGCTGTACCTGCTGTCGGACATCCTGCAC
AACAGCTCGGCCCCCGTGAAGAAGGCGTCCTCGTACAGAACACACTTACA
GAAGGGGCTGCCGGAGATTTTTGACGGGCTGAATGAAGCGTTCCGGGGCG
TGGAGGGGCGCATGACTGCCAAGCAGGTGGAAGACAGGTCAGTTTTAGTT
TTTGAAATTTTTGACGGGCTGAATGAAGCGTTCCGGGGCGTGGAGGGGCG
CATGACTGCCAAGCAGGTGGAAGACAGGTCAGTTTTAGTTTTTGAA
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