mRNA_E-fasciculatus_F_contig1261.2004.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1261.2004.1
Unique NamemRNA_E-fasciculatus_F_contig1261.2004.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1261.2004.1 vs. uniprot
Match: A0A6H5JYJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ7_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 1.750e-86
Identity = 121/127 (95.28%), Postives = 124/127 (97.64%), Query Frame = 1
Query:    4 QPFPTMYWLSCPSLKAAVSQLENQGLILEWERRLQADPAIMADMEAAHKSYAEERWSLLSAEDADTIKRQGWEKSFANGVAGIVQPRHIKCLHTHLAHFLATGRNVVGKWTQEALDAGRHLPVAEDG 384
            QPFPTMYWLSCPSLKAAVSQLENQGLILEWERRLQADP IMADMEAAHKSYAEERWSLLSAED DTIKRQGWEKSF+NGVAGIVQPRHIKCLHTH AHFLATGRNVVGKWTQEALDAG+HLPVA+DG
Sbjct:   80 QPFPTMYWLSCPSLKAAVSQLENQGLILEWERRLQADPGIMADMEAAHKSYAEERWSLLSAEDVDTIKRQGWEKSFSNGVAGIVQPRHIKCLHTHFAHFLATGRNVVGKWTQEALDAGKHLPVAKDG 206          
BLAST of mRNA_E-fasciculatus_F_contig1261.2004.1 vs. uniprot
Match: A0A7S3YI93_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YI93_HETAK)

HSP 1 Score: 129 bits (323), Expect = 8.390e-35
Identity = 61/116 (52.59%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    4 QPFPTMYWLSCPSLKAAVSQLENQGLILEWERRLQADPAIMADMEAAHKSYAEERWSLLSAEDADTIKRQGWEKSFAN-GVAGIVQPRHIKCLHTHLAHFLATGRNVVGKWTQEAL 348
            QPFPT+YWL C  LKA VS+LE  G I E+++RL  +   +  ME AH+ Y E+RWSLLS  + D I+ +GW ++F N GV G+     +KCLH HLAH LATGRN VG W  E L
Sbjct:  104 QPFPTIYWLCCQELKARVSELERVGKIEEFQQRLNENAEYIKQMEEAHRQYEEKRWSLLSEAELDKIRARGWTRAFENVGVGGLRHFAKVKCLHMHLAHHLATGRNPVGAWVHEEL 219          
BLAST of mRNA_E-fasciculatus_F_contig1261.2004.1 vs. uniprot
Match: A0A6G0NZP4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6G0NZP4_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.970e-34
Identity = 58/118 (49.15%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    4 QPFPTMYWLSCPSLKAAVSQLENQGLILEWERRLQADPAIMADMEAAHKSYAEERWSLLSAEDADTIKRQGWEKSFAN-GVAGIVQPRHIKCLHTHLAHFLATGRNVVGKWTQEALDA 354
            +PFPT+YWLS   LKA VS LE+Q L+L  +RRL AD      M+ +H+ YAE+RW +++  D + +K + WE    + G+AGI +  ++KCLHTH AH+LATG N+VG+W QE LD+
Sbjct:   90 EPFPTIYWLSSTELKARVSALEDQQLVLALQRRLDADDPAKQKMKQSHREYAEQRWLMMTPRDLELVKGRRWEFFLRDVGIAGIREYTNVKCLHTHYAHYLATGNNLVGEWVQELLDS 207          
BLAST of mRNA_E-fasciculatus_F_contig1261.2004.1 vs. uniprot
Match: A0A3R7HVX3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HVX3_9STRA)

HSP 1 Score: 127 bits (319), Expect = 2.510e-34
Identity = 57/118 (48.31%), Postives = 81/118 (68.64%), Query Frame = 1
Query:    4 QPFPTMYWLSCPSLKAAVSQLENQGLILEWERRLQADPAIMADMEAAHKSYAEERWSLLSAEDADTIKRQGWEKSFAN-GVAGIVQPRHIKCLHTHLAHFLATGRNVVGKWTQEALDA 354
            +PFPT+YWL+   LKA VS LE++  ++E +RRL+AD A    M   H+ YAE+RW +L+  D   +K +GWE    + G+AGI    ++KCLHTH AH+LATG N++G+W QE LD+
Sbjct:   86 EPFPTIYWLASTELKARVSTLEDEQYVMELQRRLEADEASKEKMAQNHREYAEQRWRMLTEHDLGVVKGRGWEFVLRDVGIAGIRDFTNVKCLHTHYAHYLATGNNLIGEWVQELLDS 203          
BLAST of mRNA_E-fasciculatus_F_contig1261.2004.1 vs. uniprot
Match: G4ZX89_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZX89_PHYSP)

HSP 1 Score: 126 bits (317), Expect = 4.890e-34
Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    4 QPFPTMYWLSCPSLKAAVSQLENQGLILEWERRLQADPAIMADMEAAHKSYAEERWSLLSAEDADTIKRQGWEKSFAN-GVAGIVQPRHIKCLHTHLAHFLATGRNVVGKWTQEALD 351
            +PFPT+YWL+   LKA VS LE+Q  +L  + RL AD A    M+ +H+ YAE+RW +++A D + +K + WE    + G+AGI +  ++KCLHTH AH+LATG N+VG+W QE LD
Sbjct:   85 EPFPTIYWLASTELKARVSALEDQQFVLTLQHRLDADEAAKQRMKESHREYAEQRWRMMTAHDLELVKGRRWEFFLRDVGIAGIREYTNVKCLHTHYAHYLATGNNLVGEWVQELLD 201          
BLAST of mRNA_E-fasciculatus_F_contig1261.2004.1 vs. uniprot
Match: W2QG84_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2QG84_PHYPN)

HSP 1 Score: 122 bits (307), Expect = 1.170e-32
Identity = 55/118 (46.61%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    4 QPFPTMYWLSCPSLKAAVSQLENQGLILEWERRLQADPAIMADMEAAHKSYAEERWSLLSAEDADTIKRQGWEKSFAN-GVAGIVQPRHIKCLHTHLAHFLATGRNVVGKWTQEALDA 354
            +PFPT+YWL+   LKA VS LE+Q  +L  + RL  D A    M  +H+ YAE+RW++++A D + +K + WE    + G+AGI    ++KCLHTH AH+LATG N +G+W QE LD+
Sbjct:   81 EPFPTIYWLASTELKARVSTLEDQQYVLSLQHRLDTDEAAKEKMAQSHREYAEQRWNMMTAHDLELVKGRCWEFVLRDVGIAGIRDFTNVKCLHTHYAHYLATGNNQIGEWVQELLDS 198          
BLAST of mRNA_E-fasciculatus_F_contig1261.2004.1 vs. uniprot
Match: H3HCG6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCG6_PHYRM)

HSP 1 Score: 122 bits (305), Expect = 1.700e-32
Identity = 55/118 (46.61%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    4 QPFPTMYWLSCPSLKAAVSQLENQGLILEWERRLQADPAIMADMEAAHKSYAEERWSLLSAEDADTIKRQGWEKSFAN-GVAGIVQPRHIKCLHTHLAHFLATGRNVVGKWTQEALDA 354
            +PFPT+YWL+   LKA VS LE+Q  +L  + RL AD A    M  +H+ YAE+RW +++  D + +K + WE    + G+AGI +  ++KCLHTH AH+LATG N+VG+W QE L++
Sbjct:   62 EPFPTIYWLASTELKARVSTLEDQQYVLTLQHRLDADEAAKEKMAQSHREYAEQRWRMMTPHDRELVKGRRWEFFLRDVGIAGIREFTNVKCLHTHYAHYLATGNNLVGEWVQELLNS 179          
BLAST of mRNA_E-fasciculatus_F_contig1261.2004.1 vs. uniprot
Match: D0NKV2_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NKV2_PHYIT)

HSP 1 Score: 120 bits (302), Expect = 6.640e-32
Identity = 54/117 (46.15%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    4 QPFPTMYWLSCPSLKAAVSQLENQGLILEWERRLQADPAIMADMEAAHKSYAEERWSLLSAEDADTIKRQGWEKSFAN-GVAGIVQPRHIKCLHTHLAHFLATGRNVVGKWTQEALD 351
            +PFPT+YWL+   LKA VS LE+Q  +L  + RL  D A    M  +H+ YAE+RW++++  D + +K + WE    + G+AGI    ++KCLHTH AH+LATG N +G+W QE LD
Sbjct:   81 EPFPTIYWLASAELKARVSTLEDQQFVLSLQHRLDTDQAAKERMAQSHREYAEQRWNMMTPHDLELVKGRRWEFVLRDVGIAGIRDFTNVKCLHTHYAHYLATGNNQIGEWVQELLD 197          
BLAST of mRNA_E-fasciculatus_F_contig1261.2004.1 vs. uniprot
Match: A0A0P1A8J7_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8J7_PLAHL)

HSP 1 Score: 120 bits (302), Expect = 9.110e-32
Identity = 55/117 (47.01%), Postives = 80/117 (68.38%), Query Frame = 1
Query:    4 QPFPTMYWLSCPSLKAAVSQLENQGLILEWERRLQADPAIMADMEAAHKSYAEERWSLLSAEDADTIKRQGWEKSFAN-GVAGIVQPRHIKCLHTHLAHFLATGRNVVGKWTQEALD 351
            +PFPT+YWL+   LKA VS LE+Q  +L  ++RL AD +    M  +H+ YAE+RW +++A D   I+ + WE    + G+AGI +  ++KCLHTH AH+LATG N++G+W QE LD
Sbjct:   84 EPFPTIYWLASTELKAKVSILEDQQYVLMLQQRLDADQSARERMVQSHREYAEQRWHMMTAHDLKLIQHRRWEFVLRDVGIAGIREFTNVKCLHTHYAHYLATGNNLIGEWVQELLD 200          
BLAST of mRNA_E-fasciculatus_F_contig1261.2004.1 vs. uniprot
Match: A0A2P4Y3U7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3U7_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.480e-31
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    4 QPFPTMYWLSCPSLKAAVSQLENQGLILEWERRLQADPAIMADMEAAHKSYAEERWSLLSAEDADTIKRQGWEKSFAN-GVAGIVQPRHIKCLHTHLAHFLATGRNVVGKWTQEALDA 354
            +PFPT+YWL+   LKA VS LE+Q  +L  + RL  D A    M  +H+ YAE+RW +++  D + +K + WE    + G+AGI    ++KCLHTH AH+LATG N +G+W QE LD+
Sbjct:   79 EPFPTIYWLASTELKARVSTLEDQQYVLSLQHRLDTDEAAKEKMAQSHREYAEQRWRMMTQHDLNLVKGRHWEFVLRDVGIAGIRDFTNVKCLHTHYAHYLATGNNQIGEWVQELLDS 196          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1261.2004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYJ7_9PHAE1.750e-8695.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3YI93_HETAK8.390e-3552.59Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6G0NZP4_9STRA1.970e-3449.15Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A3R7HVX3_9STRA2.510e-3448.31Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
G4ZX89_PHYSP4.890e-3448.72Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
W2QG84_PHYPN1.170e-3246.61Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
H3HCG6_PHYRM1.700e-3246.61Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
D0NKV2_PHYIT6.640e-3246.15Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A0P1A8J7_PLAHL9.110e-3247.01Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A2P4Y3U7_9STRA1.480e-3145.76Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1261contigE-fasciculatus_F_contig1261:15547..16373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue1.7e-23
Seed eggNOG ortholog67593.Physo155412
EggNOG free text desc.Protein of unknown function (DUF501)
EggNOG OGs2S2X1@2759,3Q9XN@4776,COG1507@1
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF501
Ec32 orthologEc-07_006680.1
Exons2
Model size387
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1261.2004.1prot_E-fasciculatus_F_contig1261.2004.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1261 15547..16355 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927769.935704-CDS-E-fasciculatus_F_contig1261:15546..158251622927769.935704-CDS-E-fasciculatus_F_contig1261:15546..15825Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1261 15547..15825 -
1695995686.353714-CDS-E-fasciculatus_F_contig1261:15546..158251695995686.353714-CDS-E-fasciculatus_F_contig1261:15546..15825Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1261 15547..15825 -
1622927769.954027-CDS-E-fasciculatus_F_contig1261:16265..163551622927769.954027-CDS-E-fasciculatus_F_contig1261:16265..16355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1261 16266..16355 -
1695995686.3639603-CDS-E-fasciculatus_F_contig1261:16265..163551695995686.3639603-CDS-E-fasciculatus_F_contig1261:16265..16355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1261 16266..16355 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927769.9706535-UTR-E-fasciculatus_F_contig1261:16355..163731622927769.9706535-UTR-E-fasciculatus_F_contig1261:16355..16373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1261 16356..16373 -
1695995686.3722405-UTR-E-fasciculatus_F_contig1261:16355..163731695995686.3722405-UTR-E-fasciculatus_F_contig1261:16355..16373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1261 16356..16373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1261.2004.1

>prot_E-fasciculatus_F_contig1261.2004.1 ID=prot_E-fasciculatus_F_contig1261.2004.1|Name=mRNA_E-fasciculatus_F_contig1261.2004.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=123bp
MYWLSCPSLKAAVSQLENQGLILEWERRLQADPAIMADMEAAHKSYAEER
WSLLSAEDADTIKRQGWEKSFANGVAGIVQPRHIKCLHTHLAHFLATGRN
VVGKWTQEALDAGRHLPVAEDG*
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mRNA from alignment at E-fasciculatus_F_contig1261:15547..16373-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1261.2004.1 ID=mRNA_E-fasciculatus_F_contig1261.2004.1|Name=mRNA_E-fasciculatus_F_contig1261.2004.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=827bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1261:15547..16373- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCAGCCGTTCCCGACGATGTACTGGCTCTCGTGCCCATCTCTGAAGGC GGCTGTATCGCAGCTGGAGAACCAAGGCCTCATCCTTGAATGGGAGCGAA GATTGCAGGTGCTATGAATTTTTTGCCATGTTGCCTGGCGGGCGGGACGA GATAGTGCAGTATGAGTGTCGTCTACAAGTTAAGCCTGTATGCACAATGT GCTCGTTGCATACAGTTTCGTTGTGCCTAATTCCGCGCAGTAGTCTCCGC ACGTGTTTCTAAAGCAACATACAGAGCAACGTATGTATTCGGCCGTGTTG GGGTTAGGATTTTGGTTCGGGTCTGCGTTCCCCCTGTCTGGTCTTTCGCA ATAAACTTACTTTCTTTTCGTAGGCAGTCGCACCCGTGGTGCTTTCGGCT TTGCCGAGAGCGTTGCCTTGCCAGTGCCTGTGCGCTCACGGAAAGCGTGG TTGTTTTTGCAGCTGTGTTTTTGTTTTGTGAGGAACACTACGTGAATCCA CCAACAAGACCGATCTCCAACCGCCGTTCTGTCCTGCTTGCCGTACAGGC TGACCCAGCAATCATGGCAGACATGGAAGCTGCCCATAAGAGCTATGCCG AGGAACGGTGGTCTTTGCTTTCCGCAGAAGACGCGGATACCATCAAGCGA CAAGGGTGGGAGAAGTCTTTTGCCAACGGGGTGGCAGGCATAGTCCAGCC CCGCCACATCAAGTGCCTCCACACGCACTTGGCGCATTTTCTGGCAACGG GCCGGAACGTAGTCGGGAAGTGGACGCAAGAGGCTCTGGATGCTGGAAGA CACTTGCCGGTGGCAGAAGACGGCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1261:15547..16373-

>mRNA_E-fasciculatus_F_contig1261.2004.1 ID=mRNA_E-fasciculatus_F_contig1261.2004.1|Name=mRNA_E-fasciculatus_F_contig1261.2004.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1261:15547..16373- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACTGGCTCTCGTGCCCATCTCTGAAGGCGGCTGTATCGCAGCTGGA
GAACCAAGGCCTCATCCTTGAATGGGAGCGAAGATTGCAGATGTACTGGC
TCTCGTGCCCATCTCTGAAGGCGGCTGTATCGCAGCTGGAGAACCAAGGC
CTCATCCTTGAATGGGAGCGAAGATTGCAGGCTGACCCAGCAATCATGGC
AGACATGGAAGCTGCCCATAAGAGCTATGCCGAGGAACGGTGGTCTTTGC
TTTCCGCAGAAGACGCGGATACCATCAAGCGACAAGGGTGGGAGAAGTCT
TTTGCCAACGGGGTGGCAGGCATAGTCCAGCCCCGCCACATCAAGTGCCT
CCACACGCACTTGGCGCATTTTCTGGCAACGGGCCGGAACGTAGTCGGGA
AGTGGACGCAAGAGGCTCTGGATGCTGGAAGACACTTGCCGGTGGCAGAA
GACGGCTGAGCTGACCCAGCAATCATGGCAGACATGGAAGCTGCCCATAA
GAGCTATGCCGAGGAACGGTGGTCTTTGCTTTCCGCAGAAGACGCGGATA
CCATCAAGCGACAAGGGTGGGAGAAGTCTTTTGCCAACGGGGTGGCAGGC
ATAGTCCAGCCCCGCCACATCAAGTGCCTCCACACGCACTTGGCGCATTT
TCTGGCAACGGGCCGGAACGTAGTCGGGAAGTGGACGCAAGAGGCTCTGG
ATGCTGGAAGACACTTGCCGGTGGCAGAAGACGGCTGA
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