mRNA_E-fasciculatus_F_contig12474.1902.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A6H5KY11_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY11_9PHAE) HSP 1 Score: 266 bits (679), Expect = 1.270e-84 Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 1
Query: 1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLSCKG 402
LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTT+SGVAHAAYDNDLEALRAARELYGFLPLSCKG
Sbjct: 146 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTVSGVAHAAYDNDLEALRAARELYGFLPLSCKG 279
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A812Z5R2_SYMMI (PccB protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z5R2_SYMMI) HSP 1 Score: 219 bits (557), Expect = 1.090e-69 Identity = 106/131 (80.92%), Postives = 121/131 (92.37%), Query Frame = 1
Query: 1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLS 393
+G PVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASG IPQ+S+IMG CAGGAVYSPAMTDFIFMV+R+SYMFVTGP VVKTVT E+VTQE LGGA++HT++SGVAH A+ ND+EALRA R+LY +LPL+
Sbjct: 55 VGAPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGVIPQISMIMGPCAGGAVYSPAMTDFIFMVQRTSYMFVTGPNVVKTVTMEDVTQEELGGAETHTSLSGVAHGAFANDVEALRALRQLYSYLPLN 185
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A482RZS8_9ARCH (CoA carboxyltransferase N-terminal domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZS8_9ARCH) HSP 1 Score: 215 bits (548), Expect = 1.820e-69 Identity = 108/132 (81.82%), Postives = 120/132 (90.91%), Query Frame = 1
Query: 4 GCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLSCK 399
G PVIGLNDSGGARIQEGVDSLAGYADVF RNVDASG IPQLSL+MG CAGGAVYSPAMTDFIFMV+R+S+MFVTGP VVKTVT EEVTQEVLGGA +HT++SGVAHAA+ ND+ ALR AREL+ +LPL+ K
Sbjct: 8 GAPVIGLNDSGGARIQEGVDSLAGYADVFLRNVDASGVIPQLSLVMGPCAGGAVYSPAMTDFIFMVQRTSHMFVTGPNVVKTVTGEEVTQEVLGGADTHTSVSGVAHAAFQNDVLALRGARELFEYLPLNNK 139
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A482RCA6_9ARCH (CoA carboxyltransferase N-terminal domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RCA6_9ARCH) HSP 1 Score: 216 bits (549), Expect = 6.590e-68 Identity = 104/134 (77.61%), Postives = 120/134 (89.55%), Query Frame = 1
Query: 1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLSCKG 402
+G PVIGLNDSGGARIQEGVDSLAGYA+VFQRNVDASG +PQ+S+IMG CAGGAVYSPAMTDF FMV+ +SYMFVTGP VVKTVT+E+VTQE LGGA++HT+ SGVAH ++DNDL+A+ A RE Y FLPLS KG
Sbjct: 167 VGVPVIGLNDSGGARIQEGVDSLAGYAEVFQRNVDASGYVPQISVIMGPCAGGAVYSPAMTDFTFMVRDTSYMFVTGPNVVKTVTREDVTQEELGGAKTHTSKSGVAHGSFDNDLDAIAALREFYNFLPLSAKG 300
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A7S0SX47_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SX47_9STRA) HSP 1 Score: 211 bits (538), Expect = 3.050e-66 Identity = 103/133 (77.44%), Postives = 119/133 (89.47%), Query Frame = 1
Query: 1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLSCK 399
+G PVIGLNDSGGARIQEG+DSL GYADVF +NV+ASG IPQ+S+IMG CAGGAVYSPAMTDFIFMVKRSSYMFVTGP VVKTVTQE+VTQE LGGA++HT++SGVAH A+DND+ AL REL+ +LPL+ K
Sbjct: 126 VGAPVIGLNDSGGARIQEGIDSLGGYADVFLKNVNASGIIPQISVIMGPCAGGAVYSPAMTDFIFMVKRSSYMFVTGPSVVKTVTQEDVTQEELGGAETHTSLSGVAHGAFDNDIIALEKIRELFQYLPLNNK 258
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A836CAR6_9STRA (Propionyl-CoA carboxylase beta chain mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR6_9STRA) HSP 1 Score: 214 bits (545), Expect = 7.870e-65 Identity = 108/130 (83.08%), Postives = 116/130 (89.23%), Query Frame = 1
Query: 4 GCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLS 393
G PVIGLNDSGGARIQEGVDSLAGYA+VFQRNVDASG IPQLSLIMG CAGGAVYSPA+TDFI MV+ SSYMFVTGP VVKTVTQE VTQE LGGA +H ++SGVAH A DNDL AL+AAREL+ FLPLS
Sbjct: 135 GAPVIGLNDSGGARIQEGVDSLAGYAEVFQRNVDASGLIPQLSLIMGPCAGGAVYSPALTDFIMMVRNSSYMFVTGPDVVKTVTQETVTQEALGGADTHCSVSGVAHVARDNDLAALKAARELFDFLPLS 264
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A7S2RD78_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RD78_9STRA) HSP 1 Score: 211 bits (536), Expect = 2.390e-63 Identity = 102/131 (77.86%), Postives = 117/131 (89.31%), Query Frame = 1
Query: 1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLS 393
+G PVIGLNDSGGARIQEG+DSLAGYADVFQ+NV ASG +PQ+SL+MG CAGGAVYSPAMTDFIFMV+R+SYMFVTGP VVKTVT EEVTQE LGGA +HT +SGVAH A++ND++ALRA R L +LPLS
Sbjct: 150 VGAPVIGLNDSGGARIQEGIDSLAGYADVFQQNVIASGVVPQISLVMGPCAGGAVYSPAMTDFIFMVRRTSYMFVTGPDVVKTVTNEEVTQEELGGADTHTALSGVAHGAFENDVDALRATRALLDYLPLS 280
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A5A8EFN3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EFN3_CAFRO) HSP 1 Score: 211 bits (536), Expect = 3.190e-63 Identity = 104/131 (79.39%), Postives = 116/131 (88.55%), Query Frame = 1
Query: 1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLS 393
+G PVIGLNDSGGARIQEGVDSLAGYA+VFQRNVDASG +PQL+LIMG CAGGAVYSPAMTDF FMV+ +SYMFVTGP VVKTVTQE VTQEVLGGA++HT+ SGV+H A+DND+EALR RE FLP S
Sbjct: 164 VGAPVIGLNDSGGARIQEGVDSLAGYAEVFQRNVDASGVVPQLTLIMGPCAGGAVYSPAMTDFTFMVRDTSYMFVTGPDVVKTVTQETVTQEVLGGAKTHTSKSGVSHLAFDNDVEALRGMREFVSFLPSS 294
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A0S7KDL7_9TELE (PCCB (Fragment) n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KDL7_9TELE) HSP 1 Score: 200 bits (509), Expect = 3.980e-63 Identity = 97/131 (74.05%), Postives = 115/131 (87.79%), Query Frame = 1
Query: 1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLS 393
+G PVIGLNDSGGARIQEGV+SLAGYAD+F RNV ASG +PQ+SLIMG CAGGAVYSPA+TDF FMVK +SY+F+TGP VVK+VT E+VTQE LGGA++HTT+SGVAH A++ND+EAL RE + FLPLS
Sbjct: 61 VGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVLASGVVPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTVSGVAHRAFENDVEALLNLREFFNFLPLS 191
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Match: A0A7S3LK18_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LK18_9STRA) HSP 1 Score: 210 bits (534), Expect = 4.940e-63 Identity = 104/131 (79.39%), Postives = 117/131 (89.31%), Query Frame = 1
Query: 1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYDNDLEALRAARELYGFLPLS 393
+G PVIGLNDSGGARIQEGVDSLAGYADVFQRNV+ASG IPQLS+IMG CAGGAVYSPA+TDFI MV+ +SYMFVTGP VVKTVT EEVTQE LGGA+SHT SGV+H A+DND+EAL+ REL+ +LPLS
Sbjct: 152 VGAPVIGLNDSGGARIQEGVDSLAGYADVFQRNVEASGVIPQLSVIMGPCAGGAVYSPAITDFIMMVRDTSYMFVTGPEVVKTVTNEEVTQEELGGAKSHTQKSGVSHLAFDNDVEALKMTRELFDYLPLS 282 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12474.1902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12474.1902.1 >prot_E-fasciculatus_F_contig12474.1902.1 ID=prot_E-fasciculatus_F_contig12474.1902.1|Name=mRNA_E-fasciculatus_F_contig12474.1902.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=86bp MCGRGCVFSRYDGLYIHGEALFLHVCYRPGRGEDGHPGGSNAGGPRRGPIback to top mRNA from alignment at E-fasciculatus_F_contig12474:2984..3951- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12474.1902.1 ID=mRNA_E-fasciculatus_F_contig12474.1902.1|Name=mRNA_E-fasciculatus_F_contig12474.1902.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=968bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12474:2984..3951- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12474:2984..3951- >mRNA_E-fasciculatus_F_contig12474.1902.1 ID=mRNA_E-fasciculatus_F_contig12474.1902.1|Name=mRNA_E-fasciculatus_F_contig12474.1902.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=516bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12474:2984..3951- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |