mRNA_E-fasciculatus_F_contig10210.201.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10210.201.1
Unique NamemRNA_E-fasciculatus_F_contig10210.201.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10210.201.1 vs. uniprot
Match: D7G3V5_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3V5_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 5.650e-34
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 2 
Query:   71 RCWNEPFMVDIRYDASTEQVSFHRCEPDYADGLTELEREHPDVVEGPKCDLAWRVVLHEHGALA 262
            RCW+EPFMVDIRYDASTEQVSFHRCEPDYADGLTEL+REHPDVVEGPKCDLAWR VLHEHGALA
Sbjct:  421 RCWSEPFMVDIRYDASTEQVSFHRCEPDYADGLTELQREHPDVVEGPKCDLAWRGVLHEHGALA 484
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10210.201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3V5_ECTSI5.650e-3495.31AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10210contigE-fasciculatus_F_contig10210:1262..3136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue1.9e-25
Seed eggNOG ortholog2880.D7G3V5
Preferred nameTOR4A
GOsGO:0002576,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006887,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0030141,GO:0031091,GO:0031093,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046903,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0097708,GO:0099503
EggNOG free text desc.chaperone cofactor-dependent protein refolding
EggNOG OGsKOG2170@1,KOG2170@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size874
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10210.201.1prot_E-fasciculatus_F_contig10210.201.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10210 1353..2527 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.3986554-UTR-E-fasciculatus_F_contig10210:1261..13521622927524.3986554-UTR-E-fasciculatus_F_contig10210:1261..1352Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10210 1262..1352 +
1695995577.806471-UTR-E-fasciculatus_F_contig10210:1261..13521695995577.806471-UTR-E-fasciculatus_F_contig10210:1261..1352Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10210 1262..1352 +
1622927524.4389887-UTR-E-fasciculatus_F_contig10210:2527..31361622927524.4389887-UTR-E-fasciculatus_F_contig10210:2527..3136Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10210 2528..3136 +
1695995577.8326068-UTR-E-fasciculatus_F_contig10210:2527..31361695995577.8326068-UTR-E-fasciculatus_F_contig10210:2527..3136Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10210 2528..3136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.4124372-CDS-E-fasciculatus_F_contig10210:1352..13881622927524.4124372-CDS-E-fasciculatus_F_contig10210:1352..1388Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10210 1353..1388 +
1695995577.8163915-CDS-E-fasciculatus_F_contig10210:1352..13881695995577.8163915-CDS-E-fasciculatus_F_contig10210:1352..1388Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10210 1353..1388 +
1622927524.425674-CDS-E-fasciculatus_F_contig10210:2389..25271622927524.425674-CDS-E-fasciculatus_F_contig10210:2389..2527Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10210 2390..2527 +
1695995577.8245003-CDS-E-fasciculatus_F_contig10210:2389..25271695995577.8245003-CDS-E-fasciculatus_F_contig10210:2389..2527Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10210 2390..2527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10210.201.1

>prot_E-fasciculatus_F_contig10210.201.1 ID=prot_E-fasciculatus_F_contig10210.201.1|Name=mRNA_E-fasciculatus_F_contig10210.201.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=58bp
MVDIRYDASTEQVSFHRCEPDYADGLTELEREHPDVVEGPKCDLAWRVVL
HEHGALA*
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mRNA from alignment at E-fasciculatus_F_contig10210:1262..3136+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10210.201.1 ID=mRNA_E-fasciculatus_F_contig10210.201.1|Name=mRNA_E-fasciculatus_F_contig10210.201.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1875bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10210:1262..3136+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGACGACCAGGGCAAGGGGGCTATGGCGGCAGCAGTAGCAGTAGTAGGG
GCTATGGCGATGGCGACGGTCGGTGCTGGAACGAGCCTTTCATGGTGGAC
ATCCGGTACGACGCCTCCACAGAACAGGTACGTACGTATGCCTCGTTTTT
GTGCGGTGTGGTTGTCTTGATATGATGCTGCCCGTGTTTGTCGCTCGCTC
CAAGGCCGATGGTGAGAAGGAGAAGGAGAAGGTCGAACAAACAACTTAGA
CGAAACAACGTTTGCTCAGAAATTCAGAAGTCAGATGGCGGCATCGACCC
CTGGTTGCTTTGCTACCCACGAACTACGCGCACTTTGTACGTTGTACGTG
CAACAGAGTGACGATGGTATTTTTCCACCGCCATCCCTTCTTTTTTGTTT
TGTTTGTGGCGTTGTCGCCCGTGCACCGGCACATGCGTACCGCAGCGATG
CACGCATCACGCGCGTGGTGTGTGATCAACCGCGTTGACCTCTTGACCAA
TGAACAGCCGTCTCAGTGCGACTAAAACGGTCATGATGTGGGGTGCTGTG
ATGGGGGGGGGGGGTTGGGGGGGGGGGGGGGAGTCACAGAGGGGCCGAAG
TAGGGTTATCTCCGGGGTGGAAGCCGGAAACGGCATCAGACGAAGAACAT
GCACGTGCGTGCATGCTTGTTATTAGCATCGACCGCGCTGTCCGGCCGGC
CAATGAGGAGACTCCAGTTTCAGTCCGGCTTAAATCAAAAGACCAGGATC
CGATCTGGGACCCTGCAATACCCGTGTGTTTTTTCTTACTTGTGTTCGAC
CGCGCTGACCACTGAAAAGACGATCGGTGTTTTAGCGGGATAACAAAAAC
ACAAACACGCTTCCTAATCACTAAGGGTTATACCAACGGGGGGGGGCGCA
GGAGTTGGAAGACAGCAGTGTCCTGTTTCTGAAGTACAGGGAGAGGACTC
AAAATCCTATCAGGCGGCAGTGCTGCTCATTCTCCCATGCTATTACAATG
GCATCAGTTAATTGTTAGCATCGACCGCGCTAACCGTCTGACCATTGAAA
ATACCGGTACTACGTCAGTCTCAGTGCGGTTGAAAACACTGCTTGTGTGT
GCGTTGACCCACCTACCTCCCTCGCCAGGTGTCTTTCCACCGGTGTGAAC
CGGACTACGCCGACGGCCTGACGGAGCTGGAGCGGGAGCACCCGGACGTG
GTGGAGGGGCCCAAGTGTGACCTGGCCTGGAGAGTGGTATTGCACGAGCA
CGGGGCGCTCGCTTAAAACGTGCCTGCCCTCGCCTCCTTCTCTTCTCTTC
CGCTTCTGACGTCACGTCGTGTGTAGGCTTTTAGGGTTCAAATGCGGTCC
TTCTTGTTGATTCATGTGTTTGTGGGTGGCTGGTGAGATTGTCAAGTGCT
TCGTACATGCATGAGGGGGTTGCCGTCCTCTTGCTGCGATGGTGTTTGCT
GGTTTTGGTGTTGTTGTTGATGTTGTCGTGGTGGTAGTGGTGGTGTTGGT
TGTTGTTGTTTGATGCGTGATCATGCCCAAGAGGGGACAAGGAAGGACGG
CAGGGGAATAAAAACGCGTCGCAGCAGAGAGAGGATTTGGCGTGATGGGT
CGCTCGAAAAAATTAGAAGCGCGCTCTGGGCAGCGTGATTGCACCGTCAT
TGCCCCGCACGCCTCAGCATTGTCTACTTGCCCGGCAATACCTCGCCTGC
TCCCCATAACAAAGCACTAGCTTCCGATCAGTAGGTGGGGCCGCTGGCTG
GACCGAGTTGTAGAATTTGCCGGCGTGAATTTGAGAGCTGTTACCAACGC
CATCGGTAGCATTCGCCCGAAATGGCGCCGTCTGGGTTGCAGTTTTTTTT
TTTTATGCCAGGCGGTAGGAAGACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10210:1262..3136+

>mRNA_E-fasciculatus_F_contig10210.201.1 ID=mRNA_E-fasciculatus_F_contig10210.201.1|Name=mRNA_E-fasciculatus_F_contig10210.201.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=348bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10210:1262..3136+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGGACATCCGGTACGACGCCTCCACAGAACAGATGGTGGACATCCG
GTACGACGCCTCCACAGAACAGGTGTCTTTCCACCGGTGTGAACCGGACT
ACGCCGACGGCCTGACGGAGCTGGAGCGGGAGCACCCGGACGTGGTGGAG
GGGCCCAAGTGTGACCTGGCCTGGAGAGTGGTATTGCACGAGCACGGGGC
GCTCGCTTAAGTGTCTTTCCACCGGTGTGAACCGGACTACGCCGACGGCC
TGACGGAGCTGGAGCGGGAGCACCCGGACGTGGTGGAGGGGCCCAAGTGT
GACCTGGCCTGGAGAGTGGTATTGCACGAGCACGGGGCGCTCGCTTAA
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