mRNA_E-fasciculatus_F_contig12515.1933.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12515.1933.1
Unique NamemRNA_E-fasciculatus_F_contig12515.1933.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12515.1933.1 vs. uniprot
Match: D7G7H8_ECTSI (Transmembrane 9 superfamily member n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7H8_ECTSI)

HSP 1 Score: 449 bits (1155), Expect = 2.460e-153
Identity = 224/230 (97.39%), Postives = 229/230 (99.57%), Query Frame = 1
Query:    1 QMTLLTAFSFPALAGSVFVLEGVQQWFIGSTGAVPFRILVLLMAMLLFVQTPLVFLGSFYGFKKEQPPQVVRTNQIPRMIPQTPWYVDPKVAVPFAGVLPFGAVLVELVFVMTAMWEQQLYYIFGFLMSVMLILTVTCAEISIVMCYFQLCSEDYRWWWRSLLWSGSCAGWMFIYSVGYYFTVLHMSGWMAASLFFGYTFVMTACFFLLTGTVGYFSCQWFINVIYSSIK 690
            +MTLLTAFSFPALAGSVFVLEG+QQWFIGSTGAVP RILVLL+AMLLFVQTPLVFLGSFYGFKKEQPPQVVRTNQIPRMIPQTPWYVDPKVAVPFAGVLPFGAVLVELVFVMTAMWEQQLYYIFGFLMSVMLILTVTCAEISIVMCYFQLCSEDYRWWWRSLLWSGSCAGWMFIYSVGYYFTVL+MSGWMAASLFFGYTFVMT+CFFLLTGTVGYFSCQWFINVIYSSIK
Sbjct:  415 KMTLLTAFSFPALAGSVFVLEGIQQWFIGSTGAVPVRILVLLVAMLLFVQTPLVFLGSFYGFKKEQPPQVVRTNQIPRMIPQTPWYVDPKVAVPFAGVLPFGAVLVELVFVMTAMWEQQLYYIFGFLMSVMLILTVTCAEISIVMCYFQLCSEDYRWWWRSLLWSGSCAGWMFIYSVGYYFTVLNMSGWMAASLFFGYTFVMTSCFFLLTGTVGYFSCQWFINVIYSSIK 644          
BLAST of mRNA_E-fasciculatus_F_contig12515.1933.1 vs. uniprot
Match: A0A835Z917_9STRA (Transmembrane 9 superfamily member n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z917_9STRA)

HSP 1 Score: 281 bits (720), Expect = 2.020e-88
Identity = 138/230 (60.00%), Postives = 177/230 (76.96%), Query Frame = 1
Query:    1 QMTLLTAFSFPALAGSVFVLEGVQQWFIGSTGAVPFRILVLLMAMLLFVQTPLVFLGSFYGFKKEQPPQVVRTNQIPRMIPQTPWYVDPKVAVPFAGVLPFGAVLVELVFVMTAMWEQQLYYIFGFLMSVMLILTVTCAEISIVMCYFQLCSEDYRWWWRSLLWSGSCAGWMFIYSVGYYFTVLHMSGWMAASLFFGYTFVMTACFFLLTGTVGYFSCQWFINVIYSSIK 690
            ++TLL A  +PA+  ++F L       +GST AV F  L  +M + L VQ PLVF+GS+YGFKKE P Q VRTNQIPR +P  PW++ P VA+PF G+LPFGAV VEL F++TA+W QQLYYIFGFL+ VM+IL +TCAEISIV+CYFQLC+ED+RWWWRS+ W+GSCAG+MF+YS+ YY   L MSG++ A ++FGY+ ++   F L+TGT+GYFSC WFI  IYSSIK
Sbjct:  373 KVTLLAATLYPAVCFAIFFLINFALRMVGSTAAVSFSALATIMLLWLTVQAPLVFIGSYYGFKKELPEQPVRTNQIPRQVPPQPWFLHPAVALPFGGILPFGAVSVELYFILTAVWLQQLYYIFGFLLLVMVILVLTCAEISIVLCYFQLCAEDHRWWWRSVQWAGSCAGYMFLYSMWYYLQDLQMSGFVPALMYFGYSALLAVSFALVTGTIGYFSCLWFITRIYSSIK 602          
BLAST of mRNA_E-fasciculatus_F_contig12515.1933.1 vs. uniprot
Match: A0A8J2WZ90_9STRA (Transmembrane 9 superfamily member n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZ90_9STRA)

HSP 1 Score: 246 bits (628), Expect = 1.860e-74
Identity = 118/228 (51.75%), Postives = 167/228 (73.25%), Query Frame = 1
Query:    7 TLLTAFSFPALAGSVFVLEGVQQWFIGSTGAVPFRILVLLMAMLLFVQTPLVFLGSFYGFKKEQPPQVVRTNQIPRMIPQTPWYVDPKVAVPFAGVLPFGAVLVELVFVMTAMWEQQLYYIFGFLMSVMLILTVTCAEISIVMCYFQLCSEDYRWWWRSLLWSGSCAGWMFIYSVGYYFTVLHMSGWMAASLFFGYTFVMTACFFLLTGTVGYFSCQWFINVIYSSIK 690
            TLLTA   P    + F++  +    +GS+GAVP   L+ L+ +   V  PLVFLG++ GFKK+  P  VRTNQIPR++P  PWY+ P +   F G+LPFGAV VEL FVM+A+W  Q+YYIFGFL  V +IL  TCAEI+I++CYFQLC+EDY WWWRS++ SG+CAG++F+Y+V Y+ + L ++G + ++L+FGY  +++  FFL+TGT+G+++C WF+N IY SIK
Sbjct:  406 TLLTATLVPGFTFACFLVIDISLLSVGSSGAVPVSTLLTLVVLWFGVSVPLVFLGAYVGFKKDVAPNPVRTNQIPRLVPPQPWYMHPALTTIFGGILPFGAVSVELFFVMSAIWLHQIYYIFGFLFLVSMILVATCAEITILLCYFQLCNEDYAWWWRSVMSSGACAGYVFLYAVWYFISELEITGGVPSTLYFGYMTLVSGIFFLVTGTIGFYACLWFVNKIYGSIK 633          
BLAST of mRNA_E-fasciculatus_F_contig12515.1933.1 vs. uniprot
Match: A0A8K0MU26_COCNU (Putative Transmembrane 9 superfamily member 8 n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0MU26_COCNU)

HSP 1 Score: 236 bits (601), Expect = 2.280e-74
Identity = 116/230 (50.43%), Postives = 165/230 (71.74%), Query Frame = 1
Query:    1 QMTLLTAFSFPALAGSVFVLEGVQQWFIGSTGAVPFRILVLLMAMLLFVQTPLVFLGSFYGFKKEQPPQVVRTNQIPRMIPQTPWYVDPKVAVPFAGVLPFGAVLVELVFVMTAMWEQQLYYIFGFLMSVMLILTVTCAEISIVMCYFQLCSEDYRWWWRSLLWSGSCAGWMFIYSVGYYFTVLHMSGWMAASLFFGYTFVMTACFFLLTGTVGYFSCQWFINVIYSSIK 690
            ++TL TAF FPA+  ++F +     W   S+GAVPF  +  L+ +   +  PLVFLGS+ GFK+      V+TN+IPR IP+  WY++P +++   G+LPFGAV +EL F++T++W QQ YYIFGFL  V LIL VTC EI+IV+CYFQLCSEDY WWWRS L +GS A ++F+YS+ Y+ T L ++   +A L+FGY F+ +  FF+LTGT+G+++C WF+ +IYSS+K
Sbjct:   55 KITLSTAFMFPAVVFAIFFVLNSIIWGEKSSGAVPFTTMFALVLLWFGISVPLVFLGSYIGFKQSATEDPVKTNKIPRQIPEQAWYMNPILSILVGGILPFGAVFIELFFILTSIWLQQFYYIFGFLFLVFLILVVTCVEITIVLCYFQLCSEDYLWWWRSYLTAGSSALYLFLYSIFYFVTKLEITKLGSAILYFGYMFIASYSFFVLTGTIGFYACFWFMRLIYSSVK 284          
BLAST of mRNA_E-fasciculatus_F_contig12515.1933.1 vs. uniprot
Match: F0Y3U4_AURAN (Transmembrane 9 superfamily member n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3U4_AURAN)

HSP 1 Score: 244 bits (623), Expect = 1.170e-73
Identity = 117/228 (51.32%), Postives = 165/228 (72.37%), Query Frame = 1
Query:    7 TLLTAFSFPALAGSVFVLEGVQQWFIGSTGAVPFRILVLLMAMLLFVQTPLVFLGSFYGFKKEQPPQVVRTNQIPRMIPQTPWYVDPKVAVPFAGVLPFGAVLVELVFVMTAMWEQQLYYIFGFLMSVMLILTVTCAEISIVMCYFQLCSEDYRWWWRSLLWSGSCAGWMFIYSVGYYFTVLHMSGWMAASLFFGYTFVMTACFFLLTGTVGYFSCQWFINVIYSSIK 690
            TLLTA +FP      F++  +    +GS+GAVP   L+ L+ +   V  PLVF G++ GFKK+  P  VRTNQIPR++P  PWY++  +   F G+LPFGAV VEL F+M+A+W  Q+YYIFGFL  VM+IL  TCAEI+I++CYFQLC+EDY WWWRS+L SG+CAG++ +Y+V YY   L ++G + ++L+FGY  +++  FFL+TG +G+++C WF+N IY SIK
Sbjct:  413 TLLTALAFPGFVFGAFLVIDMSLLAVGSSGAVPLTTLLTLVVLWFGVSVPLVFGGAYCGFKKDVEPHPVRTNQIPRLVPPQPWYMNAALTTTFGGILPFGAVSVELFFIMSAIWLHQIYYIFGFLFLVMIILVATCAEITILLCYFQLCNEDYNWWWRSVLSSGACAGYVLLYAVWYYVFELEITGVVPSTLYFGYMILISLSFFLITGAIGFYACFWFVNKIYGSIK 640          
BLAST of mRNA_E-fasciculatus_F_contig12515.1933.1 vs. uniprot
Match: A0A7S4BHG5_CHRCT (Transmembrane 9 superfamily member n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BHG5_CHRCT)

HSP 1 Score: 232 bits (592), Expect = 1.970e-73
Identity = 110/221 (49.77%), Postives = 159/221 (71.95%), Query Frame = 1
Query:   28 FPALAGSVFVLEGVQQWFIGSTGAVPFRILVLLMAMLLFVQTPLVFLGSFYGFKKEQPPQVVRTNQIPRMIPQTPWYVDPKVAVPFAGVLPFGAVLVELVFVMTAMWEQQLYYIFGFLMSVMLILTVTCAEISIVMCYFQLCSEDYRWWWRSLLWSGSCAGWMFIYSVGYYFTVLHMSGWMAASLFFGYTFVMTACFFLLTGTVGYFSCQWFINVIYSSIK 690
            FP +  ++F +     W   S+GAVPF  L  L+ +   +  PLVFLG+++G++++     VR NQIPR +P+  WY+ P  +V   GVLPFGAV +EL F+++++W  Q YY+FGFL+ V +IL +TCAEI++VMCYFQLC+EDY WWWR+ L SGS AG+MF YSV Y+FT L ++ +++A L+FGY F+ T  FFLLTGT+G+++C WF+  I+S+IK
Sbjct:   33 FPGIVFTIFFVLNFFVWGEKSSGAVPFGTLCALLVLWFGISMPLVFLGAYFGYRRKPLDLPVRVNQIPRQVPEQVWYMQPAFSVTVGGVLPFGAVFIELFFILSSIWLHQFYYVFGFLLLVFIILIITCAEITMVMCYFQLCAEDYHWWWRAFLTSGSSAGYMFAYSVFYFFTKLEITKFVSALLYFGYMFIATIVFFLLTGTIGFYACYWFVWKIFSAIK 253          
BLAST of mRNA_E-fasciculatus_F_contig12515.1933.1 vs. uniprot
Match: A0A7S4F1H2_CHRCT (Transmembrane 9 superfamily member n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F1H2_CHRCT)

HSP 1 Score: 234 bits (598), Expect = 2.080e-73
Identity = 112/227 (49.34%), Postives = 163/227 (71.81%), Query Frame = 1
Query:   10 LLTAFSFPALAGSVFVLEGVQQWFIGSTGAVPFRILVLLMAMLLFVQTPLVFLGSFYGFKKEQPPQVVRTNQIPRMIPQTPWYVDPKVAVPFAGVLPFGAVLVELVFVMTAMWEQQLYYIFGFLMSVMLILTVTCAEISIVMCYFQLCSEDYRWWWRSLLWSGSCAGWMFIYSVGYYFTVLHMSGWMAASLFFGYTFVMTACFFLLTGTVGYFSCQWFINVIYSSIK 690
            +LT+  FP +  ++F +     W   S+GAVPF  L  L+ +   +  PLVFLG+++G++++     VR NQIPR +P+  WY+ P  +V   GVLPFGAV +EL F+++++W  Q YY+FGFL+ V +IL +TCAEI++VMCYFQLC+EDY WWWR+ L SGS AG+MF YSV Y+FT L ++ +++A L+FGY F+ T  FFLLTGT+G+++C WF+  I+S+IK
Sbjct:   96 ILTSCLFPGIVFTIFFVLNFFVWGEKSSGAVPFGTLCALLVLWFGISMPLVFLGAYFGYRRKPLDLPVRVNQIPRQVPEQVWYMQPAFSVTVGGVLPFGAVFIELFFILSSIWLHQFYYVFGFLLLVFIILIITCAEITMVMCYFQLCAEDYHWWWRAFLTSGSSAGYMFAYSVFYFFTKLEITKFVSALLYFGYMFIATIVFFLLTGTIGFYACYWFVWKIFSAIK 322          
BLAST of mRNA_E-fasciculatus_F_contig12515.1933.1 vs. uniprot
Match: A0A427AD14_ENSVE (Transmembrane 9 superfamily member n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427AD14_ENSVE)

HSP 1 Score: 236 bits (601), Expect = 2.840e-73
Identity = 115/230 (50.00%), Postives = 162/230 (70.43%), Query Frame = 1
Query:    1 QMTLLTAFSFPALAGSVFVLEGVQQWFIGSTGAVPFRILVLLMAMLLFVQTPLVFLGSFYGFKKEQPPQVVRTNQIPRMIPQTPWYVDPKVAVPFAGVLPFGAVLVELVFVMTAMWEQQLYYIFGFLMSVMLILTVTCAEISIVMCYFQLCSEDYRWWWRSLLWSGSCAGWMFIYSVGYYFTVLHMSGWMAASLFFGYTFVMTACFFLLTGTVGYFSCQWFINVIYSSIK 690
            ++TL TAF+FP +  ++F +     W   S+GAVPF  +  L+ +   +  PLVF+GS+ GFKK  P   V+TN+IPR IP+  WY++P  ++   G+LPFGAV +EL F++T++W  Q YYIFGFL  V LIL VTCAEI+IV+CYFQLCSEDY WWWRS L SGS A ++F+Y+  Y+FT L ++  ++  L+FGY  + +  FF+LTGT+G+ +C WF  +IYSS+K
Sbjct:  139 KITLKTAFTFPGIVFAIFFVLNALIWGEKSSGAVPFTTMFALVLLWFGISVPLVFVGSYLGFKKPAPEDPVKTNKIPRQIPEQAWYMNPVFSILIGGILPFGAVFIELFFILTSIWLHQFYYIFGFLFLVFLILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSGLLYFGYMLIASYAFFVLTGTIGFCACFWFTRLIYSSVK 368          
BLAST of mRNA_E-fasciculatus_F_contig12515.1933.1 vs. uniprot
Match: A0A7S2WV93_9STRA (Transmembrane 9 superfamily member n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV93_9STRA)

HSP 1 Score: 242 bits (617), Expect = 1.030e-72
Identity = 123/228 (53.95%), Postives = 161/228 (70.61%), Query Frame = 1
Query:    7 TLLTAFSFPALAGSVFVLEGVQQWFIGSTGAVPFRILVLLMAMLLFVQTPLVFLGSFYGFKKEQPPQVVRTNQIPRMIPQTPWYVDPKVAVPFAGVLPFGAVLVELVFVMTAMWEQQLYYIFGFLMSVMLILTVTCAEISIVMCYFQLCSEDYRWWWRSLLWSGSCAGWMFIYSVGYYFTVLHMSGWMAASLFFGYTFVMTACFFLLTGTVGYFSCQWFINVIYSSIK 690
            T+ TA  FP L   +FV   V   F GS+GA+P      L+ +   V TPLVF+GS++G+KKE     VR N IPR IP  PW+++P V + F G+LPFGAV VEL FVM+A+W  Q+YYIFGFL  VM+IL  TCAE +I+MCYFQLC+ED+RWWWRS+L SGSC+ ++F+Y+V Y+FT L + G + A L+FGY  +++  FFLLTG +GY SC WF+  IY SIK
Sbjct:  420 TVATALLFPGLLAFIFVALDVLLMFEGSSGAIPLSTFCTLVVLWFGVSTPLVFVGSYFGYKKEAYTPPVRVNLIPRQIPPQPWFMNPLVTIFFGGILPFGAVSVELFFVMSALWLHQIYYIFGFLFLVMMILVATCAETTILMCYFQLCNEDHRWWWRSVLSSGSCSIYVFLYAVWYFFTELEIEGVVPALLYFGYMAMISIGFFLLTGAIGYLSCFWFVAKIYGSIK 647          
BLAST of mRNA_E-fasciculatus_F_contig12515.1933.1 vs. uniprot
Match: A0A7S3BJU6_9EUKA (Transmembrane 9 superfamily member n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BJU6_9EUKA)

HSP 1 Score: 241 bits (614), Expect = 2.390e-72
Identity = 117/230 (50.87%), Postives = 159/230 (69.13%), Query Frame = 1
Query:    1 QMTLLTAFSFPALAGSVFVLEGVQQWFIGSTGAVPFRILVLLMAMLLFVQTPLVFLGSFYGFKKEQPPQVVRTNQIPRMIPQTPWYVDPKVAVPFAGVLPFGAVLVELVFVMTAMWEQQLYYIFGFLMSVMLILTVTCAEISIVMCYFQLCSEDYRWWWRSLLWSGSCAGWMFIYSVGYYFTVLHMSGWMAASLFFGYTFVMTACFFLLTGTVGYFSCQWFINVIYSSIK 690
            QMTLLT F +P +  + F +     W  GS+GA+PF  +V L+ M   +  PLVFLG+F+GFK +      RTN+IPR IP+  WY+     V   G+LPFGA+ +EL F+MT++W Q+ YY+FGFL  V+LILT+TCAEISIV+CYFQLC+EDY WWWRS L SGS   ++F YS+ Y+FT L + G++   ++F Y  V    FFL+TGT+G++SC WF+  IYS+IK
Sbjct:  409 QMTLLTGFLYPTIIATTFFVLNFFIWSQGSSGAIPFGTMVALLLMWFCISVPLVFLGAFFGFKAKLKDPPTRTNEIPRQIPEQAWYMGGTFNVLMGGILPFGAIFIELFFIMTSVWLQRFYYVFGFLALVLLILTITCAEISIVLCYFQLCNEDYNWWWRSFLTSGSSGLYLFAYSIMYFFTQLEILGFVPTLIYFTYMVVFAVLFFLVTGTIGFYSCYWFVWTIYSAIK 638          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12515.1933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7H8_ECTSI2.460e-15397.39Transmembrane 9 superfamily member n=2 Tax=Ectocar... [more]
A0A835Z917_9STRA2.020e-8860.00Transmembrane 9 superfamily member n=1 Tax=Tribone... [more]
A0A8J2WZ90_9STRA1.860e-7451.75Transmembrane 9 superfamily member n=1 Tax=Pelagom... [more]
A0A8K0MU26_COCNU2.280e-7450.43Putative Transmembrane 9 superfamily member 8 n=1 ... [more]
F0Y3U4_AURAN1.170e-7351.32Transmembrane 9 superfamily member n=1 Tax=Aureoco... [more]
A0A7S4BHG5_CHRCT1.970e-7349.77Transmembrane 9 superfamily member n=1 Tax=Chrysot... [more]
A0A7S4F1H2_CHRCT2.080e-7349.34Transmembrane 9 superfamily member n=1 Tax=Chrysot... [more]
A0A427AD14_ENSVE2.840e-7350.00Transmembrane 9 superfamily member n=2 Tax=Ensete ... [more]
A0A7S2WV93_9STRA1.030e-7253.95Transmembrane 9 superfamily member n=1 Tax=Rhizoch... [more]
A0A7S3BJU6_9EUKA2.390e-7250.87Transmembrane 9 superfamily member n=1 Tax=Haptoli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12515contigE-fasciculatus_F_contig12515:1114..3966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score444.1
Seed ortholog evalue3.9e-122
Seed eggNOG ortholog2880.D7G7H8
KEGG koko:K17086
EggNOG free text desc.positive regulation of protein exit from endoplasmic reticulum
EggNOG OGsKOG1278@1,KOG1278@2759
Ec32 ortholog descriptionEMP/nonaspanin domain family protein
Ec32 orthologEc-02_000340.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Hectar predicted targeting categorysignal peptide
Exons5
Model size690
Cds size687
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12515.1933.1prot_E-fasciculatus_F_contig12515.1933.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12515 1114..3963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927757.5799112-CDS-E-fasciculatus_F_contig12515:1113..12391622927757.5799112-CDS-E-fasciculatus_F_contig12515:1113..1239Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12515 1114..1239 -
1695995682.1998024-CDS-E-fasciculatus_F_contig12515:1113..12391695995682.1998024-CDS-E-fasciculatus_F_contig12515:1113..1239Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12515 1114..1239 -
1622927757.5913794-CDS-E-fasciculatus_F_contig12515:1785..18791622927757.5913794-CDS-E-fasciculatus_F_contig12515:1785..1879Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12515 1786..1879 -
1695995682.2151036-CDS-E-fasciculatus_F_contig12515:1785..18791695995682.2151036-CDS-E-fasciculatus_F_contig12515:1785..1879Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12515 1786..1879 -
1622927757.6077104-CDS-E-fasciculatus_F_contig12515:2273..24731622927757.6077104-CDS-E-fasciculatus_F_contig12515:2273..2473Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12515 2274..2473 -
1695995682.226942-CDS-E-fasciculatus_F_contig12515:2273..24731695995682.226942-CDS-E-fasciculatus_F_contig12515:2273..2473Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12515 2274..2473 -
1622927757.6317668-CDS-E-fasciculatus_F_contig12515:2879..29421622927757.6317668-CDS-E-fasciculatus_F_contig12515:2879..2942Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12515 2880..2942 -
1695995682.235417-CDS-E-fasciculatus_F_contig12515:2879..29421695995682.235417-CDS-E-fasciculatus_F_contig12515:2879..2942Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12515 2880..2942 -
1622927757.6431046-CDS-E-fasciculatus_F_contig12515:3759..39631622927757.6431046-CDS-E-fasciculatus_F_contig12515:3759..3963Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12515 3760..3963 -
1695995682.2438722-CDS-E-fasciculatus_F_contig12515:3759..39631695995682.2438722-CDS-E-fasciculatus_F_contig12515:3759..3963Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12515 3760..3963 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927757.6568205-UTR-E-fasciculatus_F_contig12515:3963..39661622927757.6568205-UTR-E-fasciculatus_F_contig12515:3963..3966Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12515 3964..3966 -
1695995682.2522407-UTR-E-fasciculatus_F_contig12515:3963..39661695995682.2522407-UTR-E-fasciculatus_F_contig12515:3963..3966Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12515 3964..3966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12515.1933.1

>prot_E-fasciculatus_F_contig12515.1933.1 ID=prot_E-fasciculatus_F_contig12515.1933.1|Name=mRNA_E-fasciculatus_F_contig12515.1933.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=229bp
MTLLTAFSFPALAGSVFVLEGVQQWFIGSTGAVPFRILVLLMAMLLFVQT
PLVFLGSFYGFKKEQPPQVVRTNQIPRMIPQTPWYVDPKVAVPFAGVLPF
GAVLVELVFVMTAMWEQQLYYIFGFLMSVMLILTVTCAEISIVMCYFQLC
SEDYRWWWRSLLWSGSCAGWMFIYSVGYYFTVLHMSGWMAASLFFGYTFV
MTACFFLLTGTVGYFSCQWFINVIYSSIK
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mRNA from alignment at E-fasciculatus_F_contig12515:1114..3966-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12515.1933.1 ID=mRNA_E-fasciculatus_F_contig12515.1933.1|Name=mRNA_E-fasciculatus_F_contig12515.1933.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2853bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12515:1114..3966- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGATGACTCTCCTGACGGCGTTCTCCTTCCCGGCCCTGGCGGGGTCCGT GTTCGTGTTGGAGGGGGTCCAGCAGTGGTTCATCGGCTCCACGGGGGCGG TGCCGTTCCGCATCCTGGTCCTGTTGATGGCGATGCTGCTGTTCGTTCAG ACCCCCCTCGTCTTCCTCGGATCGTTCTACGGCTTCAAGAAGGAGCAGCC GCCGCAGGTTTGTTGCACAATGATTGATTTTTTTTTTTATGAAGGCCGGA AAACGCCCCATTTACCGTGTTCTTCTACAGCTTGAAGAAGTAAAAACCGC CGCAGGTCTGTTGCACAATGCTAATTGTCTACCAAAAAAGGCGTGAAAAA ACGCCACTATATGTTGTAAGATAGTCTATATTTGTACGTAGAATAGTAGA ATACAATAATGGAAAGACTAACACTATCGGAGCCGTATGCATACCACAGT CGAACGGATGGGGTTGTGTCGCATTGTTTTCGTTCGAAATATGACACGAC AAATATTCATCTCTATCATCAGAAAATAGCCTAGAGAAAGACTAGCAGAG GTTTGCGCGTACTGCTGTGTCGCAAAGCTCTCCACAAGGGCTTCAAGGGT CAATCTCATTCACGTTTATATGCTCGTTTGCTTCCCCCCCGCCCCCCCCA AAGGTGCAAGATGGAAATGTGGTGAATGAGATATGGTTTTCCTATCACTT ACAGTCGTATTTGATGTGTTCCGCTGGTTCAGCCTGTTTCAGTAGCCATT TTTTCTTGTTTCAGCCGTTCAAATCGCCTTCCGGAATCAAGAACGGCAAG TATTATTCACGCGTTTGGCGGTTTCAATACTTGACCTGTTGATCACTTGA ATACGACCCGCACACACGCGAGCACGATTGGCGCGACTCCTTGCTTCCCC TCAACCCCTCTCCCCTCCTCGTGCCCTCACAACTCCTCTCGTGTTCGTTT GTCTTCCGCTCGCCTCGGCTGATGTGTTTTGTCACTCTGTTGGTACTCTT TGTTTTTTGCCGTTTGTTTGTCAGGTGGTAAGAACGAACCAGATCCCCCG CATGATCCCCCAGACGCCGTGGTACGTCGACCCCAAGGTGAGCGAGCGTT ACATATCTACCGTACAGTACAGTACTGTACTGTACAACAAGAGTCGTATC TAGAACCTTATCGTAGATTCTTGTCTGGAAATGATACCGCAAGCACAATA TTTGAAAAGGTAATGACGGCCGTTTGAGAAGAAAAATTGTGGCAAGGCGG CGAAAAATGAAAGACTCCTGGAACCGGCGACCCACAGCTGGCGCATCCAG CAACATTAACATTCCGCCAAAGACAGAGCAACAATCGACAATTTAAGTGC ATGGAGATGTCCCACTCACGTACAGGCTAATTGTTTCGTGGGTTTCCCCT GCTACAGAATCGCACGTGCATCTCTTTGTTCTCTTAATCCTTGTCTTTTC CTTGCCTACCGTGCTGGCCTGGGCCGGTCGGTCGGTCGGTCAGGTGGCTG TTCCCTTCGCGGGCGTGCTGCCCTTTGGGGCCGTGCTGGTGGAGCTGGTG TTCGTCATGACCGCCATGTGGGAGCAGCAGCTCTACTACATCTTCGGATT CTTGATGTCCGTCATGCTCATCCTCACCGTTACCTGCGCCGAGATCAGCA TCGTCATGTGCTACTTCCAGCTCTGCTCGGAGGACTACCGCTGGTGCGTT GTTGAACAATCACATCGCAGCAAGCTTTCGTATACGCAATACGCATGCAC AGGGAACAAGATAGGAGCGCCATCAGGGAACAGCGCACGTTGAACGGAGA ATTCATTTTACTAAACAGACGTGGAATGAGAGCGGTTTTGGGAATCATCG GGTGCCACCTGACAAGCATCTCCCCAGATGCCGGTTGCTCCGTGATGCAT CCCTCTATATTTTGTCGCAAGGGGAAGGCCATTTGGGACCCGCTGCCGAC TCACGCGACCCCTCAACGTTTTTTTTGTGACCCCATGACTTTCTCTCTTG GCATTCCTCGCGTGTCGTCTTGATCCTGTTCTCTCTCTCACTCACTCTCG GTTGACTCATCTGTTTTTTTTATCTTTTTTTTTTCAGGTGGTGGCGTTCA CTGCTGTGGTCCGGGTCGTGCGCAGGCTGGATGTTCATCTACTCTGTTGG GTACTACTTCACCGTGCTCCACATGAGCGGGGTGAGTTATTAGTTATTAT ATAAAAGTGGCAATGCTGTCGTCGTCTTCGTCGTATGTATGCATTCGTTT GTTTTTTTTTTCCGTTGGTAGTTGAAGCAGATCGATCGGTTTCCCACGTC GCTCGTCCTGTGAAATCGTGAAACGTGTCCGATTGCGCCGCATGAACCTG CGGTTGATATCCTCTCGGGTGTTCAGCCTCACTCTCTGGGTACCCGTCAG AATCAGTACTGTATGTCTACAATACCGACCGAGGGTTTGAATCGGGGTGA TGTCGTGGAGGTAGTTCTGTGATAAGCCGCGCACGCGCGCTCCACCAGAC CTCAATTGGCGAAAGCTTCCGAGCCGGAATGTGTTGAGTTGAGTTTGCCG AACCTGACTGTGACTGTAGCCCTCAAAATGGCTTGCTGTGGCCCACACGT ATCGACATGTCCGGTACATTGATTGCGGCAACAACACACTCACGCCTCAC GCACATGACATTGGTGGGTTGGCATCGTTTTTTTCTGTCCTTGTCCTTGG TGATACGATACGATACGTACTCTACAGTGGATGGCAGCATCGCTCTTCTT CGGCTACACGTTCGTCATGACGGCGTGCTTCTTCCTTTTGACGGGCACCG TGGGATACTTCTCCTGCCAGTGGTTCATTAACGTCATCTATTCCTCCATC AAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12515:1114..3966-

>mRNA_E-fasciculatus_F_contig12515.1933.1 ID=mRNA_E-fasciculatus_F_contig12515.1933.1|Name=mRNA_E-fasciculatus_F_contig12515.1933.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1374bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12515:1114..3966- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACTCTCCTGACGGCGTTCTCCTTCCCGGCCCTGGCGGGGTCCGTGTT
CGTGTTGGAGGGGGTCCAGCAGTGGTTCATCGGCTCCACGGGGGCGGTGC
CGTTCCGCATCCTGGTCCTGTTGATGGCGATGCTGCTGTTCGTTCAGACC
CCCCTCGTCTTCCTCGGATCGTTCTACGGCTTCAAGAAGGAGCAGCCGCC
GCAGATGACTCTCCTGACGGCGTTCTCCTTCCCGGCCCTGGCGGGGTCCG
TGTTCGTGTTGGAGGGGGTCCAGCAGTGGTTCATCGGCTCCACGGGGGCG
GTGCCGTTCCGCATCCTGGTCCTGTTGATGGCGATGCTGCTGTTCGTTCA
GACCCCCCTCGTCTTCCTCGGATCGTTCTACGGCTTCAAGAAGGAGCAGC
CGCCGCAGGTGGTAAGAACGAACCAGATCCCCCGCATGATCCCCCAGACG
CCGTGGTACGTCGACCCCAAGGTGGTAAGAACGAACCAGATCCCCCGCAT
GATCCCCCAGACGCCGTGGTACGTCGACCCCAAGGTGGCTGTTCCCTTCG
CGGGCGTGCTGCCCTTTGGGGCCGTGCTGGTGGAGCTGGTGTTCGTCATG
ACCGCCATGTGGGAGCAGCAGCTCTACTACATCTTCGGATTCTTGATGTC
CGTCATGCTCATCCTCACCGTTACCTGCGCCGAGATCAGCATCGTCATGT
GCTACTTCCAGCTCTGCTCGGAGGACTACCGCTGGTGGCTGTTCCCTTCG
CGGGCGTGCTGCCCTTTGGGGCCGTGCTGGTGGAGCTGGTGTTCGTCATG
ACCGCCATGTGGGAGCAGCAGCTCTACTACATCTTCGGATTCTTGATGTC
CGTCATGCTCATCCTCACCGTTACCTGCGCCGAGATCAGCATCGTCATGT
GCTACTTCCAGCTCTGCTCGGAGGACTACCGCTGGTGGTGGCGTTCACTG
CTGTGGTCCGGGTCGTGCGCAGGCTGGATGTTCATCTACTCTGTTGGGTA
CTACTTCACCGTGCTCCACATGAGCGGGGTGGTGGCGTTCACTGCTGTGG
TCCGGGTCGTGCGCAGGCTGGATGTTCATCTACTCTGTTGGGTACTACTT
CACCGTGCTCCACATGAGCGGGTGGATGGCAGCATCGCTCTTCTTCGGCT
ACACGTTCGTCATGACGGCGTGCTTCTTCCTTTTGACGGGCACCGTGGGA
TACTTCTCCTGCCAGTGGTTCATTAACGTCATCTATTCCTCCATCAAGTG
GATGGCAGCATCGCTCTTCTTCGGCTACACGTTCGTCATGACGGCGTGCT
TCTTCCTTTTGACGGGCACCGTGGGATACTTCTCCTGCCAGTGGTTCATT
AACGTCATCTATTCCTCCATCAAG
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