mRNA_E-fasciculatus_F_contig12413.1858.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12413.1858.1
Unique NamemRNA_E-fasciculatus_F_contig12413.1858.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12413.1858.1 vs. uniprot
Match: D8LDK8_ECTSI (Putative lipase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK8_ECTSI)

HSP 1 Score: 425 bits (1093), Expect = 2.000e-147
Identity = 199/244 (81.56%), Postives = 226/244 (92.62%), Query Frame = 1
Query:   82 MKPDLNTAKFSAQNAYFFASLCKMAYQPEQQVKGLVKGNSTNEGLGFDRFHWFDADKAAKRSVFDNIEDTEAFVAANDDLIAVVFRGTKEMTDWATNIDMNPRACAEVWGAPAAPGDVHEGFNEGVESVWDVRGNMRKVIQNLYNEKGKNRKLYIAGHSLGGALATVAAARLSYVDNLDIAGIYTIGSPKLLGRSAAAGFDARLNDGTPLKDKYFRCRNNNDVVTRVP--PGYNHVGTEIYLDR 807
            MKP+LNT KFS QNA++FASLCK+AY+PEQ+ KGLVKGNSTN+GLGFDRFHWFDAD+AAKRS FD I+DTEAFVAANDD++AVVFRGTKE+TDWATN+D++PR CAE W AP A G VHEGFNEGV+SVW+VRGNMRKVI+NLYNEKGK+RKLYIAGHSLGGALATVAAARLSY+DNLDIAG+YTIGSP+L   SAAAGFD+R+NDGTPLK+KYFRCRNNND+VTR+P  P Y HVGTEIYLDR
Sbjct:    1 MKPNLNTTKFSTQNAFYFASLCKIAYKPEQEAKGLVKGNSTNDGLGFDRFHWFDADEAAKRSSFDAIQDTEAFVAANDDMVAVVFRGTKELTDWATNLDISPRDCAEQWEAPDAVGAVHEGFNEGVDSVWEVRGNMRKVIKNLYNEKGKDRKLYIAGHSLGGALATVAAARLSYIDNLDIAGVYTIGSPRLFDPSAAAGFDSRMNDGTPLKEKYFRCRNNNDIVTRIPLPPSYEHVGTEIYLDR 244          
BLAST of mRNA_E-fasciculatus_F_contig12413.1858.1 vs. uniprot
Match: A0A6H5JMK4_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMK4_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 1.110e-92
Identity = 146/271 (53.87%), Postives = 188/271 (69.37%), Query Frame = 1
Query:   13 FARSDAVPAMPQRTTSAPIVKVEMKPDLNTAKFSAQNAYFFASLCKMAYQPEQQVKGLVKGNSTNEGLGFDRFHWFDADKAAKRSVFDNIEDTEAFVAANDDLIAVVFRGTKEMTDWATNIDMNPRACAEVWGAPAAPGDVHEGFNEGVESVW-----DVRGNMRKVIQNLYNEKGKNRKLYIAGHSLGGALATVAAARLSYVDNLDIAGIYTIGSPKLLGRSAAAGFDARLNDGTPLKDKYFRCRNNNDVVTRVPPG-YNHVGTEIYLDR 807
            F  ++A+P    + + +P  +V MKPDL+   FSA NA+FFA L K+AY  E + +GL+ GN+T  GLGFDRFHWF+  + A+++ F N+ DT+AFVAA+DD+IAVVFRGT  + DW TN  + P+ C + W  P   G VH GF++ V +VW          M + I +LYNEKGKNRKL+ AGHSLGGALAT AAAR++++D+LDIAGIYTIGSP+L  R A   FD R N G  LK+KYFRCRNN D V  VP   Y HVGTEIY+D+
Sbjct:   72 FDPTNAMPPHTWKISRSP--EVNMKPDLSAKGFSALNAFFFAGLSKIAYASEDEARGLLVGNATERGLGFDRFHWFEGGEEARKNPFGNLHDTDAFVAASDDIIAVVFRGTMGIADWYTNAKVQPKKCPQEWRVPPPGGTVHTGFDDAVGTVWLSTPSGQPTGMYQAIMDLYNEKGKNRKLFFAGHSLGGALATNAAARVAFIDDLDIAGIYTIGSPRLFNRVAGRHFDGRPNGGKTLKEKYFRCRNNKDPVPTVPKRPYVHVGTEIYIDK 340          
BLAST of mRNA_E-fasciculatus_F_contig12413.1858.1 vs. uniprot
Match: A0A6H5KWV7_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWV7_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 3.820e-91
Identity = 139/256 (54.30%), Postives = 187/256 (73.05%), Query Frame = 1
Query:   58 SAPIVKVEMKPDLNTAKFSAQNAYFFASLCKMAYQPEQQVKGLVKGNSTNEGLGFDRFHWFDADKAAK-RSVFDNIEDTEAFVAANDDLIAVVFRGTKEMTDWATNIDMNPRACAEVWGAPAAPGDVHEGFNEGVESVWDVRG----NMRKVIQNLYNEKGKNRKLYIAGHSLGGALATVAAARLSYVDNLDIAGIYTIGSPKLLGRSAAAGFDARLNDGTPLKDKYFRCRNNNDVVTRVP-PGYNHVGTEIYLDR 807
            SAP+ +VE+KPD+    FSAQN +FF+ + K+ Y P  +V+  ++G    +GLG++ FHWF+AD A    S++D I+DTEAFVAANDD+I VVFRG+ E+TDW TN ++  R     W       DVH+GF++ VE+VW+        MR +I+ L  E+GK+RKLY+AGHSLGGALATVAAARL+++D++ I+GIYTIGSP++ G + A  F+A++NDGT +KDKYFRCRNNND+VTR P   Y HVGTEIY DR
Sbjct:   51 SAPVSEVELKPDVKATSFSAQNGFFFSKMSKLVYSPRIEVESAMQGK---DGLGYEHFHWFEADPAVSGASIWDRIQDTEAFVAANDDVILVVFRGSSELTDWTTNFNLVRRLVPSDWLLDGLGCDVHQGFDDAVETVWNPGSAHPSGMRNIIKTLCKEEGKHRKLYLAGHSLGGALATVAAARLAFMDDVKISGIYTIGSPRVFGENMADRFNAKMNDGTRMKDKYFRCRNNNDLVTRGPLRPYKHVGTEIYFDR 303          
BLAST of mRNA_E-fasciculatus_F_contig12413.1858.1 vs. uniprot
Match: A0A6H5L4H8_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4H8_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 5.460e-76
Identity = 129/270 (47.78%), Postives = 170/270 (62.96%), Query Frame = 1
Query:   31 VPAMPQRTTSAPIVKVEMKPDLNTAKFSAQNAYFFASLCKMAYQPEQQVKGLVK-----GNSTNEGLGFDRFHWFDA-DKAAKRSVFDNIEDTEAFVAANDDLIAVVFRGTKEMTDWATNIDMNPRACAEVWGAPAAPGDVHEGFNEGVESVWDVRGN----MRKVIQNLYNEKGKNRKLYIAGHSLGGALATVAAARLSYVDNLDIAGIYTIGSPKLLGRSAAAGFDARLNDGTPLKDKYFRCRNNNDVVTRVPPG-YNHVGTEIYLDR 807
            VP +P  +      +VE K D +   FS QNAYF A +  + YQ + +V+  ++     G     G   D F WF+A D+   RS FD I DTEAFVAAND  I V FRG+    DW TN  + PR   + W      GD+H GF++GV +VW+        M  VI+  Y+E+G++RKLYI GHSLGGALAT+AAARL +VD+L++A +YTIGSP++     AA FD++ N GT +KDKYFRCRNNND+V+ +PP  Y HVGTE+Y DR
Sbjct:   11 VPIVPVYSAGDAEEEVEFKLDNDATAFSEQNAYFLARMSDLCYQSKDEVRSALETLSFWGKGAAAG---DNFQWFEANDEVVDRSSFDPIHDTEAFVAANDGAIVVAFRGSSGGRDWLTNFSILPRDIPKDWKLETTDGDLHRGFDDGVNTVWNPGPGHPEGMLAVIKRFYHEEGRSRKLYITGHSLGGALATIAAARLVFVDDLNVAALYTIGSPRVFDSEVAAIFDSKTNHGTRMKDKYFRCRNNNDIVSCIPPSPYKHVGTEVYFDR 277          
BLAST of mRNA_E-fasciculatus_F_contig12413.1858.1 vs. uniprot
Match: D8LDL1_ECTSI (Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL1_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 4.990e-48
Identity = 93/168 (55.36%), Postives = 117/168 (69.64%), Query Frame = 1
Query:  241 DADKAAK-RSVFDNIEDTEAFVAANDDLIAVVFRGTKEMTDWATNIDMNPRACAEVWGAPAAPGDVHEGFNEGVESVW--DVRGNMRKVIQNLYNEKGKNRKLYIAGHSLGGALATVAAARLSYVDNLDIAGIYTIGSPK-----------LLGRSAAAGFDARLNDG 702
            +AD A   RS+ D I DTEAFV ANDD+I VVFRGT+E+TDW TN++M  R+    W       D+H GF++GV++VW    +  M + I+NLYNE GK+RKLYIAGHSLGGALAT+AAARLS+VD+++IAGIYTIGSP+           LLGR +A  F   L DG
Sbjct:   59 EADPAVSGRSILDAIHDTEAFVTANDDMIVVVFRGTQELTDWTTNLNMGLRSARNEWKIDLEGCDLHRGFDDGVDTVWLPSSKNGMYQTIKNLYNEHGKSRKLYIAGHSLGGALATIAAARLSFVDDMNIAGIYTIGSPRGAISTSNVWDRLLGRMSAL-FRGELIDG 225          
BLAST of mRNA_E-fasciculatus_F_contig12413.1858.1 vs. uniprot
Match: UPI0016886C83 (Lipase family protein n=2 Tax=Leptolyngbya sp. FACHB-261 TaxID=2692806 RepID=UPI0016886C83)

HSP 1 Score: 138 bits (347), Expect = 2.500e-35
Identity = 89/235 (37.87%), Postives = 126/235 (53.62%), Query Frame = 1
Query:  109 FSAQNAYFFASLCKMAYQPEQQVKGLVKGNSTNEGLGFDRFHWFDADKAAKRSVFDNIEDTEAFVAANDDLIAVVFRGTKEMTDWATNIDMNPRACAEVWGAPAAPGDVHEGFNEGVESVWDVRGNMRKVIQNLYNEKGKNRKLYIAGHSLGGALATVAAARLSYVDNLDIAGIYTIGSPKLLGRSAAAGFDARLNDGTPLKDKYFRCRNNNDVVTRVPP---GYNHVGTEIYLD 804
            +S  NA+  A   ++AY     +    K        GF +          +R  F   +DT+AFVAAND ++ + FRGT +  DWATNI +  +   ++       G VHEGF E ++ VW       +V+  L   + KN+ L+I GHSLGGALAT+A ARL +     +AG+YT GSP+ +  + A  F+         K + FR  +NNDVVTRVPP   GY+HVGT +Y+D
Sbjct:   53 YSPINAFCLAKAAQLAYSDSPAIDAQTKL------WGFTK----------ERVRFCEDQDTQAFVAANDQIVVLSFRGTTDRNDWATNIGVAFKEETKI-------GKVHEGFLEALDCVWP------RVMTTLDAFQDKNQSLWITGHSLGGALATLATARLRFGLKRPVAGLYTFGSPRAVDEAFADTFNH------DFKAQTFRLVHNNDVVTRVPPRSFGYSHVGTFLYID 252          
BLAST of mRNA_E-fasciculatus_F_contig12413.1858.1 vs. uniprot
Match: UPI00068A2657 (lipase family protein n=1 Tax=Endozoicomonas numazuensis TaxID=1137799 RepID=UPI00068A2657)

HSP 1 Score: 132 bits (333), Expect = 2.710e-33
Identity = 90/267 (33.71%), Postives = 132/267 (49.44%), Query Frame = 1
Query:   37 AMPQRTTSAPIVKVEMKPDLNTAKFSAQNAYFFASLCKMAYQPEQQVKGLVKGNSTNEGLGFDRFHWFDADKAAKRSVFDNIEDTEAFVAANDDLIAVVFRGTK-EMTDWATNIDMNPRACAEVWGAPAAPGDVHEGFNEGVESVWDVRGNMRKVIQNLYNEKGKNRKLYIAGHSLGGALATVAAARLSYVDNLDIAGIYTIGSPKLLGRSAAAGFDARLNDGTP------LKDKYFRCRNNNDVVTRVPP---GYNHVGTEIYLDR 807
            A+P RT+S    K+  + +     FS  N    AS   +AY+   Q++ +++    N   G D F  +  D            D + F+  + + I + FRGT+ +  DW+ N D+      E W      G VH GF EG++SVW        + + L   +  ++ ++I GHSLGGALAT+AAA L + +NL +AG+Y+ G P+L  R     F    ++  P      L  + FRC NN D+VTRVPP   GY HVG  IY D 
Sbjct:    2 AIPSRTSS----KIARRFNHKARGFSKVNMACLASCSNIAYRTSDQIRQVLEFEGFNLS-GQDVFFEYRKDSMNP--------DIQGFIVGDSNKIIISFRGTESKFQDWSLNFDI----MREDWTPENNLGSVHRGFVEGLDSVWTT------IKERLTRLRNNHQSIWITGHSLGGALATLAAATLEFQENLPVAGVYSFGQPRLGNREFYRNFHDSEHNSAPNLFEKSLGKRTFRCVNNCDLVTRVPPQITGYRHVGHLIYFDH 245          
BLAST of mRNA_E-fasciculatus_F_contig12413.1858.1 vs. uniprot
Match: UPI000375BB5B (lipase family protein n=1 Tax=Pseudanabaena sp. PCC 6802 TaxID=118173 RepID=UPI000375BB5B)

HSP 1 Score: 127 bits (320), Expect = 6.600e-32
Identity = 81/241 (33.61%), Postives = 121/241 (50.21%), Query Frame = 1
Query:   97 NTAKFSAQNAYFFASLCKMAYQPEQQVKGLVKGNSTNEGLGFDRFHWFDADKAAKRSVFDNIEDTEAFVAANDDLIAVVFRGTKEMTDWATNIDMNPRACAEVWGAPAAPGDVHEGFNEGVESVW-DVRGNMRKVIQNLYNEKGKNRKLYIAGHSLGGALATVAAARLSYVDNLDIAGIYTIGSPKLLGRSAAAGFDARLNDGTPLKDKYFRCRNNNDVVTRVPP---GYNHVGTEIYLDR 807
            NT ++  QNA +     ++ Y   + ++      +     GF +F +FD             E T+AF  AND+L  V  RG++E+ DW TN   N     +  G     G VH+GFN+ +  V+ D+R       Q +   + K + L+  GHSLGGALAT+A A+L Y ++  + G+YT G P    RS    F+   N     K + FR  N+ND+V+R+PP    Y+HVGT +Y D 
Sbjct:    9 NTTRYEPQNALWLGQSARLVYSDSKTIQ------AETATWGFSKFRFFDK------------EGTQAFAIANDELAIVALRGSEEVIDWVTNAKFN---LVDGMG-----GKVHQGFNQALTLVYADIR-------QTITEFQDKGQSLWFTGHSLGGALATLAVAKLRYEEDKPVYGLYTYGQP----RSGDRNFERIFN--ADFKSRTFRFVNHNDIVSRIPPRSLSYSHVGTFLYFDE 210          
BLAST of mRNA_E-fasciculatus_F_contig12413.1858.1 vs. uniprot
Match: A0A1V4AQB0_9BACT (Lipase_3 domain-containing protein n=1 Tax=Candidatus Brocadia caroliniensis TaxID=1004156 RepID=A0A1V4AQB0_9BACT)

HSP 1 Score: 127 bits (319), Expect = 8.420e-32
Identity = 81/240 (33.75%), Postives = 125/240 (52.08%), Query Frame = 1
Query:   97 NTAKFSAQNAYFFASLCKMAYQPEQQVKGLVKGNSTNEGLGFDRFHWFDADKAAKRSVFDNIEDTEAFVAANDDLIAVVFRGTKEMTDWATNIDMNPRACAEVWGAPAAPGDVHEGFNEGVESVWDVRGNMRKVIQNLYNEKGKNRKLYIAGHSLGGALATVAAARLSYVDNLDIAGIYTIGSPKLLGRSAAAGFDARLNDGTPLKDKYFRCRNNNDVVTRVP---PGYNHVGTEIYLDR 807
            NT  +S +NAY+ +   ++AY+ E ++   +      +  GF+ F +++  K           DT+AF+A N +++ + FRGT  + DW T+I++      ++   P   G VHEGF+  + SVW      R +   + NE+ K R L+I GHSLG ALAT+A A+L    +  + G+YT G P+   R     FDA     T      FR   NND+V R+P     Y+HVGT  Y+D+
Sbjct:    9 NTRNYSLENAYWLSRASQLAYENESKISQGI------QAWGFNDFKYYEHKKL----------DTQAFIAGNQEMLMLAFRGTASLKDWMTDINI------DLINGP--DGKVHEGFSMAISSVW------RDIWSFIRNER-KGRALWITGHSLGAALATLAVAKLRLEKDEPVNGLYTFGQPRTGDREFQKNFDADFVSQT------FRFVYNNDIVARIPFRSMHYSHVGTFKYIDK 211          
BLAST of mRNA_E-fasciculatus_F_contig12413.1858.1 vs. uniprot
Match: UPI0007809BBD (lipase family protein n=1 Tax=Endozoicomonas arenosclerae TaxID=1633495 RepID=UPI0007809BBD)

HSP 1 Score: 128 bits (322), Expect = 1.010e-31
Identity = 91/260 (35.00%), Postives = 129/260 (49.62%), Query Frame = 1
Query:   64 PIVKVEMKPDLNTAKFSAQNAYFFASLCKMAYQPEQQVKGLVKGNSTNEGLGFDRFHWFDADKAAKRSVFDNIE-DTEAFVAANDDLIAVVFRGTK-EMTDWATNIDMNPRACAEVWGAPAAPGDVHEGFNEGVESVWD-VRGNMRKVIQNLYNEKGKNRKLYIAGHSLGGALATVAAARLSYVDNLDIAGIYTIGSPKLLGRSAAAGFDARLNDGTP------LKDKYFRCRNNNDVVTRVPP---GYNHVGTEIYLDR 807
            P  K+  + +     FS  N    AS   +AY+P  ++K  ++    N   G D F  F+  K       DN++ D + F+  +   I + FRGT+ +  DW+ N D+      E W      G VH GF EG++SVW  ++  + K+  N       N+ ++I GHSLGGALA +AAA +   +N  +AG+YT G P+L  R     F    N+  P      L  + FRC NN D+VTRVPP   GY HVG  IY D 
Sbjct:    2 PTSKIARRFNHKARGFSRINMACLASCSNIAYRPSDEIKKTLEFEGFNLS-GQDVF--FEYRK-------DNMDPDIQGFIVGDSKKIIISFRGTESKFEDWSLNFDI----MREDWVPNNNLGSVHRGFIEGLDSVWTTIKERLNKLSDN-------NQSIWITGHSLGGALAALAAATIELQENQPVAGVYTFGQPRLGNREFYRNFHDHENNAVPELFEKSLGKRTFRCVNNCDLVTRVPPQITGYRHVGHLIYFDH 240          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12413.1858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDK8_ECTSI2.000e-14781.56Putative lipase n=2 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JMK4_9PHAE1.110e-9253.87Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KWV7_9PHAE3.820e-9154.30Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5L4H8_9PHAE5.460e-7647.78Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
D8LDL1_ECTSI4.990e-4855.36Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
UPI0016886C832.500e-3537.87Lipase family protein n=2 Tax=Leptolyngbya sp. FAC... [more]
UPI00068A26572.710e-3333.71lipase family protein n=1 Tax=Endozoicomonas numaz... [more]
UPI000375BB5B6.600e-3233.61lipase family protein n=1 Tax=Pseudanabaena sp. PC... [more]
A0A1V4AQB0_9BACT8.420e-3233.75Lipase_3 domain-containing protein n=1 Tax=Candida... [more]
UPI0007809BBD1.010e-3135.00lipase family protein n=1 Tax=Endozoicomonas areno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12413contigE-fasciculatus_F_contig12413:537..3796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score428.3
Seed ortholog evalue2.6e-117
Seed eggNOG ortholog2880.D8LDK8
GOsGO:0005575,GO:0005576,GO:0005615,GO:0044421
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size813
Cds size813
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12413.1858.1prot_E-fasciculatus_F_contig12413.1858.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12413 537..3796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927747.7999184-CDS-E-fasciculatus_F_contig12413:536..6111622927747.7999184-CDS-E-fasciculatus_F_contig12413:536..611Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12413 537..611 +
1695995678.0141432-CDS-E-fasciculatus_F_contig12413:536..6111695995678.0141432-CDS-E-fasciculatus_F_contig12413:536..611Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12413 537..611 +
1622927747.813746-CDS-E-fasciculatus_F_contig12413:1196..13641622927747.813746-CDS-E-fasciculatus_F_contig12413:1196..1364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12413 1197..1364 +
1695995678.0281649-CDS-E-fasciculatus_F_contig12413:1196..13641695995678.0281649-CDS-E-fasciculatus_F_contig12413:1196..1364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12413 1197..1364 +
1622927747.8255618-CDS-E-fasciculatus_F_contig12413:1762..19601622927747.8255618-CDS-E-fasciculatus_F_contig12413:1762..1960Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12413 1763..1960 +
1695995678.0380666-CDS-E-fasciculatus_F_contig12413:1762..19601695995678.0380666-CDS-E-fasciculatus_F_contig12413:1762..1960Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12413 1763..1960 +
1622927747.8391705-CDS-E-fasciculatus_F_contig12413:2874..30831622927747.8391705-CDS-E-fasciculatus_F_contig12413:2874..3083Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12413 2875..3083 +
1695995678.0495179-CDS-E-fasciculatus_F_contig12413:2874..30831695995678.0495179-CDS-E-fasciculatus_F_contig12413:2874..3083Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12413 2875..3083 +
1622927747.8545868-CDS-E-fasciculatus_F_contig12413:3633..37961622927747.8545868-CDS-E-fasciculatus_F_contig12413:3633..3796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12413 3634..3796 +
1695995678.06069-CDS-E-fasciculatus_F_contig12413:3633..37961695995678.06069-CDS-E-fasciculatus_F_contig12413:3633..3796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12413 3634..3796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12413.1858.1

>prot_E-fasciculatus_F_contig12413.1858.1 ID=prot_E-fasciculatus_F_contig12413.1858.1|Name=mRNA_E-fasciculatus_F_contig12413.1858.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=271bp
AQANFARSDAVPAMPQRTTSAPIVKVEMKPDLNTAKFSAQNAYFFASLCK
MAYQPEQQVKGLVKGNSTNEGLGFDRFHWFDADKAAKRSVFDNIEDTEAF
VAANDDLIAVVFRGTKEMTDWATNIDMNPRACAEVWGAPAAPGDVHEGFN
EGVESVWDVRGNMRKVIQNLYNEKGKNRKLYIAGHSLGGALATVAAARLS
YVDNLDIAGIYTIGSPKLLGRSAAAGFDARLNDGTPLKDKYFRCRNNNDV
VTRVPPGYNHVGTEIYLDRL*
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mRNA from alignment at E-fasciculatus_F_contig12413:537..3796+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12413.1858.1 ID=mRNA_E-fasciculatus_F_contig12413.1858.1|Name=mRNA_E-fasciculatus_F_contig12413.1858.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3260bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12413:537..3796+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGCAGGCAAATTTTGCCCGCAGCGATGCTGTCCCAGCAATGCCGCAGCG CACTACTAGCGCTCCCATCGTTAAGGTATGCGATGGGGCCAGCAAGAGTC AAAATTGGCGTTCTGAGTACTGGAGATGCAGGCATTTTTTGTTCGTTTTC TCAGTGCCGGACCCTCGAGAAGGGTGGGAGGTCACGGCCATTTTGTTCAA TAACGAAGAAGGATGCTCCGAGCTACGTGCTTACGAATTTTTCCCCCATC ATAGGAGTTGCCTGTATTTCCCAACCTGTTGCGGAAAGAATCGGCGATGG GTTTTGCGTTCCTCCACGGGAGTGGCGCGATTAAGTCCCTTACGATATTC ACCGCCTGGCCAAGTGATATATCTAGAAGCAGTTCCGGATGCTGAAGCTT AGATTAGAATGAAAAGAAAGAGTAGGGCTGTACAAGCAACGTGTCGCGAT TGTTCACCACTCACCCCCTCGCCTTTCGCTGGCGCGGAGGTGACCTAGAG GTGATCAGCTCTCTGCTGCCACCACGTCGGGGTAATCAACTCAAAATGGG GTATTTCATATACCGAGGCCATGCGCCTCAATCTATCAACCCAACTCCCG AGTAGACCCGCCGAAGAATTTTCCTTGCGCTAACCCTCATCCGGCGATCT TTGACGACAGGTGGAGATGAAACCAGACTTGAACACTGCGAAATTCTCGG CCCAGAACGCGTATTTCTTCGCCAGCCTGTGCAAGATGGCCTACCAGCCG GAGCAGCAGGTCAAGGGGCTCGTGAAGGGCAACTCGACCAACGAAGGGCT GGGGTTCGATCGATTCCACTGGTTCGATGTGCGTCCGTAGCGTGAAACAG ACGTCGACAATATCATTTCCGTATGCGTCTCCGTAGCAGTGTCATTATGG CGGAGGTCGTGTAGTGCGAAGAGAAGCTCAATGAGCGATGGCCCATGGGG TAACGAGAAACGGTAGGACTCAAGCTTTTGACGACACGGCGAAGTGAATT TCGGGCGTGCTCCGGGAGCCTGTAGGAGTTTCTCCGATCAGCAAAGCTGT CACCGGCATGTTTGAGTACCAACCATTTGTGTGAGTGCCTGCAGAAAACA TGGACAGATGGGTCTGTCTGTATTCCAGATGACACCCTCCCCAACCCGAC AAAAAATGTTCTTCGGTCATTAACGATGTTTGTTTTTTCTCTGTTGGGCG GGGTGTGTTGATGTGGAGTCCACCAGGCGGACAAGGCAGCAAAAAGAAGT GTATTCGACAATATCGAAGACACGGAGGCCTTTGTCGCGGCGAACGACGA CCTTATCGCCGTCGTGTTCCGAGGCACAAAGGAGATGACGGACTGGGCGA CAAACATCGACATGAACCCGCGGGCCTGCGCGGAGGTGTGGGGGGCACCG GCAGCCCCGGGAGACGTCCACGAGGTTCGTTAACGGTGTTTGTGTGTTCT TTTGAAGAGGCATTATCGCTGCAAAAGCGGGTCGCATCTTTGACGCCAAC GTTAACTTACGAAGGCCAGGCTTTCCATGTCGGGGTTCCTCGACTCGAGT GCGTTGTCCACGAGGCACGGTGAGCTCGAGGTGTTGTTTGCGCTGGCTTT GACAGGCGCGTTCCTTTGACGGCTGAATCTCCCACTTTGATTCACATTGG AGCGACAACTCAAGCCATAATATTTTCCATTCTAGACAATGGCTTGGCCC GAAACTTGGAGTGCGAACCCTTTGATGGAAATGTATGAGCGGTATTCGTT GTGGACCACACGGGTGTTGTCGAGCGGTTTGGTCGTGTTCGAAGTGGCAA CCAAACATCTTGCACATTCCGCACTTTTTTGTGGAGCGTCTTGCCTACCG TTTCAAGTCCCGGATTTCCGGTGGTTTTCCCGGTACCTCGGAAGGCAACC AAACATCTGGCACGTTCCGCACCTTTTGTGGAGCGTCTTGCCTACCGTTT CAAGTCCCAGATTTCTGGTTGTTTTCCCGTTACCGCAGAAGGTGTCCGTG GTCCAAGTCAGCGTGAGATAACGCCCGTGCAGTATATGTAAGCGCAAGGA CAGTAACCACAGGACTCAGCAACGGCAACGTCCCGTGAGCCTGCTAGTAA CCGAGGTGCAACCCATGAACAGACAGGAAATTGATCAATCAGCTTGGTCG TCTTTGAGCAGCAACGGGATGGACAGGTGACACGTGCCCTCTTCATCAGC GGGTCAATGGTCAATATGCGCGGCATATCTCCGCGTCTGGATTTCGTATG ATTGTCGAGTGGGGACGAATCCAAATTTACTGCCGACAAGCCCTAACCGT TCGTTTTCGGCAAATCGCCTTGCCTGGTCCATAACTAGGGCTTCAACGAG GGTGTGGAATCCGTTTGGGACGTGCGCGGTAACATGCGCAAGGTCATCCA AAACCTCTACAACGAGAAGGGCAAGAACCGCAAGCTGTACATCGCCGGGC ACTCTCTTGGAGGCGCTCTGGCCACGGTCGCCGCGGCTCGCCTGTCGTAC GTTGACAACCTGGACATCGCTGGAATATATACCATCGGCAGCCCCAAGTG AGACGCCAGAATTCGAGCAAGACGGACGAGATCGATGCATGTGTGTGACG ACCATTTCACACCTGATCTCATAGTAGCGTCGAAGCGCGCTGGTCTGCCT GACATTTTTCAAAGGCCAAGCGGCGGTGTACATGACCAATAGCCAGCGCG AACGCCGTACCATGAGCTAAGAGTCATCAAGGTTGGTTGTGGTCGTTTTT TTCCCCGTCTTTATTTGCGCTTCAACACAACCCCAAACCTTGATTTCAGG AAACGCCTTTCGCAGTGTAAATTCGCGGGGGTTAGGCGAAAGTTCTGTTC AGTACTTCCTCTCACGCCCTGCCGCCTACGGCGAAATATCGATGACATGA CACCTGATTTGCCCGTGACATGTGTAACTCCAATTGTGCACTCTGCATTC GACCGAACGGAATACAAACATCGCCTACAGTGGATGTGCGTTCTCCTTCT TGCGCGTGGTCTCGTTATTGTCCAATCCCCCGGAAGAACATAAACAAGCT ATGTTTTGCTCCGTTTTCCCGCTCGCCTTGCTCACGCGTCTTGGTAGGCT ATTGGGCCGGTCAGCCGCCGCTGGGTTTGACGCCAGGTTGAACGACGGTA CCCCGCTGAAGGACAAGTACTTCCGCTGCAGGAACAACAACGACGTCGTC ACGCGGGTTCCGCCTGGCTACAACCATGTCGGCACGGAGATCTACCTCGA TCGATTGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12413:537..3796+

>mRNA_E-fasciculatus_F_contig12413.1858.1 ID=mRNA_E-fasciculatus_F_contig12413.1858.1|Name=mRNA_E-fasciculatus_F_contig12413.1858.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1626bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12413:537..3796+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGCAGGCAAATTTTGCCCGCAGCGATGCTGTCCCAGCAATGCCGCAGCG
CACTACTAGCGCTCCCATCGTTAAGGCGCAGGCAAATTTTGCCCGCAGCG
ATGCTGTCCCAGCAATGCCGCAGCGCACTACTAGCGCTCCCATCGTTAAG
GTGGAGATGAAACCAGACTTGAACACTGCGAAATTCTCGGCCCAGAACGC
GTATTTCTTCGCCAGCCTGTGCAAGATGGCCTACCAGCCGGAGCAGCAGG
TCAAGGGGCTCGTGAAGGGCAACTCGACCAACGAAGGGCTGGGGTTCGAT
CGATTCCACTGGTTCGATGTGGAGATGAAACCAGACTTGAACACTGCGAA
ATTCTCGGCCCAGAACGCGTATTTCTTCGCCAGCCTGTGCAAGATGGCCT
ACCAGCCGGAGCAGCAGGTCAAGGGGCTCGTGAAGGGCAACTCGACCAAC
GAAGGGCTGGGGTTCGATCGATTCCACTGGTTCGATGCGGACAAGGCAGC
AAAAAGAAGTGTATTCGACAATATCGAAGACACGGAGGCCTTTGTCGCGG
CGAACGACGACCTTATCGCCGTCGTGTTCCGAGGCACAAAGGAGATGACG
GACTGGGCGACAAACATCGACATGAACCCGCGGGCCTGCGCGGAGGTGTG
GGGGGCACCGGCAGCCCCGGGAGACGTCCACGAGGCGGACAAGGCAGCAA
AAAGAAGTGTATTCGACAATATCGAAGACACGGAGGCCTTTGTCGCGGCG
AACGACGACCTTATCGCCGTCGTGTTCCGAGGCACAAAGGAGATGACGGA
CTGGGCGACAAACATCGACATGAACCCGCGGGCCTGCGCGGAGGTGTGGG
GGGCACCGGCAGCCCCGGGAGACGTCCACGAGGGCTTCAACGAGGGTGTG
GAATCCGTTTGGGACGTGCGCGGTAACATGCGCAAGGTCATCCAAAACCT
CTACAACGAGAAGGGCAAGAACCGCAAGCTGTACATCGCCGGGCACTCTC
TTGGAGGCGCTCTGGCCACGGTCGCCGCGGCTCGCCTGTCGTACGTTGAC
AACCTGGACATCGCTGGAATATATACCATCGGCAGCCCCAAGGCTTCAAC
GAGGGTGTGGAATCCGTTTGGGACGTGCGCGGTAACATGCGCAAGGTCAT
CCAAAACCTCTACAACGAGAAGGGCAAGAACCGCAAGCTGTACATCGCCG
GGCACTCTCTTGGAGGCGCTCTGGCCACGGTCGCCGCGGCTCGCCTGTCG
TACGTTGACAACCTGGACATCGCTGGAATATATACCATCGGCAGCCCCAA
GCTATTGGGCCGGTCAGCCGCCGCTGGGTTTGACGCCAGGTTGAACGACG
GTACCCCGCTGAAGGACAAGTACTTCCGCTGCAGGAACAACAACGACGTC
GTCACGCGGGTTCCGCCTGGCTACAACCATGTCGGCACGGAGATCTACCT
CGATCGATTGTGAGCTATTGGGCCGGTCAGCCGCCGCTGGGTTTGACGCC
AGGTTGAACGACGGTACCCCGCTGAAGGACAAGTACTTCCGCTGCAGGAA
CAACAACGACGTCGTCACGCGGGTTCCGCCTGGCTACAACCATGTCGGCA
CGGAGATCTACCTCGATCGATTGTGA
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