mRNA_E-fasciculatus_F_contig12380.1833.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: D8LM07_ECTSI (Inosine-adenosine-guanosine-nucleoside hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM07_ECTSI) HSP 1 Score: 183 bits (464), Expect = 4.530e-54 Identity = 96/108 (88.89%), Postives = 99/108 (91.67%), Query Frame = 1
Query: 67 MSSMAAAAVCSPQSTLMRTP--VYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFPD 384
MSSMAAAAVCSP STL RTP VYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWW VGAAATRK+LR LSKKHASS SSGAAEGRIPVAESTL+G+N FPD
Sbjct: 1 MSSMAAAAVCSPHSTL-RTPRPVYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWKVGAAATRKILRTLSKKHASSSSSSGAAEGRIPVAESTLDGVNTFPD 107
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: A0A6H5JPH9_9PHAE (IU_nuc_hydro domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH9_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 1.200e-21 Identity = 53/73 (72.60%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 184 KHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSS------GAAEGRIPVAESTLNGLNAFPD 384
++ +RFDLLGVSVTPANSWW VGAAATRK+L LSKKH S XX GA EGRIPVAESTLNG+NAFPD
Sbjct: 30 ENPDRFDLLGVSVTPANSWWKVGAAATRKILWTLSKKHTSXXXXXXXXXXXGATEGRIPVAESTLNGVNAFPD 102
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: A0A3D0CWA6_9CHLR (Nucleoside hydrolase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3D0CWA6_9CHLR) HSP 1 Score: 67.0 bits (162), Expect = 5.940e-12 Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 1
Query: 112 LMRTPVYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFP 381
+ R V LDHDGG DDY+A + LL + +F+ LG+ VTP + + +ATRK+L ++ + H +PVA ST+ GLN FP
Sbjct: 1 MSRDLVILDHDGGVDDYLATMLLLSYR-QFEPLGIVVTPGDCYINAAVSATRKLLDLMGQSH-------------VPVARSTVRGLNPFP 76
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: A0A1Z4K6Q8_9CYAN (Inosine/uridine-preferring nucleoside hydrolase n=4 Tax=Nostocales TaxID=1161 RepID=A0A1Z4K6Q8_9CYAN) HSP 1 Score: 68.9 bits (167), Expect = 2.800e-11 Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query: 127 VYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFP 381
V +DHDGG DDY+A + LL +N +LLG+ VTPA+ + +ATRK+L ++ H IPVAEST+ G+NAFP
Sbjct: 6 VLMDHDGGVDDYLATMLLLTMDN-VELLGIVVTPADCYVQPAVSATRKILDLMGFSH-------------IPVAESTVRGINAFP 76
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: A0A2S0Q9I6_NODSP (Purine nucleosidase n=1 Tax=Nodularia spumigena UHCC 0039 TaxID=1914872 RepID=A0A2S0Q9I6_NODSP) HSP 1 Score: 65.5 bits (158), Expect = 4.780e-11 Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 1
Query: 127 VYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFP 381
V +DHDGG DDY+A + LL ++ +LLG+ VTPA+ + +ATRK+L ++ H IPVAEST+ G+N FP
Sbjct: 6 VLMDHDGGVDDYLATMLLLTMDH-IELLGIVVTPADCYIQPAVSATRKILDLMEFSH-------------IPVAESTVRGINPFP 76
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: A0A1Z4R4V0_9CYAN (Inosine/uridine-preferring nucleoside hydrolase n=1 Tax=Calothrix sp. NIES-4101 TaxID=2005461 RepID=A0A1Z4R4V0_9CYAN) HSP 1 Score: 68.2 bits (165), Expect = 5.300e-11 Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 1
Query: 115 MRTPVYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFPD 384
M+ V LDHDG DD++A + L+ E+ + LGV VTPA+ + +ATRK+L ++ K H IPVAEST+ G+NAFP+
Sbjct: 1 MKQQVLLDHDGAVDDFLATMLLMTMEH-IEPLGVIVTPADCYIQPAVSATRKILDLMGKSH-------------IPVAESTIRGINAFPN 76
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: A0A0V7ZZA1_9CYAN (Nucleoside hydrolase n=1 Tax=Mastigocoleus testarum BC008 TaxID=371196 RepID=A0A0V7ZZA1_9CYAN) HSP 1 Score: 68.2 bits (165), Expect = 5.340e-11 Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 1
Query: 127 VYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFP 381
V +DHDGG DDY+A + LL N+++L+GV VTPA+ + +ATRK+L ++ H IPVAES + G+NAFP
Sbjct: 6 VLMDHDGGVDDYLATM-LLMTMNQYELIGVVVTPADCYIQPAVSATRKILDLMGGSH-------------IPVAESNVRGINAFP 76
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: UPI001C77B7AB (Inosine-adenosine-guanosine-nucleoside hydrolase n=2 Tax=Richelia TaxID=98443 RepID=UPI001C77B7AB) HSP 1 Score: 67.0 bits (162), Expect = 1.410e-10 Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 1
Query: 127 VYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFP 381
V +DHDGG DDY+A + LL E+ +LLGV VTPA+ + +ATRK++ ++ H IPVAEST+ G+N FP
Sbjct: 7 VLMDHDGGVDDYLATMLLLTMEH-IELLGVVVTPADCYIPAAVSATRKIIDLMGFSH-------------IPVAESTVRGINPFP 77
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: A0A4P2PY85_SORCE (Purine nucleosidase n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A4P2PY85_SORCE) HSP 1 Score: 66.6 bits (161), Expect = 1.930e-10 Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 1
Query: 118 RTPVYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFP 381
RT V +DHDGG DDY+A + L+ ++ D+LGV VTPA+ + +ATRK+L ++ + +PVAEST+ GLN FP
Sbjct: 3 RTLVLMDHDGGVDDYLAAILLMTMDH-VDVLGVVVTPADCYIRPAVSATRKILDLVGRHD-------------VPVAESTVRGLNPFP 76
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Match: A0A150RXR7_SORCE (Nucleoside hydrolase n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150RXR7_SORCE) HSP 1 Score: 66.6 bits (161), Expect = 1.930e-10 Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 1
Query: 112 LMRTPVYLDHDGGNDDYVALVYLLKHENRFDLLGVSVTPANSWWTVGAAATRKVLRILSKKHASSXXSSGAAEGRIPVAESTLNGLNAFP 381
+ RT V +DHDGG DDY+A + L+ ++ D+LG+ VTPA+ + +ATRK+L ++ + +PVAEST+ GLN FP
Sbjct: 1 MTRTCVLMDHDGGVDDYIATLLLMTMDH-VDVLGIVVTPADCYIQPAVSATRKILDLVGRHD-------------VPVAESTVRGLNPFP 76 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12380.1833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12380.1833.1 >prot_E-fasciculatus_F_contig12380.1833.1 ID=prot_E-fasciculatus_F_contig12380.1833.1|Name=mRNA_E-fasciculatus_F_contig12380.1833.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=128bp MLIVHPCRGYVVARALSLGGTSMSSMAAAAVCSPQSTLMRTPVYLDHDGGback to top mRNA from alignment at E-fasciculatus_F_contig12380:24..1103- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12380.1833.1 ID=mRNA_E-fasciculatus_F_contig12380.1833.1|Name=mRNA_E-fasciculatus_F_contig12380.1833.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1080bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12380:24..1103- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12380:24..1103- >mRNA_E-fasciculatus_F_contig12380.1833.1 ID=mRNA_E-fasciculatus_F_contig12380.1833.1|Name=mRNA_E-fasciculatus_F_contig12380.1833.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12380:24..1103- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |