mRNA_E-fasciculatus_F_contig12474.1902.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12474.1902.1
Unique NamemRNA_E-fasciculatus_F_contig12474.1902.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A6H5KY11_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY11_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 1.270e-84
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 1
Query:    1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLSCKG 402
            LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTT+SGVAHAAYDNDLEALRAARELYGFLPLSCKG
Sbjct:  146 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTVSGVAHAAYDNDLEALRAARELYGFLPLSCKG 279          
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A812Z5R2_SYMMI (PccB protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z5R2_SYMMI)

HSP 1 Score: 219 bits (557), Expect = 1.090e-69
Identity = 106/131 (80.92%), Postives = 121/131 (92.37%), Query Frame = 1
Query:    1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLS 393
            +G PVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASG IPQ+S+IMG CAGGAVYSPAMTDFIFMV+R+SYMFVTGP VVKTVT E+VTQE LGGA++HT++SGVAH A+ ND+EALRA R+LY +LPL+
Sbjct:   55 VGAPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGVIPQISMIMGPCAGGAVYSPAMTDFIFMVQRTSYMFVTGPNVVKTVTMEDVTQEELGGAETHTSLSGVAHGAFANDVEALRALRQLYSYLPLN 185          
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A482RZS8_9ARCH (CoA carboxyltransferase N-terminal domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZS8_9ARCH)

HSP 1 Score: 215 bits (548), Expect = 1.820e-69
Identity = 108/132 (81.82%), Postives = 120/132 (90.91%), Query Frame = 1
Query:    4 GCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLSCK 399
            G PVIGLNDSGGARIQEGVDSLAGYADVF RNVDASG IPQLSL+MG CAGGAVYSPAMTDFIFMV+R+S+MFVTGP VVKTVT EEVTQEVLGGA +HT++SGVAHAA+ ND+ ALR AREL+ +LPL+ K
Sbjct:    8 GAPVIGLNDSGGARIQEGVDSLAGYADVFLRNVDASGVIPQLSLVMGPCAGGAVYSPAMTDFIFMVQRTSHMFVTGPNVVKTVTGEEVTQEVLGGADTHTSVSGVAHAAFQNDVLALRGARELFEYLPLNNK 139          
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A482RCA6_9ARCH (CoA carboxyltransferase N-terminal domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RCA6_9ARCH)

HSP 1 Score: 216 bits (549), Expect = 6.590e-68
Identity = 104/134 (77.61%), Postives = 120/134 (89.55%), Query Frame = 1
Query:    1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLSCKG 402
            +G PVIGLNDSGGARIQEGVDSLAGYA+VFQRNVDASG +PQ+S+IMG CAGGAVYSPAMTDF FMV+ +SYMFVTGP VVKTVT+E+VTQE LGGA++HT+ SGVAH ++DNDL+A+ A RE Y FLPLS KG
Sbjct:  167 VGVPVIGLNDSGGARIQEGVDSLAGYAEVFQRNVDASGYVPQISVIMGPCAGGAVYSPAMTDFTFMVRDTSYMFVTGPNVVKTVTREDVTQEELGGAKTHTSKSGVAHGSFDNDLDAIAALREFYNFLPLSAKG 300          
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A7S0SX47_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SX47_9STRA)

HSP 1 Score: 211 bits (538), Expect = 3.050e-66
Identity = 103/133 (77.44%), Postives = 119/133 (89.47%), Query Frame = 1
Query:    1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLSCK 399
            +G PVIGLNDSGGARIQEG+DSL GYADVF +NV+ASG IPQ+S+IMG CAGGAVYSPAMTDFIFMVKRSSYMFVTGP VVKTVTQE+VTQE LGGA++HT++SGVAH A+DND+ AL   REL+ +LPL+ K
Sbjct:  126 VGAPVIGLNDSGGARIQEGIDSLGGYADVFLKNVNASGIIPQISVIMGPCAGGAVYSPAMTDFIFMVKRSSYMFVTGPSVVKTVTQEDVTQEELGGAETHTSLSGVAHGAFDNDIIALEKIRELFQYLPLNNK 258          
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A836CAR6_9STRA (Propionyl-CoA carboxylase beta chain mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR6_9STRA)

HSP 1 Score: 214 bits (545), Expect = 7.870e-65
Identity = 108/130 (83.08%), Postives = 116/130 (89.23%), Query Frame = 1
Query:    4 GCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLS 393
            G PVIGLNDSGGARIQEGVDSLAGYA+VFQRNVDASG IPQLSLIMG CAGGAVYSPA+TDFI MV+ SSYMFVTGP VVKTVTQE VTQE LGGA +H ++SGVAH A DNDL AL+AAREL+ FLPLS
Sbjct:  135 GAPVIGLNDSGGARIQEGVDSLAGYAEVFQRNVDASGLIPQLSLIMGPCAGGAVYSPALTDFIMMVRNSSYMFVTGPDVVKTVTQETVTQEALGGADTHCSVSGVAHVARDNDLAALKAARELFDFLPLS 264          
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A7S2RD78_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RD78_9STRA)

HSP 1 Score: 211 bits (536), Expect = 2.390e-63
Identity = 102/131 (77.86%), Postives = 117/131 (89.31%), Query Frame = 1
Query:    1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLS 393
            +G PVIGLNDSGGARIQEG+DSLAGYADVFQ+NV ASG +PQ+SL+MG CAGGAVYSPAMTDFIFMV+R+SYMFVTGP VVKTVT EEVTQE LGGA +HT +SGVAH A++ND++ALRA R L  +LPLS
Sbjct:  150 VGAPVIGLNDSGGARIQEGIDSLAGYADVFQQNVIASGVVPQISLVMGPCAGGAVYSPAMTDFIFMVRRTSYMFVTGPDVVKTVTNEEVTQEELGGADTHTALSGVAHGAFENDVDALRATRALLDYLPLS 280          
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A5A8EFN3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EFN3_CAFRO)

HSP 1 Score: 211 bits (536), Expect = 3.190e-63
Identity = 104/131 (79.39%), Postives = 116/131 (88.55%), Query Frame = 1
Query:    1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLS 393
            +G PVIGLNDSGGARIQEGVDSLAGYA+VFQRNVDASG +PQL+LIMG CAGGAVYSPAMTDF FMV+ +SYMFVTGP VVKTVTQE VTQEVLGGA++HT+ SGV+H A+DND+EALR  RE   FLP S
Sbjct:  164 VGAPVIGLNDSGGARIQEGVDSLAGYAEVFQRNVDASGVVPQLTLIMGPCAGGAVYSPAMTDFTFMVRDTSYMFVTGPDVVKTVTQETVTQEVLGGAKTHTSKSGVSHLAFDNDVEALRGMREFVSFLPSS 294          
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A0S7KDL7_9TELE (PCCB (Fragment) n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KDL7_9TELE)

HSP 1 Score: 200 bits (509), Expect = 3.980e-63
Identity = 97/131 (74.05%), Postives = 115/131 (87.79%), Query Frame = 1
Query:    1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLS 393
            +G PVIGLNDSGGARIQEGV+SLAGYAD+F RNV ASG +PQ+SLIMG CAGGAVYSPA+TDF FMVK +SY+F+TGP VVK+VT E+VTQE LGGA++HTT+SGVAH A++ND+EAL   RE + FLPLS
Sbjct:   61 VGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVLASGVVPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTVSGVAHRAFENDVEALLNLREFFNFLPLS 191          
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A7S3LK18_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LK18_9STRA)

HSP 1 Score: 210 bits (534), Expect = 4.940e-63
Identity = 104/131 (79.39%), Postives = 117/131 (89.31%), Query Frame = 1
Query:    1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLS 393
            +G PVIGLNDSGGARIQEGVDSLAGYADVFQRNV+ASG IPQLS+IMG CAGGAVYSPA+TDFI MV+ +SYMFVTGP VVKTVT EEVTQE LGGA+SHT  SGV+H A+DND+EAL+  REL+ +LPLS
Sbjct:  152 VGAPVIGLNDSGGARIQEGVDSLAGYADVFQRNVEASGVIPQLSVIMGPCAGGAVYSPAITDFIMMVRDTSYMFVTGPEVVKTVTNEEVTQEELGGAKSHTQKSGVSHLAFDNDVEALKMTRELFDYLPLS 282          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY11_9PHAE1.270e-8499.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A812Z5R2_SYMMI1.090e-6980.92PccB protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A482RZS8_9ARCH1.820e-6981.82CoA carboxyltransferase N-terminal domain-containi... [more]
A0A482RCA6_9ARCH6.590e-6877.61CoA carboxyltransferase N-terminal domain-containi... [more]
A0A7S0SX47_9STRA3.050e-6677.44Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A836CAR6_9STRA7.870e-6583.08Propionyl-CoA carboxylase beta chain mitochondrial... [more]
A0A7S2RD78_9STRA2.390e-6377.86Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A5A8EFN3_CAFRO3.190e-6379.39Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A0S7KDL7_9TELE3.980e-6374.05PCCB (Fragment) n=2 Tax=Poeciliopsis prolifica Tax... [more]
A0A7S3LK18_9STRA4.940e-6379.39Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12474contigE-fasciculatus_F_contig12474:2984..3951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size404
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12474.1902.1prot_E-fasciculatus_F_contig12474.1902.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12474 2984..3805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927754.3658884-CDS-E-fasciculatus_F_contig12474:2983..31581622927754.3658884-CDS-E-fasciculatus_F_contig12474:2983..3158Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12474 2984..3158 -
1695995680.2729626-CDS-E-fasciculatus_F_contig12474:2983..31581695995680.2729626-CDS-E-fasciculatus_F_contig12474:2983..3158Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12474 2984..3158 -
1622927754.3787446-CDS-E-fasciculatus_F_contig12474:3722..38051622927754.3787446-CDS-E-fasciculatus_F_contig12474:3722..3805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12474 3723..3805 -
1695995680.2820938-CDS-E-fasciculatus_F_contig12474:3722..38051695995680.2820938-CDS-E-fasciculatus_F_contig12474:3722..3805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12474 3723..3805 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927754.3884444-UTR-E-fasciculatus_F_contig12474:3805..39511622927754.3884444-UTR-E-fasciculatus_F_contig12474:3805..3951Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12474 3806..3951 -
1695995680.2910457-UTR-E-fasciculatus_F_contig12474:3805..39511695995680.2910457-UTR-E-fasciculatus_F_contig12474:3805..3951Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12474 3806..3951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12474.1902.1

>prot_E-fasciculatus_F_contig12474.1902.1 ID=prot_E-fasciculatus_F_contig12474.1902.1|Name=mRNA_E-fasciculatus_F_contig12474.1902.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=86bp
MCGRGCVFSRYDGLYIHGEALFLHVCYRPGRGEDGHPGGSNAGGPRRGPI
AHHYVRGSARGLRQRPGGAAGGERAVRLPSFELQRR
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mRNA from alignment at E-fasciculatus_F_contig12474:2984..3951-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12474.1902.1 ID=mRNA_E-fasciculatus_F_contig12474.1902.1|Name=mRNA_E-fasciculatus_F_contig12474.1902.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=968bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12474:2984..3951- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGGGGTGCCCCGTGATTGGGCTGAATGACTCGGGAGGAGCGCGCATCCA AGAAGGGGTTGATTCGCTTGCCGGATACGCGGACGTTTTTCAACGCAACG TGGATGCTTCGGGGTCGATTCCGCAGCTGTCGTTGATCATGGGGGCATGT GCGGGAGGGGCTGTGTATTCTCCCGCTATGACGGACTTTATATTCATGGT GAAGCGCTCTTCCTACATGTTTGTTACAGGTATGCACTTGATGGTTTTGC TTGGTGAAAGTTGTGGGCGCGATTCTTCTGTATACCCCGTATTCTCTTTT GCTGAGGTTAACGGTCTGTTCTCGCCGTGGTGTATGTCTGCATCCGGTGC TGCGATGGTTTGCTTTGGGAGCCGGGGTTGAAATCATGTGTAGCGCCGGA GGGGCGGCGTATCTTCTGGCGATGACAAACTCCGTGTTCATTGCGGCAGG GTTGATCGTTTATGATCCGCATACTGTAGCAATGTCTGTTGCGATCTCTC GATTTCAATTTGATAGTCATATGTTGGTGTTGAATCTGCCAAGATTGGAC GCTAATCTAATCGCTGCTATTCTTGCTAGATTCCTGTTATGGCACTTTCT CTACAAATCGTGCGTCTTGTTTCATTAGAGTTTGCTTCTTGAAGTCCGCT AGTTTAGTGTTTCTTACTGTCGAAAGAAACGTATGCTGGCATAGCGCTGT TACCCATACCGTCGTTGATGTCTAAACAAAATATGGTTCTCTTCTTTGAT TATGTTACCTATTGGTTCTGTCGATAATCCTTGATGTTGTAAGGCCCGGG CGTGGTGAAGACGGTCACCCAGGAGGAAGTAACGCAGGAGGTCCTCGGAG GGGCCCAATCGCACACCACTATGTCCGGGGTAGCGCACGCGGCCTACGAC AACGACCTGGAGGCGCTGCGGGCGGCGAGAGAGCTGTACGGCTTCCTTCC TTTGAGCTGCAAAGGCGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12474:2984..3951-

>mRNA_E-fasciculatus_F_contig12474.1902.1 ID=mRNA_E-fasciculatus_F_contig12474.1902.1|Name=mRNA_E-fasciculatus_F_contig12474.1902.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=516bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12474:2984..3951- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGCGGGAGGGGCTGTGTATTCTCCCGCTATGACGGACTTTATATTCA
TGGTGAAGCGCTCTTCCTACATGTTTGTTACAGATGTGCGGGAGGGGCTG
TGTATTCTCCCGCTATGACGGACTTTATATTCATGGTGAAGCGCTCTTCC
TACATGTTTGTTACAGGCCCGGGCGTGGTGAAGACGGTCACCCAGGAGGA
AGTAACGCAGGAGGTCCTCGGAGGGGCCCAATCGCACACCACTATGTCCG
GGGTAGCGCACGCGGCCTACGACAACGACCTGGAGGCGCTGCGGGCGGCG
AGAGAGCTGTACGGCTTCCTTCCTTTGAGCTGCAAAGGCGAGCCCGGGCG
TGGTGAAGACGGTCACCCAGGAGGAAGTAACGCAGGAGGTCCTCGGAGGG
GCCCAATCGCACACCACTATGTCCGGGGTAGCGCACGCGGCCTACGACAA
CGACCTGGAGGCGCTGCGGGCGGCGAGAGAGCTGTACGGCTTCCTTCCTT
TGAGCTGCAAAGGCGA
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