mRNA_E-fasciculatus_F_contig12477.1905.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12477.1905.1
Unique NamemRNA_E-fasciculatus_F_contig12477.1905.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12477.1905.1 vs. uniprot
Match: D7FW95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW95_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 5.350e-48
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 1 
Query:    1 LTIAAAAGKTSDVVRSIELGGDVDTTLNTFTPLMRAATWGSVDTLATLIAQGADMFATDRQGRTALDWSRIARRDKAARILERAMENEIRYRR 279
            LT+AAAAGKTSDVVRSIELGGDVDTTLNTFTPLMRAATWG VDTLATLIA+GADMFATDRQGRTALDWSRIARRDKAARILERAMENEIRYRR
Sbjct:   48 LTLAAAAGKTSDVVRSIELGGDVDTTLNTFTPLMRAATWGHVDTLATLIAEGADMFATDRQGRTALDWSRIARRDKAARILERAMENEIRYRR 140
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12477.1905.1 vs. uniprot
Match: A0A6H5L2H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H6_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 5.970e-47
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:    1 LTIAAAAGKTSDVVRSIELGGDVDTTLNTFTPLMRAATWGSVDTLATLIAQGADMFATDRQGRTALDWSRIARRDKAARILERAMENEIRYRR 279
            LT+AAAAGKTSDVVRSIELGGDVDTTLNTFTPLMRAATWG VDTLATLIA+GADMF TDRQGRTALDWSRIARRDKAARILERAMENEIRYRR
Sbjct:   17 LTLAAAAGKTSDVVRSIELGGDVDTTLNTFTPLMRAATWGHVDTLATLIAEGADMFTTDRQGRTALDWSRIARRDKAARILERAMENEIRYRR 109
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12477.1905.1 vs. uniprot
Match: A0A5A8CKZ0_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CKZ0_CAFRO)

HSP 1 Score: 51.2 bits (121), Expect = 5.000e-6
Identity = 29/68 (42.65%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:   10 AAAAGKTSDVVRSIELGGDVD-TTLNTFTPLMRAATWGSVDTLATLIAQGADMFATDRQGRTALDWSR 210
            AA AG T +V R ++ G  V+ + +   TPLMRAAT+G V+++  L+ +GAD+ A D+ G++A+D S+
Sbjct:   18 AAEAGNTGEVTRLLKAGAPVNWSNVYRQTPLMRAATFGHVESIQVLLDRGADLEAKDKAGKSAIDLSK 85
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12477.1905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FW95_ECTSI5.350e-4896.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2H6_9PHAE5.970e-4795.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5A8CKZ0_CAFRO5.000e-642.65Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12477contigE-fasciculatus_F_contig12477:1735..2016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927754.6332383-CDS-E-fasciculatus_F_contig12477:1734..20161622927754.6332383-CDS-E-fasciculatus_F_contig12477:1734..2016Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12477 1735..2016 -
1695995680.4479306-CDS-E-fasciculatus_F_contig12477:1734..20161695995680.4479306-CDS-E-fasciculatus_F_contig12477:1734..2016Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12477 1735..2016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12477.1905.1prot_E-fasciculatus_F_contig12477.1905.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12477 1735..2016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12477.1905.1

>prot_E-fasciculatus_F_contig12477.1905.1 ID=prot_E-fasciculatus_F_contig12477.1905.1|Name=mRNA_E-fasciculatus_F_contig12477.1905.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=94bp
LTIAAAAGKTSDVVRSIELGGDVDTTLNTFTPLMRAATWGSVDTLATLIA
QGADMFATDRQGRTALDWSRIARRDKAARILERAMENEIRYRR*
back to top

mRNA from alignment at E-fasciculatus_F_contig12477:1735..2016-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12477.1905.1 ID=mRNA_E-fasciculatus_F_contig12477.1905.1|Name=mRNA_E-fasciculatus_F_contig12477.1905.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=282bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12477:1735..2016- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGACCATCGCTGCCGCCGCCGGCAAGACCTCCGACGTGGTAAGGTCCAT
CGAGCTAGGAGGGGATGTGGACACGACCCTCAACACTTTCACCCCGCTCA
TGCGCGCGGCGACCTGGGGTAGCGTCGACACGCTGGCCACCCTAATCGCT
CAAGGCGCCGACATGTTCGCAACGGATAGGCAGGGTCGGACAGCTCTGGA
CTGGAGTCGCATCGCGCGACGCGACAAGGCGGCTCGAATTTTGGAGCGGG
CGATGGAGAACGAGATTCGATACCGCAGGTAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12477:1735..2016-

>mRNA_E-fasciculatus_F_contig12477.1905.1 ID=mRNA_E-fasciculatus_F_contig12477.1905.1|Name=mRNA_E-fasciculatus_F_contig12477.1905.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=564bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12477:1735..2016- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGACCATCGCTGCCGCCGCCGGCAAGACCTCCGACGTGGTAAGGTCCAT
CGAGCTAGGAGGGGATGTGGACACGACCCTCAACACTTTCACCCCGCTCA
TGCGCGCGGCGACCTGGGGTAGCGTCGACACGCTGGCCACCCTAATCGCT
CAAGGCGCCGACATGTTCGCAACGGATAGGCAGGGTCGGACAGCTCTGGA
CTGGAGTCGCATCGCGCGACGCGACAAGGCGGCTCGAATTTTGGAGCGGG
CGATGGAGAACGAGATTCGATACCGCAGGTAGTTGACCATCGCTGCCGCC
GCCGGCAAGACCTCCGACGTGGTAAGGTCCATCGAGCTAGGAGGGGATGT
GGACACGACCCTCAACACTTTCACCCCGCTCATGCGCGCGGCGACCTGGG
GTAGCGTCGACACGCTGGCCACCCTAATCGCTCAAGGCGCCGACATGTTC
GCAACGGATAGGCAGGGTCGGACAGCTCTGGACTGGAGTCGCATCGCGCG
ACGCGACAAGGCGGCTCGAATTTTGGAGCGGGCGATGGAGAACGAGATTC
GATACCGCAGGTAG
back to top