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Homology
BLAST of mRNA_E-fasciculatus_F_contig10210.201.1 vs. uniprot
Match: D7G3V5_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3V5_ECTSI) HSP 1 Score: 138 bits (348), Expect = 5.650e-34 Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 2 Query: 71 RCWNEPFMVDIRYDASTEQVSFHRCEPDYADGLTELEREHPDVVEGPKCDLAWRVVLHEHGALA 262
RCW+EPFMVDIRYDASTEQVSFHRCEPDYADGLTEL+REHPDVVEGPKCDLAWR VLHEHGALA
Sbjct: 421 RCWSEPFMVDIRYDASTEQVSFHRCEPDYADGLTELQREHPDVVEGPKCDLAWRGVLHEHGALA 484
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 120.9 |
| Seed ortholog evalue | 1.9e-25 |
| Seed eggNOG ortholog | 2880.D7G3V5 |
| Preferred name | TOR4A |
| GOs | GO:0002576,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006887,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0030141,GO:0031091,GO:0031093,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046903,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0097708,GO:0099503 |
| EggNOG free text desc. | chaperone cofactor-dependent protein refolding |
| EggNOG OGs | KOG2170@1,KOG2170@2759 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | no signal peptide or anchor |
| Exons | 2 |
| Model size | 874 |
| Cds size | 174 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10210.201.1 >prot_E-fasciculatus_F_contig10210.201.1 ID=prot_E-fasciculatus_F_contig10210.201.1|Name=mRNA_E-fasciculatus_F_contig10210.201.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=58bp
MVDIRYDASTEQVSFHRCEPDYADGLTELEREHPDVVEGPKCDLAWRVVL
HEHGALA* back to topmRNA from alignment at E-fasciculatus_F_contig10210:1262..3136+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10210.201.1 ID=mRNA_E-fasciculatus_F_contig10210.201.1|Name=mRNA_E-fasciculatus_F_contig10210.201.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1875bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10210:1262..3136+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGACGACCAGGGCAAGGGGGCTATGGCGGCAGCAGTAGCAGTAGTAGGG
GCTATGGCGATGGCGACGGTCGGTGCTGGAACGAGCCTTTCATGGTGGAC
ATCCGGTACGACGCCTCCACAGAACAGGTACGTACGTATGCCTCGTTTTT
GTGCGGTGTGGTTGTCTTGATATGATGCTGCCCGTGTTTGTCGCTCGCTC
CAAGGCCGATGGTGAGAAGGAGAAGGAGAAGGTCGAACAAACAACTTAGA
CGAAACAACGTTTGCTCAGAAATTCAGAAGTCAGATGGCGGCATCGACCC
CTGGTTGCTTTGCTACCCACGAACTACGCGCACTTTGTACGTTGTACGTG
CAACAGAGTGACGATGGTATTTTTCCACCGCCATCCCTTCTTTTTTGTTT
TGTTTGTGGCGTTGTCGCCCGTGCACCGGCACATGCGTACCGCAGCGATG
CACGCATCACGCGCGTGGTGTGTGATCAACCGCGTTGACCTCTTGACCAA
TGAACAGCCGTCTCAGTGCGACTAAAACGGTCATGATGTGGGGTGCTGTG
ATGGGGGGGGGGGGTTGGGGGGGGGGGGGGGAGTCACAGAGGGGCCGAAG
TAGGGTTATCTCCGGGGTGGAAGCCGGAAACGGCATCAGACGAAGAACAT
GCACGTGCGTGCATGCTTGTTATTAGCATCGACCGCGCTGTCCGGCCGGC
CAATGAGGAGACTCCAGTTTCAGTCCGGCTTAAATCAAAAGACCAGGATC
CGATCTGGGACCCTGCAATACCCGTGTGTTTTTTCTTACTTGTGTTCGAC
CGCGCTGACCACTGAAAAGACGATCGGTGTTTTAGCGGGATAACAAAAAC
ACAAACACGCTTCCTAATCACTAAGGGTTATACCAACGGGGGGGGGCGCA
GGAGTTGGAAGACAGCAGTGTCCTGTTTCTGAAGTACAGGGAGAGGACTC
AAAATCCTATCAGGCGGCAGTGCTGCTCATTCTCCCATGCTATTACAATG
GCATCAGTTAATTGTTAGCATCGACCGCGCTAACCGTCTGACCATTGAAA
ATACCGGTACTACGTCAGTCTCAGTGCGGTTGAAAACACTGCTTGTGTGT
GCGTTGACCCACCTACCTCCCTCGCCAGGTGTCTTTCCACCGGTGTGAAC
CGGACTACGCCGACGGCCTGACGGAGCTGGAGCGGGAGCACCCGGACGTG
GTGGAGGGGCCCAAGTGTGACCTGGCCTGGAGAGTGGTATTGCACGAGCA
CGGGGCGCTCGCTTAAAACGTGCCTGCCCTCGCCTCCTTCTCTTCTCTTC
CGCTTCTGACGTCACGTCGTGTGTAGGCTTTTAGGGTTCAAATGCGGTCC
TTCTTGTTGATTCATGTGTTTGTGGGTGGCTGGTGAGATTGTCAAGTGCT
TCGTACATGCATGAGGGGGTTGCCGTCCTCTTGCTGCGATGGTGTTTGCT
GGTTTTGGTGTTGTTGTTGATGTTGTCGTGGTGGTAGTGGTGGTGTTGGT
TGTTGTTGTTTGATGCGTGATCATGCCCAAGAGGGGACAAGGAAGGACGG
CAGGGGAATAAAAACGCGTCGCAGCAGAGAGAGGATTTGGCGTGATGGGT
CGCTCGAAAAAATTAGAAGCGCGCTCTGGGCAGCGTGATTGCACCGTCAT
TGCCCCGCACGCCTCAGCATTGTCTACTTGCCCGGCAATACCTCGCCTGC
TCCCCATAACAAAGCACTAGCTTCCGATCAGTAGGTGGGGCCGCTGGCTG
GACCGAGTTGTAGAATTTGCCGGCGTGAATTTGAGAGCTGTTACCAACGC
CATCGGTAGCATTCGCCCGAAATGGCGCCGTCTGGGTTGCAGTTTTTTTT
TTTTATGCCAGGCGGTAGGAAGACG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10210:1262..3136+ >mRNA_E-fasciculatus_F_contig10210.201.1 ID=mRNA_E-fasciculatus_F_contig10210.201.1|Name=mRNA_E-fasciculatus_F_contig10210.201.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=348bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10210:1262..3136+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGGACATCCGGTACGACGCCTCCACAGAACAGATGGTGGACATCCG
GTACGACGCCTCCACAGAACAGGTGTCTTTCCACCGGTGTGAACCGGACT
ACGCCGACGGCCTGACGGAGCTGGAGCGGGAGCACCCGGACGTGGTGGAG
GGGCCCAAGTGTGACCTGGCCTGGAGAGTGGTATTGCACGAGCACGGGGC
GCTCGCTTAAGTGTCTTTCCACCGGTGTGAACCGGACTACGCCGACGGCC
TGACGGAGCTGGAGCGGGAGCACCCGGACGTGGTGGAGGGGCCCAAGTGT
GACCTGGCCTGGAGAGTGGTATTGCACGAGCACGGGGCGCTCGCTTAA back to top
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