mRNA_E-fasciculatus_F_contig1255.1955.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1255.1955.1
Unique NamemRNA_E-fasciculatus_F_contig1255.1955.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1255.1955.1 vs. uniprot
Match: D8LQ56_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE), Vesicle-associated membrane protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ56_ECTSI)

HSP 1 Score: 335 bits (860), Expect = 7.770e-110
Identity = 188/196 (95.92%), Postives = 191/196 (97.45%), Query Frame = 1 
Query:    1 QLMSNPDTFVEPRKRYSVEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLTKVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAAVQASQTFDKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQNRSSALRRQMRCKAIKMWLLLAMXXXXXXXXXXVPIAMHAKNNSD 588
            +LMSNPDTFVEPRKRYSVEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLTKVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAAVQ     DKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQNRSSALRRQMRCKAIKMWLLLA+XXXXXXXXXXVPIA+HAKNNSD
Sbjct:   35 ELMSNPDTFVEPRKRYSVEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLTKVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAAVQ-----DKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQNRSSALRRQMRCKAIKMWLLLALXXXXXXXXXXVPIALHAKNNSD 225
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BLAST of mRNA_E-fasciculatus_F_contig1255.1955.1 vs. uniprot
Match: A0A835YU71_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU71_9STRA)

HSP 1 Score: 224 bits (570), Expect = 5.130e-65
Identity = 119/215 (55.35%), Postives = 153/215 (71.16%), Query Frame = 1 
Query:    4 LMSNPDTFVEPRKRYSVEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLTKVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAAVQASQTFDKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVF-----------------------QNRSSALRRQMRCKAIKMWLLLAMXXXXXXXXXXVPIAMHAKN 579
            ++S+P+ FVEP +RY+ EG +  +HFVADDSNR+Y+ VTDK+YPAR+AF LL+E Q+KFLTKVG+KSL+AKE  LSRTM+SSF+D+C+KYDD++NVD++A+VQ      KVD VK  M++NI QMLANEE L+ IS NAENLNEQA+                         QNRS+ALRR MRCKA+KMW LLA           VP+AM++KN
Sbjct:   37 VISSPNVFVEPGRRYTNEGDVCCVHFVADDSNRVYTVVTDKQYPARVAFALLDEVQSKFLTKVGEKSLSAKEDTLSRTMRSSFADICLKYDDVKNVDKLASVQG-----KVDAVKTKMEENISQMLANEETLESISANAENLNEQARXXXXXXXXXXXXXXXXXXXXXXXXXQNRSTALRRNMRCKALKMWFLLAFVITIVLIIIIVPLAMYSKN 246
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BLAST of mRNA_E-fasciculatus_F_contig1255.1955.1 vs. uniprot
Match: A0A7S2XW80_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW80_9STRA)

HSP 1 Score: 131 bits (330), Expect = 5.100e-33
Identity = 64/117 (54.70%), Postives = 88/117 (75.21%), Query Frame = 1 
Query:   43 RYSVEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLTKVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAAVQASQTFDKVDVVKVTMQDNIQQMLANEE 393
            RYS EG  F++HFV D+ +R+Y  +T K+YP+R+AFTLLEE Q+KFL KVGD+SL+ KEGGL+ T K  F+++C +Y+D+   D++AAVQ      KVDVVK  M+DNI +ML N+E
Sbjct:    1 RYSTEGVEFTLHFVGDERHRLYCVITAKDYPSRVAFTLLEELQSKFLDKVGDRSLSVKEGGLNGTCKKMFTNICHRYEDVEGADKLAAVQG-----KVDVVKSIMEDNISKMLKNQE 112
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BLAST of mRNA_E-fasciculatus_F_contig1255.1955.1 vs. uniprot
Match: W7U318_9STRA (R-snare vamp72-family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U318_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.060e-24
Identity = 67/196 (34.18%), Postives = 107/196 (54.59%), Query Frame = 1 
Query:    1 QLMSNPDTFVEPRKRYSVEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLTKVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAAVQASQTFDKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQNRSSALRRQMRCKAIKMWLLLAMXXXXXXXXXXVPIAMHAKNNSD 588
            +++ +    V P   +S      S H ++D   RI+  ++++ YP R A   LEE Q  FL K G KSL  KE GL ++       LC KYD++  VD++AAV      +KVD VK+ +Q+N+Q  LAN   LD I + AE+L  QA +F+  ++ L++QM  K ++M +++ +          +PIA+ +K   D
Sbjct:   40 EVLKSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVM-----NKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRMKMVMGLAILAILLVIIIPIAVASKRMHD 230
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BLAST of mRNA_E-fasciculatus_F_contig1255.1955.1 vs. uniprot
Match: A0A7R9Z383_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z383_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.530e-24
Identity = 66/177 (37.29%), Postives = 101/177 (57.06%), Query Frame = 1 
Query:   52 VEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLTKVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAAVQASQTFDKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQNRSSALRRQMRCKAIKMWLLLAMXXXXXXXXXXVPIAMHAKNN 582
            V+  +  + + AD      + +T  +YP+R+A  +L E   ++  + G ++ +A    L++  K   S +C KYDD+ NVD+     AS    KV+ VKV MQDNI  ML N E+ + ++E ++ LNEQA VF+ +S+ LR+QMRCK +KM L+L            VP+ M AKNN
Sbjct:  123 VQSEVHQVVYGADTDGLCLAVITGLQYPSRVAIQMLVELYGQYSEQFGLQAKSATTNSLTKKSKPMLSTMCNKYDDLSNVDK-----ASSLIGKVEEVKVQMQDNIAAMLKNTEQAESLAERSDALNEQASVFKKKSTDLRKQMRCKNLKMTLILVFLIVGILAIILVPLIMKAKNN 294
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BLAST of mRNA_E-fasciculatus_F_contig1255.1955.1 vs. uniprot
Match: A0A6V2A733_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2A733_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.810e-22
Identity = 60/174 (34.48%), Postives = 100/174 (57.47%), Query Frame = 1 
Query:   52 VEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLTKVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAAVQASQTFDKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQNRSSALRRQMRCKAIKMWLLLAMXXXXXXXXXXVPIAMHA 573
            V+  +  + + AD      + +T ++YP+R+A  +L E   +F    G ++ +A    L++  K   S +C KY D+ NVD+     AS   DKVD VK++MQDNI  ML N E+ + +++ +E LNEQA VF+ +S+ L++QM+CK +KM ++L +          VP+ + A
Sbjct:  104 VQSTVHQVVYGADMDGLCLAVITGQKYPSRVAIQMLTELYGQFSQNFGLQAKSATTNSLTKKSKPMLSSICKKYSDLNNVDK-----ASALIDKVDQVKISMQDNIAVMLKNTEQAETLADKSEQLNEQATVFKKKSTDLKKQMKCKNLKMTIILGLLIFGILAVILVPLILKA 272
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BLAST of mRNA_E-fasciculatus_F_contig1255.1955.1 vs. uniprot
Match: A0A7S3Q7P0_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q7P0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 7.740e-22
Identity = 65/178 (36.52%), Postives = 95/178 (53.37%), Query Frame = 1 
Query:   52 VEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLTKVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAAVQASQTFDKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQNRSSALRRQMRCKAIKMWLLLAMXXXXXXXXXXVPIAMHAKNNS 585
            V+     + +  D      + VT   YP+R+A  +L E   ++ TK+GD+   A    L+R  K   +  C KYDD+ NVD+     AS    KVD VKV MQDNI  ML N E+ + IS+ A  LNE   VF+ +S+ L+RQM+CK +KM +++A+          +P+   AK  S
Sbjct:   82 VQSDAHQVVYGGDSDGLCLAVVTGLRYPSRVATQMLTECYGEYSTKMGDEIKDAATNSLNRKSKPILTKFCKKYDDVNNVDK-----ASALIGKVDGVKVQMQDNIATMLQNMEQTEAISDQANQLNEXXXVFKKQSTDLKRQMKCKNLKMTIIVAVLVLGILLVILLPLISKAKKAS 254
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BLAST of mRNA_E-fasciculatus_F_contig1255.1955.1 vs. uniprot
Match: A0A7S2KAE4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KAE4_9STRA)

HSP 1 Score: 105 bits (261), Expect = 8.540e-22
Identity = 56/177 (31.64%), Postives = 99/177 (55.93%), Query Frame = 1 
Query:   52 VEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLTKVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAAVQASQTFDKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQNRSSALRRQMRCKAIKMWLLLAMXXXXXXXXXXVPIAMHAKNN 582
            VE  +  + + AD   R  + +T  +YP+R+A  ++ E    F+ K G  +++A    L++       + C KYDD+ +VD+ ++V      +KV+ VK+ MQDNI  ML N E  +++ + +  LNEQA VF+  S+ L++ M+CK +KM +LL +          VP+ + A+++
Sbjct:   83 VESTVHQVTYGADGDGRCIAVITGLQYPSRVAVQMITELHKTFIEKFGLMAMSATTNSLTKKATPMLKEACKKYDDLSSVDKTSSV-----LEKVEGVKIQMQDNIAAMLVNTETAEELQDKSSQLNEQASVFKKNSTTLKKHMKCKNLKMTILLVLVVVGVLAIILVPLILRAQDD 254
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BLAST of mRNA_E-fasciculatus_F_contig1255.1955.1 vs. uniprot
Match: T0S118_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S118_SAPDV)

HSP 1 Score: 104 bits (260), Expect = 1.530e-21
Identity = 60/165 (36.36%), Postives = 92/165 (55.76%), Query Frame = 1 
Query:   28 VEPRKRYSVEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLTKVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAAVQASQTFDKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQNRSSALRRQMRCKAIKMWLLLAM 522
            V P  R++++      HF  D+   +Y  +T  +YP R+AF LL   Q +   K   K  T KEGGL +      S +   YDD   VD++A V A     +VD VK TMQ+NIQ +L+N E+++ + + + +L+EQAKVF+N   +L R M  K +K+ + L +
Sbjct:   55 VAPNSRHTLDCEPNKFHFTMDNDEIVYVAITAADYPVRLAFKLLAAVQEEMTGKHAAKLPTVKEGGLDKECAKGLSVIATTYDDRTKVDKLAEVMA-----QVDAVKSTMQENIQVVLSNTEKMEMVEQKSNDLSEQAKVFRNTGKSLSRAMWWKNVKLTIALGL 214
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BLAST of mRNA_E-fasciculatus_F_contig1255.1955.1 vs. uniprot
Match: B8C8V5_THAPS (Synaptobrevin (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8V5_THAPS)

HSP 1 Score: 99.4 bits (246), Expect = 9.030e-21
Identity = 59/151 (39.07%), Postives = 85/151 (56.29%), Query Frame = 1 
Query:  127 EYPARIAFTLLEEAQTKFLTKVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAAVQASQTFDKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQNRSSALRRQMRCKAIKMWLLLAMXXXXXXXXXXVPIAMHAKN 579
            +YP+R A  +L +  T +  +   ++ +A    L++  KS  S  C KYDD   VD+ +A+       KV+ VKV MQDNI  ML N E+ + ++E +  LNEQA VFQ +S  LR+QMRCK IKM ++L            VP+ + AKN
Sbjct:    1 KYPSRTAIQMLTDLYTPYSEQFSLQAKSATTNSLTKKSKSILSSYCKKYDDASKVDKASALNT-----KVEEVKVQMQDNIAAMLKNTEQAESLAERSNQLNEQANVFQKKSKDLRKQMRCKNIKMTIILVTLVVGVLVIILVPLIVRAKN 146
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1255.1955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ56_ECTSI7.770e-11095.92Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A835YU71_9STRA5.130e-6555.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XW80_9STRA5.100e-3354.70Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7U318_9STRA1.060e-2434.18R-snare vamp72-family n=2 Tax=Monodopsidaceae TaxI... [more]
A0A7R9Z383_9STRA1.530e-2437.29Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6V2A733_9STRA2.810e-2234.48Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S3Q7P0_9STRA7.740e-2236.52Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S2KAE4_9STRA8.540e-2231.64Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
T0S118_SAPDV1.530e-2136.36Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
B8C8V5_THAPS9.030e-2139.07Synaptobrevin (Fragment) n=1 Tax=Thalassiosira pse... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1255contigE-fasciculatus_F_contig1255:13316..17902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score332.4
Seed ortholog evalue1.4e-88
Seed eggNOG ortholog2880.D8LQ56
KEGG koko:K08511,ko:K08515
KEGG Pathwayko04130,map04130
GOsGO:0000149,GO:0000323,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006810,GO:0006887,GO:0006906,GO:0006996,GO:0007034,GO:0007041,GO:0008150,GO:0008333,GO:0009987,GO:0010008,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0030139,GO:0030659,GO:0030666,GO:0031090,GO:0031201,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032940,GO:0032991,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045335,GO:0046903,GO:0046907,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0071840,GO:0090174,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0098852
EggNOG free text desc.SNAP receptor activity
EggNOG OGsCOG5143@1,KOG0859@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE), Vesicle-associated membrane protein
Ec32 orthologEc-26_006070.1
Exons5
Model size1629
Cds size585
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927762.04072-UTR-E-fasciculatus_F_contig1255:13315..143531622927762.04072-UTR-E-fasciculatus_F_contig1255:13315..14353Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1255 13316..14353 -
1695995683.6343658-UTR-E-fasciculatus_F_contig1255:13315..143531695995683.6343658-UTR-E-fasciculatus_F_contig1255:13315..14353Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1255 13316..14353 -
1622927762.1232803-UTR-E-fasciculatus_F_contig1255:17896..179021622927762.1232803-UTR-E-fasciculatus_F_contig1255:17896..17902Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1255 17897..17902 -
1695995683.7025688-UTR-E-fasciculatus_F_contig1255:17896..179021695995683.7025688-UTR-E-fasciculatus_F_contig1255:17896..17902Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1255 17897..17902 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927762.0539496-CDS-E-fasciculatus_F_contig1255:14353..144431622927762.0539496-CDS-E-fasciculatus_F_contig1255:14353..14443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1255 14354..14443 -
1695995683.6468794-CDS-E-fasciculatus_F_contig1255:14353..144431695995683.6468794-CDS-E-fasciculatus_F_contig1255:14353..14443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1255 14354..14443 -
1622927762.0662327-CDS-E-fasciculatus_F_contig1255:14768..148311622927762.0662327-CDS-E-fasciculatus_F_contig1255:14768..14831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1255 14769..14831 -
1695995683.662592-CDS-E-fasciculatus_F_contig1255:14768..148311695995683.662592-CDS-E-fasciculatus_F_contig1255:14768..14831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1255 14769..14831 -
1622927762.0806496-CDS-E-fasciculatus_F_contig1255:15421..155321622927762.0806496-CDS-E-fasciculatus_F_contig1255:15421..15532Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1255 15422..15532 -
1695995683.673469-CDS-E-fasciculatus_F_contig1255:15421..155321695995683.673469-CDS-E-fasciculatus_F_contig1255:15421..15532Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1255 15422..15532 -
1622927762.0956614-CDS-E-fasciculatus_F_contig1255:16197..163351622927762.0956614-CDS-E-fasciculatus_F_contig1255:16197..16335Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1255 16198..16335 -
1695995683.6852095-CDS-E-fasciculatus_F_contig1255:16197..163351695995683.6852095-CDS-E-fasciculatus_F_contig1255:16197..16335Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1255 16198..16335 -
1622927762.1094139-CDS-E-fasciculatus_F_contig1255:17713..178961622927762.1094139-CDS-E-fasciculatus_F_contig1255:17713..17896Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1255 17714..17896 -
1695995683.6942172-CDS-E-fasciculatus_F_contig1255:17713..178961695995683.6942172-CDS-E-fasciculatus_F_contig1255:17713..17896Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1255 17714..17896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1255.1955.1prot_E-fasciculatus_F_contig1255.1955.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1255 14354..17896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1255.1955.1

>prot_E-fasciculatus_F_contig1255.1955.1 ID=prot_E-fasciculatus_F_contig1255.1955.1|Name=mRNA_E-fasciculatus_F_contig1255.1955.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=195bp
MSNPDTFVEPRKRYSVEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTL
LEEAQTKFLTKVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAA
VQASQTFDKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQN
RSSALRRQMRCKAIKMWLLLAMVVIILLIIIIVPIAMHAKNNSD*
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mRNA from alignment at E-fasciculatus_F_contig1255:13316..17902-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1255.1955.1 ID=mRNA_E-fasciculatus_F_contig1255.1955.1|Name=mRNA_E-fasciculatus_F_contig1255.1955.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4587bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1255:13316..17902- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCTTATGTCCAACCCGGACACGTTCGTGGAGCCTCGCAAGCGCTACTC
CGTGGAGGGCCGCATGTTCTCGATCCACTTTGTGGCGGACGACAGCAACC
GCATCTACAGCTGCGTGACGGACAAGGAGTACCCTGCGAGAATCGCCTTC
ACCCTGCTGGAGGAGGCACAGACCAAGTTCCTCACCAAGGTGTCGAATCG
TTTTCAGATGTACTTGTTCGGCAGCTGCCATCCCCACCCGAGCATTGCCG
TTTAGAGTACCCAACTTACCTCTGCGCATGTGCACAACCATTTGAAGGAG
TTATTTGTCTGGTGTGAGATACGAGGTTCACTAAGCCTCCCAGCAACACC
CGCTGCCGTGTCCACCTACTGTAGCGATGGCTATCCAACCGACAGCCACA
GGTGTGGCACCATTCGTTTCGAATCTCGACCACCAAGCGATGCAAGGGGG
AGCCGATCATAAAGAGCAAACAAAGTGGCAATCCGACGCCCATTCTCGTG
TTAATTGATTTCCGAAACTCCACAATTTGTTTCGTAGGCTGGCGCAAGCC
CAAGTCACCCACCACACGCCCGAAAAATGACTCTTTCGCTAGAAAACCGT
CGGAATTGCGCCCCAAGTACGCCCCGGTCGGTGCCACCCGGGCGCGGTAG
TTGACCCGCCTGTTCCCTGCCCGCGATCTGTTCCTTCCAAACCCATCCGA
ACGCGGAATAGAATCAGGTGAAAAGTCTGGTACAACAGTCAGTGCTAGAA
ATTGGCCTGTTGGTCCGGCGTGGCTTAGGAGGTTGGCCCGGCCCTGGTGT
CTAGGCGTATGCAGGACGCGGGGAACATGCCGGTGCCGCGAACAGGCCAG
ACTAGGGCGGTGCTGTCTAGCTGGCTGTGGCGGGCAGGCCGATTGTGCTG
GAGATTCCAGAGCCGGGCCTGGTCCACTAGCCTTTACACCTTAGCCGCGG
TCTTTAAGGCGGTCACCTAATGTTCCCTCCTATGCCGAGCTTCAACACTT
TCGTATTATCGTCCTGTTTCGATGAAATGAGGACCACTCTTTTTCTTCTC
GTCCTTTTGATCAGCTTCTTCGCTCGTAAATGAAATCAAACTTGTAACGT
GCCGCTAATCATGGTCTTGGATTCAACACAACGGCCACGGTTTTGGTCAC
AGTGCCCCAGAATCAGACAAAGTCGTAGGTCCCAAATTTCCGCGATTCTG
GTTGGTACCGAATGTGCTGTTTGCATTTATAGCATTTGAAGGTTGAAAAA
ATCTTGCTCACAAAGGAGGCCAGGTGCCGGAGCGAGATTCAGCGGGATTT
GACTAAATCTCACAGGCCCATGCTCGACACGTTTCGAAACGCATCGATGT
TTACGCATTCATGTACACATTGGTTGCGGTCGCTCATGACAGCCCATGTC
ACCCATTTAGTACACAGCCAACTGCCTCGTCTGATGCGACCATCGTTGGT
GCAACGACTGACTGCACGCTATCGGCTGCCTGCTGCGTGCTTGATTGACT
GCCATGATGGGATCGGGTGGGGTATGCGGTCGACGACGGGATGTCATGGC
ATGGCATGTGGGTAAAGGTGGGGGACAAGTCGCTCACGGCTAAGGAGGGA
GGCTTGTCGCGCACGATGAAGTCAAGCTTCTCGGACCTGTGCATCAAGTA
CGACGACATCCGTAACGTGGACCGGATGGCAGCTGTACAGGCAAGCCAAA
CCTTCGTAGATGGATGGTACTGTACTGTACTCGTTTTACCCCCCCCGCGG
TGTTGCCTCGGGGATAGAGGTAGTCTTTTTTGGCTGGGCCTGGAGTAGAG
TCAGGGACAACGGAGATACCAACGTTTGGGCGCAAGGTTCTTCGATGGAG
GAGATGCATTGCAAATATACATGAGGCAAGGGTTTTTTGTGCGTGAGCAC
CTGCGAAGGTGTTCTCCTCGCACTAGCGCAGCTTCGTTCGCCCATGCGAC
GCCACTGTTGAAGATTCAGCATCGACTTATGCTCGAAAATCTTCCTATCC
CTGCTGTAGCAGCTTCGCAGCCAGGTGCTGCAAAGATGCCCGGGATTCGC
TTGTTTATTTATTTATGTGTCAACCGCGTACAACTACTGTAGTCGACGGT
CCTGATTGCAGGTGTTTTCACTTACACCGAACAGGCAAGCATAGTATGTG
ACTACAACTGCACCCCCAGTTGCGAGCACATCTGGCTGCGGTACAAGTGC
ACGACAAGACGCGTGCAAGCCAAATTGCGTTCCACGTTTGTTCAGCTGCG
AATTGACCGGGCTTGAGGTTGGTCCTGTAACGTCTTTACGGCGTGGCATG
GTGGTGCTGTTCGATAATGTTTTTCCGTGCGGTCGTTTGTCTTGGAAATT
CCGACTGCTGCGCTGCGCAGGACAAAGTGGACGTTGTGAAGGTGACTATG
CAGGACAACATCCAGCAGATGCTCGCCAACGAGGAGCGGCTAGACCAGAT
CAGCGAAAACGCTGAGAACCTTAACGAACAGGTCAGTCCGGGATAAGGCT
ACGTTGGCCCATGAGGCGTTTATTTTTTGTTTAGATGTTAAGGGAAAGGA
GGGGAAGTGGCTCTTTCCCCACGGCACACCTGCCCCTCACCCCAGAAGTT
CCTACTAAATGGAAGTGTTATTTTCCATGTCAGACTTCCCTGGGGAATCG
ATACACACAAGCCTCACATTGCTGCCCTGAGGCGACCACAGAACCTAGCA
CGATTCGTACCTTCTAGCCGTGGTAGACCGTGAAGACTTGCTGTAACAAC
CGGGAGCGAGTATTTCGTGAGGTTCGCGTGGTGGTGGGTGGTTGGCGTGC
CAACCGAGTGCCGTTTTGTCTTGTCTTGCCCTTTTTTCTTGGTCAAATGC
GGTGGTTGTACAAATGAAATGTGGAGGTAGTATTCGATCGTAGGCGCCTT
CAACAACTACATGTAGCAGCATCGAACGACGTGTTTACTCTTTTAGAACT
GTTGTTGCTGCGCCTGACAAAATGGCCGTTTTGTCACGCAAAACAGCCTC
ACTCTGTGCTGCCGGCTGTTGTATTTTGCCACACTAAAGCTGTTATCCGC
GCTACGTCCTTGTACTGGCAGGCAAAGGTGTTCCAGAACCGCTCCTCCGC
GCTTCGGAGGCAGATGAGGTGCAAGGCGATCAAGGTAATGCCTATTTGAG
GTCGTCCTTTGTGGTGTGCTGCTGTTGTTCTTCTAAAGCCGGTGTTCCTT
CTAAGTTGCCGAAGATTAAGCGTCAATAACGGAAGCAGAGTTATGTTAGC
CCTCAACTTCGTACGCGCTGTCCTCTGATTCGACGTACACCAGGACTCGG
CTGATTTTCAATTTATTTGCAGATTTGGCTTGGTGGGGATTTTGTCATCC
TGACTTCGAACGAAACGTGTCCCGTACCAAATCTCGATCTCGCTCTGCAA
CTCGTAGCAAAACCTGATCTCGCTCCGCAACTGCCTGTTGGTCTTATCTA
CACCATCAGATGTGGTTGTTGCTGGCCATGGTGGTGATCATCCTGCTCAT
CATCATCATCGTGCCAATCGCAATGCACGCCAAGAACAACAGCGACTAGG
GAGGGGCAAAGTGGTGTGCACGGGGCATGTTGTGCACTCGCTCATGGTGC
CCGTTTCTCCAATGTATATCGTCGGCGATAAACCTGAAGCCCCCCCCCCC
CCGTCTTGAAGGCGGAGCGTAATATCCATTGAAACATGTCTTTAGTTTTT
GGGCATCGTCTGGTACCTACCGTGATCGATTTCAGTACGTTGTTTTTTGC
TGCTGTACATGTTGTGAACGGTGCTGCTTCCATACTCTGCCACACCTCGG
TTATTAACCTCGGCGTTGTCTGTCGTTGGCATGCTGGCTTGGTTGTGGGA
ATGCGAAGGGGCATGGCGCTCTCATTGCCCGGTCTCCGTTTCGACGGTTT
CGACGAGGAGAGAAAGAAGTGTGCGCAGAGCGGAAGAAGTGTGACCTACC
GTCGTAGGAGATGTGGGCGGTTGGTTCACAAATAAGCTTTTTAGACGTCT
TCCAGCGAACAGGCTACAAAAGTTGCTTTCGTACCTTTCGTATCACTTCC
CTGAAGGGCGCAGCTCACCGATGCACCCTCGGTCAGGCGCAGCCGATAAT
TACCTTGTGTGCTGCATCCACGTGTGCGGAGTGATGTATTGCCCGGCGAC
GCCGGTGCGATGTGGCGCCAGCTAGTTCTGTAGCGTACTGTATGAATCCT
GTTTCCAGCGGTCCGTGACCGCTATGTTCTCTCTTGGGTTTTCGCCCGTG
CCTTCAAAGGTGGTTATAACAACACCACATCGAGGAGGCGATGTCTCCTC
ATGAGCACAGGAAGGATAAATGTGGAGAGGGCACGAGGGAGTCGTTGCTT
CAAGTATAACGATCTCTCTACGTTTGTTTTATAAGAGGGGAAGGATGCTG
GCGTTTGGCGTACTCCTGGGGAACCAATGGACCAGTGCGCATGTCAAGCT
TTGATTAACACGATTTTTTTATGCAAAGCGACTTTTTGTGTGCGGGTTTC
AAGAATGACATGCCATGCCGAGACACGTCTACTCTTTGTCGGGTCGAGCC
TAAATGGCACGATCTCTGTGCCGCTTGAAAACCCTGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1255:13316..17902-

>mRNA_E-fasciculatus_F_contig1255.1955.1 ID=mRNA_E-fasciculatus_F_contig1255.1955.1|Name=mRNA_E-fasciculatus_F_contig1255.1955.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1170bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1255:13316..17902- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCAACCCGGACACGTTCGTGGAGCCTCGCAAGCGCTACTCCGTGGA
GGGCCGCATGTTCTCGATCCACTTTGTGGCGGACGACAGCAACCGCATCT
ACAGCTGCGTGACGGACAAGGAGTACCCTGCGAGAATCGCCTTCACCCTG
CTGGAGGAGGCACAGACCAAGTTCCTCACCAAGATGTCCAACCCGGACAC
GTTCGTGGAGCCTCGCAAGCGCTACTCCGTGGAGGGCCGCATGTTCTCGA
TCCACTTTGTGGCGGACGACAGCAACCGCATCTACAGCTGCGTGACGGAC
AAGGAGTACCCTGCGAGAATCGCCTTCACCCTGCTGGAGGAGGCACAGAC
CAAGTTCCTCACCAAGGTGGGGGACAAGTCGCTCACGGCTAAGGAGGGAG
GCTTGTCGCGCACGATGAAGTCAAGCTTCTCGGACCTGTGCATCAAGTAC
GACGACATCCGTAACGTGGACCGGATGGCAGCTGTACAGGCAAGCCAAAC
CTTCGTGGGGGACAAGTCGCTCACGGCTAAGGAGGGAGGCTTGTCGCGCA
CGATGAAGTCAAGCTTCTCGGACCTGTGCATCAAGTACGACGACATCCGT
AACGTGGACCGGATGGCAGCTGTACAGGCAAGCCAAACCTTCGACAAAGT
GGACGTTGTGAAGGTGACTATGCAGGACAACATCCAGCAGATGCTCGCCA
ACGAGGAGCGGCTAGACCAGATCAGCGAAAACGCTGAGAACCTTAACGAA
CAGGACAAAGTGGACGTTGTGAAGGTGACTATGCAGGACAACATCCAGCA
GATGCTCGCCAACGAGGAGCGGCTAGACCAGATCAGCGAAAACGCTGAGA
ACCTTAACGAACAGGCAAAGGTGTTCCAGAACCGCTCCTCCGCGCTTCGG
AGGCAGATGAGGTGCAAGGCGATCAAGGCAAAGGTGTTCCAGAACCGCTC
CTCCGCGCTTCGGAGGCAGATGAGGTGCAAGGCGATCAAGATGTGGTTGT
TGCTGGCCATGGTGGTGATCATCCTGCTCATCATCATCATCGTGCCAATC
GCAATGCACGCCAAGAACAACAGCGACTAGATGTGGTTGTTGCTGGCCAT
GGTGGTGATCATCCTGCTCATCATCATCATCGTGCCAATCGCAATGCACG
CCAAGAACAACAGCGACTAG
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