mRNA_E-fasciculatus_F_contig1236.1819.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1236.1819.1 vs. uniprot
Match: D7FJW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW1_ECTSI) HSP 1 Score: 698 bits (1801), Expect = 4.500e-245 Identity = 432/548 (78.83%), Postives = 438/548 (79.93%), Query Frame = 1
Query: 16 AHRCAQGAEDAVRKGDHAEATELHLAAARDFLRAAEQARKNGRVQEHGVLASSLLLLADSHAARAEKGAIRLRLSGEGRGSLNSSLSSSRDLTPAEAYRAAATGVKAAGKGDGRRENVVXXXXXXXXHSVGPDMDDSIMRGTAATGNAVEAKGGGVDAAAELAKKFRPQRDDLLELERQLAKLGLESKMGGPGGRARQRHPSVGAPQLSSPLGDSFFFLNKSVIFGGPGTGGNGLVAIGGPANAYGNGNGPAAGIVLGSPGTRLGVATSPGGGGG--RSTSAPRRFNESDASPEGEPLMTSGRR-------TRADGRVADGA-------------------QGGGNGADRPLTGGGGAWTGESVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQQGEIMRLLTCLKTLGDENVFLMKECEDRDKASASTAVRQESKSIREEMKRFQLKYHERFTLLKKTLDEVMRSYPQLAAPGTASAAGGASTSDPAKTAEEVQRLTQTNRKLTEQVKKYENYYKELCLKAESKRKEQLSQAKAARXXXXXHHPSF 1575
AHRCAQGAEDA RKGDHAEATELHLAAARDFLRAAEQ VQEHGVLASSLLLLADSHAARAEKGAIRLRLSGEGRGSLN+SLSSSRDLTPAEAYRAAA GVKA GKGDGRRENVVXXXXXXX HSVGPDMDDSIMRGT A GNAVEAKGGG DAAAELA+KFRPQRDDLLELERQLAKLGLESKMGGPGGRARQR S GAP LSS LGDSFFFLNKSVIFGG G GGNG PANAYGNGNGPAAG VLGSPGTRLGV PGGGGG RSTSAPRRFNESD SPEG P + SGR TRADGRVA G QG G+GADRP G GG W GES G AQQGEIMRLLTCLKTLGDENV LMKECEDRDK VRQES++IREEMKRFQLKYHERFTLLKKTLDEVMRSYPQLAAPGTASA GGASTSDPAKT EEVQRLTQTNRKLTEQVKKYENYYKELCLKAESKRKEQLSQAKAARXXXX HHPSF
Sbjct: 15 AHRCAQGAEDACRKGDHAEATELHLAAARDFLRAAEQ------VQEHGVLASSLLLLADSHAARAEKGAIRLRLSGEGRGSLNNSLSSSRDLTPAEAYRAAAAGVKATGKGDGRRENVVXXXXXXXSHSVGPDMDDSIMRGTVANGNAVEAKGGGCDAAAELAQKFRPQRDDLLELERQLAKLGLESKMGGPGGRARQRLSSGGAPHLSSALGDSFFFLNKSVIFGGGGAGGNG------PANAYGNGNGPAAG-VLGSPGTRLGVTNPPGGGGGGWRSTSAPRRFNESDTSPEGAPQIPSGRGSDNVGDGTRADGRVAGGGETPRVGNTVGRGADTARRVQGPGSGADRPSAGAGGVWAGESAGEGGGGEGRPALLLSSAEEEARRVREEE-AQQGEIMRLLTCLKTLGDENVSLMKECEDRDK------VRQESEAIREEMKRFQLKYHERFTLLKKTLDEVMRSYPQLAAPGTASATGGASTSDPAKTTEEVQRLTQTNRKLTEQVKKYENYYKELCLKAESKRKEQLSQAKAARXXXXAHHPSF 542
BLAST of mRNA_E-fasciculatus_F_contig1236.1819.1 vs. uniprot
Match: A0A6H5KVB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVB2_9PHAE) HSP 1 Score: 535 bits (1378), Expect = 9.850e-182 Identity = 320/413 (77.48%), Postives = 325/413 (78.69%), Query Frame = 1
Query: 415 MDDSIMRGTAATGNAVEAKGGGVDAAAELAKKFRPQRDDLLELERQLAKLGLESKMGGPGGRARQRHPSVGAPQLSSPLGDSFFFLNKSVIFGGPGTGGNGLVAIGGPANAYGNGNGPAAGIVLGSPGTRLGVATSPGGGGGRSTSAPRRFNESDASPEGEPLMTSGRR-------TRADGRVADGA-------------------QGGGNGADRPLTGGGGAWTGESVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQQGEIMRLLTCLKTLGDENVFLMKECEDRDKASASTAVRQESKSIREEMKRFQLKYHERFTLLKKTLDEVMRSYPQLAAPGTASAAGGASTSDPAKTAEEVQRLTQTNRKLTEQVKKYENYYKELCLKAESKRKEQLSQAKAARXXXXXHHPSF 1575
MDDSIMRGTAA GNAVEA GGG DAAAELAKKFRPQRDDLLELERQLAKLGLESKMGGPGGRARQR S GAP LSS LGDSFFFLNKSVIFGG G GGNGLVA+GGPANAYGNGNGPAAG VLGSPGTR GV PGGGGGRSTSAPRRFNE DASPEG P + SGR TRADGRVA G QG G GADRP G GGAW GES AQQGEIMRLLTCLKTLGDENV LMKECE+RDKASASTAVRQES++IREEMKRFQLKYHERFTLLKKTLDEVMRSYPQLAAPGTASAAGG STSDPAKT EEVQRLTQTNRKLTEQVKKYENYYKELCLKAESKRKEQLSQAKAARXXXX HHPSF
Sbjct: 1 MDDSIMRGTAANGNAVEANGGGCDAAAELAKKFRPQRDDLLELERQLAKLGLESKMGGPGGRARQRLSSGGAPHLSSALGDSFFFLNKSVIFGGAGAGGNGLVAVGGPANAYGNGNGPAAG-VLGSPGTRPGVTNPPGGGGGRSTSAPRRFNEGDASPEGAPQIPSGRGSDNVGDGTRADGRVAGGGEIPRVGNTVGRGADTARRVQGPGCGADRPSAGAGGAWAGESA-REGGGGEGRPSLLLSSAEEEARRVREEEAQQGEIMRLLTCLKTLGDENVSLMKECEERDKASASTAVRQESEAIREEMKRFQLKYHERFTLLKKTLDEVMRSYPQLAAPGTASAAGGTSTSDPAKTVEEVQRLTQTNRKLTEQVKKYENYYKELCLKAESKRKEQLSQAKAARXXXXAHHPSF 411
BLAST of mRNA_E-fasciculatus_F_contig1236.1819.1 vs. uniprot
Match: W7TZI2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZI2_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 7.110e-7 Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query: 1114 QQGEIMRLLTCLKTLGDENVFLMKECEDRDKASASTAVRQESKSIREEMKRFQLKYHERFTLLKKTLDEVMRSYP 1338
QQGE++RLL C+KTLGDEN L+K ED ++A RQE++ IR E FQ Y +RF L+ L+E YP
Sbjct: 356 QQGEVVRLLACMKTLGDENALLIKRAEDGERA------RQENERIRRETLEFQELYAKRFKGLRAALEEFREKYP 424 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1236.1819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1236.1819.1 >prot_E-fasciculatus_F_contig1236.1819.1 ID=prot_E-fasciculatus_F_contig1236.1819.1|Name=mRNA_E-fasciculatus_F_contig1236.1819.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=614bp SRAPQAHRCAQGAEDAVRKGDHAEATELHLAAARDFLRAAEQARKNGRVQback to top mRNA from alignment at E-fasciculatus_F_contig1236:12899..19171- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1236.1819.1 ID=mRNA_E-fasciculatus_F_contig1236.1819.1|Name=mRNA_E-fasciculatus_F_contig1236.1819.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6273bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1236:12899..19171- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1236:12899..19171- >mRNA_E-fasciculatus_F_contig1236.1819.1 ID=mRNA_E-fasciculatus_F_contig1236.1819.1|Name=mRNA_E-fasciculatus_F_contig1236.1819.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3684bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1236:12899..19171- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |