mRNA_E-fasciculatus_F_contig12380.1833.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12380.1833.1
Unique NamemRNA_E-fasciculatus_F_contig12380.1833.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: D8LM07_ECTSI (Inosine-adenosine-guanosine-nucleoside hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM07_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 4.530e-54
Identity = 96/108 (88.89%), Postives = 99/108 (91.67%), Query Frame = 1
Query:   67 MSSMAAAAVCSPQSTLMRTP--VYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFPD 384
            MSSMAAAAVCSP STL RTP  VYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWW VGAAATRK+LR LSKKHASS  SSGAAEGRIPVAESTL+G+N FPD
Sbjct:    1 MSSMAAAAVCSPHSTL-RTPRPVYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWKVGAAATRKILRTLSKKHASSSSSSGAAEGRIPVAESTLDGVNTFPD 107          
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: A0A6H5JPH9_9PHAE (IU_nuc_hydro domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.200e-21
Identity = 53/73 (72.60%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  184 KHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSS------GAAEGRIPVAESTLNGLNAFPD 384
            ++ +RFDLLGVSVTPANSWW VGAAATRK+L  LSKKH S XX        GA EGRIPVAESTLNG+NAFPD
Sbjct:   30 ENPDRFDLLGVSVTPANSWWKVGAAATRKILWTLSKKHTSXXXXXXXXXXXGATEGRIPVAESTLNGVNAFPD 102          
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: A0A3D0CWA6_9CHLR (Nucleoside hydrolase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3D0CWA6_9CHLR)

HSP 1 Score: 67.0 bits (162), Expect = 5.940e-12
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  112 LMRTPVYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFP 381
            + R  V LDHDGG DDY+A + LL +  +F+ LG+ VTP + +     +ATRK+L ++ + H             +PVA ST+ GLN FP
Sbjct:    1 MSRDLVILDHDGGVDDYLATMLLLSYR-QFEPLGIVVTPGDCYINAAVSATRKLLDLMGQSH-------------VPVARSTVRGLNPFP 76          
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: A0A1Z4K6Q8_9CYAN (Inosine/uridine-preferring nucleoside hydrolase n=4 Tax=Nostocales TaxID=1161 RepID=A0A1Z4K6Q8_9CYAN)

HSP 1 Score: 68.9 bits (167), Expect = 2.800e-11
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  127 VYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFP 381
            V +DHDGG DDY+A + LL  +N  +LLG+ VTPA+ +     +ATRK+L ++   H             IPVAEST+ G+NAFP
Sbjct:    6 VLMDHDGGVDDYLATMLLLTMDN-VELLGIVVTPADCYVQPAVSATRKILDLMGFSH-------------IPVAESTVRGINAFP 76          
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: A0A2S0Q9I6_NODSP (Purine nucleosidase n=1 Tax=Nodularia spumigena UHCC 0039 TaxID=1914872 RepID=A0A2S0Q9I6_NODSP)

HSP 1 Score: 65.5 bits (158), Expect = 4.780e-11
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  127 VYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFP 381
            V +DHDGG DDY+A + LL  ++  +LLG+ VTPA+ +     +ATRK+L ++   H             IPVAEST+ G+N FP
Sbjct:    6 VLMDHDGGVDDYLATMLLLTMDH-IELLGIVVTPADCYIQPAVSATRKILDLMEFSH-------------IPVAESTVRGINPFP 76          
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: A0A1Z4R4V0_9CYAN (Inosine/uridine-preferring nucleoside hydrolase n=1 Tax=Calothrix sp. NIES-4101 TaxID=2005461 RepID=A0A1Z4R4V0_9CYAN)

HSP 1 Score: 68.2 bits (165), Expect = 5.300e-11
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  115 MRTPVYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFPD 384
            M+  V LDHDG  DD++A + L+  E+  + LGV VTPA+ +     +ATRK+L ++ K H             IPVAEST+ G+NAFP+
Sbjct:    1 MKQQVLLDHDGAVDDFLATMLLMTMEH-IEPLGVIVTPADCYIQPAVSATRKILDLMGKSH-------------IPVAESTIRGINAFPN 76          
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: A0A0V7ZZA1_9CYAN (Nucleoside hydrolase n=1 Tax=Mastigocoleus testarum BC008 TaxID=371196 RepID=A0A0V7ZZA1_9CYAN)

HSP 1 Score: 68.2 bits (165), Expect = 5.340e-11
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  127 VYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFP 381
            V +DHDGG DDY+A + LL   N+++L+GV VTPA+ +     +ATRK+L ++   H             IPVAES + G+NAFP
Sbjct:    6 VLMDHDGGVDDYLATM-LLMTMNQYELIGVVVTPADCYIQPAVSATRKILDLMGGSH-------------IPVAESNVRGINAFP 76          
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: UPI001C77B7AB (Inosine-adenosine-guanosine-nucleoside hydrolase n=2 Tax=Richelia TaxID=98443 RepID=UPI001C77B7AB)

HSP 1 Score: 67.0 bits (162), Expect = 1.410e-10
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  127 VYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFP 381
            V +DHDGG DDY+A + LL  E+  +LLGV VTPA+ +     +ATRK++ ++   H             IPVAEST+ G+N FP
Sbjct:    7 VLMDHDGGVDDYLATMLLLTMEH-IELLGVVVTPADCYIPAAVSATRKIIDLMGFSH-------------IPVAESTVRGINPFP 77          
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: A0A4P2PY85_SORCE (Purine nucleosidase n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A4P2PY85_SORCE)

HSP 1 Score: 66.6 bits (161), Expect = 1.930e-10
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  118 RTPVYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFP 381
            RT V +DHDGG DDY+A + L+  ++  D+LGV VTPA+ +     +ATRK+L ++ +               +PVAEST+ GLN FP
Sbjct:    3 RTLVLMDHDGGVDDYLAAILLMTMDH-VDVLGVVVTPADCYIRPAVSATRKILDLVGRHD-------------VPVAESTVRGLNPFP 76          
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: A0A150RXR7_SORCE (Nucleoside hydrolase n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150RXR7_SORCE)

HSP 1 Score: 66.6 bits (161), Expect = 1.930e-10
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  112 LMRTPVYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFP 381
            + RT V +DHDGG DDY+A + L+  ++  D+LG+ VTPA+ +     +ATRK+L ++ +               +PVAEST+ GLN FP
Sbjct:    1 MTRTCVLMDHDGGVDDYIATLLLMTMDH-VDVLGIVVTPADCYIQPAVSATRKILDLVGRHD-------------VPVAESTVRGLNPFP 76          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM07_ECTSI4.530e-5488.89Inosine-adenosine-guanosine-nucleoside hydrolase n... [more]
A0A6H5JPH9_9PHAE1.200e-2172.60IU_nuc_hydro domain-containing protein n=1 Tax=Ect... [more]
A0A3D0CWA6_9CHLR5.940e-1240.00Nucleoside hydrolase (Fragment) n=1 Tax=Chloroflex... [more]
A0A1Z4K6Q8_9CYAN2.800e-1144.71Inosine/uridine-preferring nucleoside hydrolase n=... [more]
A0A2S0Q9I6_NODSP4.780e-1142.35Purine nucleosidase n=1 Tax=Nodularia spumigena UH... [more]
A0A1Z4R4V0_9CYAN5.300e-1142.22Inosine/uridine-preferring nucleoside hydrolase n=... [more]
A0A0V7ZZA1_9CYAN5.340e-1143.53Nucleoside hydrolase n=1 Tax=Mastigocoleus testaru... [more]
UPI001C77B7AB1.410e-1043.53Inosine-adenosine-guanosine-nucleoside hydrolase n... [more]
A0A4P2PY85_SORCE1.930e-1042.05Purine nucleosidase n=1 Tax=Sorangium cellulosum T... [more]
A0A150RXR7_SORCE1.930e-1040.00Nucleoside hydrolase n=1 Tax=Sorangium cellulosum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12380contigE-fasciculatus_F_contig12380:24..1103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue6.3e-45
Seed eggNOG ortholog2880.D8LM07
KEGG rclassRC00033,RC00063,RC00122,RC00318,RC00485
KEGG koko:K01239
KEGG ReactionR01245,R01273,R01677,R01770,R02143
KEGG Pathwayko00230,ko00760,ko01100,map00230,map00760,map01100
EggNOG free text desc.purine nucleosidase activity
EggNOG OGsCOG1957@1,KOG2938@2759
EC3.2.2.1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorymitochondrion
Exons2
Model size384
Cds size384
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927744.4760568-CDS-E-fasciculatus_F_contig12380:23..2101622927744.4760568-CDS-E-fasciculatus_F_contig12380:23..210Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12380 24..210 -
1695995676.3148766-CDS-E-fasciculatus_F_contig12380:23..2101695995676.3148766-CDS-E-fasciculatus_F_contig12380:23..210Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12380 24..210 -
1622927744.4919932-CDS-E-fasciculatus_F_contig12380:906..11031622927744.4919932-CDS-E-fasciculatus_F_contig12380:906..1103Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12380 907..1103 -
1695995676.325276-CDS-E-fasciculatus_F_contig12380:906..11031695995676.325276-CDS-E-fasciculatus_F_contig12380:906..1103Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12380 907..1103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12380.1833.1prot_E-fasciculatus_F_contig12380.1833.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12380 24..1103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12380.1833.1

>prot_E-fasciculatus_F_contig12380.1833.1 ID=prot_E-fasciculatus_F_contig12380.1833.1|Name=mRNA_E-fasciculatus_F_contig12380.1833.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=128bp
MLIVHPCRGYVVARALSLGGTSMSSMAAAAVCSPQSTLMRTPVYLDHDGG
NDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHA
SSSSSSGAAEGRIPVAESTLNGLNAFPD
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mRNA from alignment at E-fasciculatus_F_contig12380:24..1103-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12380.1833.1 ID=mRNA_E-fasciculatus_F_contig12380.1833.1|Name=mRNA_E-fasciculatus_F_contig12380.1833.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1080bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12380:24..1103- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGATTGTTCATCCTTGTCGTGGATACGTTGTCGCAAGAGCTCTCTC CTTGGGTGGAACGTCCATGTCGTCAATGGCAGCAGCAGCAGTATGCTCAC CCCAGTCGACACTGATGCGGACACCTGTGTACTTGGATCATGACGGTGGA AATGACGACTACGTGGCGTTGGTGTACCTCTTGAAGCACGAAAACAGGTA AGTTGGGGTGGCTATGGTGGTCAGGGGAGCTGAGCATCGCAGAGCGGCGA CGGCTGCGCAGCAAGCAACTGGTTAGAGGTTAGAGGGACGATTGCAGTGT CTACGGAAATCTACGAAATCTACGGAAACTACGAATTCTACGAAAAAGCA AATTGGAAAGTACATAGTATAAGAGAGATCGGGTCCTCCATACTCCATAC TCGTCATACGTTGTATGATTCGGGTGTGAGTTTTGTTGCGTGCGTGCCGT GCGCACCTGTTGTACAAATGAGGTGTGCTGATGCTGCCTCCCGCCGTTTA ACCCAAAAAACTAAACATGCAAGAAAAAAGCGGCGCAATACCAGTGCGAG CAAGGAAGAAAGTTTTAAGTTTTGCGCAAGGGCTTCGGACAACAGAACAC CGGCGGAATACCTAATACCTCGTGTTTGTGCAGAAAGAGTTGACTTGCTT TTATAGGTACGCCCCCGGTCGAAAAAAGTCTCAAAATCTCCGCCTGTGAG GGGCTGGCCGAGAAGGGGGTCCCGGTTTTTGCATACAACATGCATGCAGG TTCCGAAGACAAAGAGCGGCTGCTACATTAGGAAATCATCCAGCTATCTA TCTATCTATGCCATGGAAACAAGGCGTCAGACACCGCCGCGCTCCCTGTC TCAATTCCCCAATCGGGTGGCGCCTCGCGCACATCGTCAACAGGTTTGAT CTCCTGGGGGTGTCGGTCACGCCAGCGAACTCGTGGTGGACGGTGGGTGC GGCAGCCACCCGAAAGGTCTTGCGGATTCTCTCCAAGAAGCACGCCTCCT CCTCCTCCTCCTCCGGTGCTGCCGAAGGGCGGATTCCCGTTGCGGAGTCC ACGCTGAATGGCTTAAACGCCTTCCCAGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12380:24..1103-

>mRNA_E-fasciculatus_F_contig12380.1833.1 ID=mRNA_E-fasciculatus_F_contig12380.1833.1|Name=mRNA_E-fasciculatus_F_contig12380.1833.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12380:24..1103- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGATTGTTCATCCTTGTCGTGGATACGTTGTCGCAAGAGCTCTCTC
CTTGGGTGGAACGTCCATGTCGTCAATGGCAGCAGCAGCAGTATGCTCAC
CCCAGTCGACACTGATGCGGACACCTGTGTACTTGGATCATGACGGTGGA
AATGACGACTACGTGGCGTTGGTGTACCTCTTGAAGCACGAAAACAGATG
TTGATTGTTCATCCTTGTCGTGGATACGTTGTCGCAAGAGCTCTCTCCTT
GGGTGGAACGTCCATGTCGTCAATGGCAGCAGCAGCAGTATGCTCACCCC
AGTCGACACTGATGCGGACACCTGTGTACTTGGATCATGACGGTGGAAAT
GACGACTACGTGGCGTTGGTGTACCTCTTGAAGCACGAAAACAGGTTTGA
TCTCCTGGGGGTGTCGGTCACGCCAGCGAACTCGTGGTGGACGGTGGGTG
CGGCAGCCACCCGAAAGGTCTTGCGGATTCTCTCCAAGAAGCACGCCTCC
TCCTCCTCCTCCTCCGGTGCTGCCGAAGGGCGGATTCCCGTTGCGGAGTC
CACGCTGAATGGCTTAAACGCCTTCCCAGACGTTTGATCTCCTGGGGGTG
TCGGTCACGCCAGCGAACTCGTGGTGGACGGTGGGTGCGGCAGCCACCCG
AAAGGTCTTGCGGATTCTCTCCAAGAAGCACGCCTCCTCCTCCTCCTCCT
CCGGTGCTGCCGAAGGGCGGATTCCCGTTGCGGAGTCCACGCTGAATGGC
TTAAACGCCTTCCCAGAC
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