mRNA_E-fasciculatus_F_contig12299.1770.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12299.1770.1
Unique NamemRNA_E-fasciculatus_F_contig12299.1770.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12299.1770.1 vs. uniprot
Match: D7FHX2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHX2_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 2.240e-98
Identity = 180/238 (75.63%), Postives = 187/238 (78.57%), Query Frame = 1 
Query:  286 VRIPLLRVNALGYQVPAGSVILEYMLVPGIPQPVAPVSTEE--SLSGVAARSTPLLREG--------------VDELKKPARKPALLACVGAVIAAVLAVRLSGVCSARMPTDLSPIPVPFKVAVGKHKGSSTHHIRLQGDGNVVVARGSKPLLPA--AAAGDAGATLWQSGPLPSLEQQQQSTTGKXXXXXXXXXXXXXXXXXXXXSCKKCQVKVTKEGTLALTRGREELAVFSPAW 945
            +R+P +     G QVPAGSVILEYMLVPGIPQPVAPVSTE   SLSG+AAR+T   RE               +DELKKPARKPALLACVGAVIAAVLAVRLSGVCSARMPTDLSPIPVPFKVAVGKHKGSSTHHIRLQGDGNVVVARG KPLL A  AAAGDAGATLWQSGPLPSL QQQQ + GK           XXXX     SCKKCQVKVTKEGTLALTRGREELAVFSPAW
Sbjct:  109 LRLPTVGPKLEGSQVPAGSVILEYMLVPGIPQPVAPVSTETEGSLSGLAARTTAPFREDGGNDGSRGGVGSCCMDELKKPARKPALLACVGAVIAAVLAVRLSGVCSARMPTDLSPIPVPFKVAVGKHKGSSTHHIRLQGDGNVVVARGPKPLLTAGAAAAGDAGATLWQSGPLPSLTQQQQRSPGKPGDNGKDKSGGXXXX-----SCKKCQVKVTKEGTLALTRGREELAVFSPAW 341
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12299.1770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHX2_ECTSI2.240e-9875.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12299contigE-fasciculatus_F_contig12299:85..4077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-12_006220.1
Exons6
Model size949
Cds size948
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12299.1770.1prot_E-fasciculatus_F_contig12299.1770.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12299 85..4076 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927736.469378-CDS-E-fasciculatus_F_contig12299:84..2351622927736.469378-CDS-E-fasciculatus_F_contig12299:84..235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12299 85..235 +
1695995672.2977884-CDS-E-fasciculatus_F_contig12299:84..2351695995672.2977884-CDS-E-fasciculatus_F_contig12299:84..235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12299 85..235 +
1622927736.4791882-CDS-E-fasciculatus_F_contig12299:573..7401622927736.4791882-CDS-E-fasciculatus_F_contig12299:573..740Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12299 574..740 +
1695995672.3077965-CDS-E-fasciculatus_F_contig12299:573..7401695995672.3077965-CDS-E-fasciculatus_F_contig12299:573..740Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12299 574..740 +
1622927736.4886644-CDS-E-fasciculatus_F_contig12299:1127..11781622927736.4886644-CDS-E-fasciculatus_F_contig12299:1127..1178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12299 1128..1178 +
1695995672.324392-CDS-E-fasciculatus_F_contig12299:1127..11781695995672.324392-CDS-E-fasciculatus_F_contig12299:1127..1178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12299 1128..1178 +
1622927736.4998896-CDS-E-fasciculatus_F_contig12299:2184..23011622927736.4998896-CDS-E-fasciculatus_F_contig12299:2184..2301Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12299 2185..2301 +
1695995672.3370905-CDS-E-fasciculatus_F_contig12299:2184..23011695995672.3370905-CDS-E-fasciculatus_F_contig12299:2184..2301Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12299 2185..2301 +
1622927736.5118535-CDS-E-fasciculatus_F_contig12299:3066..32351622927736.5118535-CDS-E-fasciculatus_F_contig12299:3066..3235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12299 3067..3235 +
1695995672.354475-CDS-E-fasciculatus_F_contig12299:3066..32351695995672.354475-CDS-E-fasciculatus_F_contig12299:3066..3235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12299 3067..3235 +
1622927736.5235982-CDS-E-fasciculatus_F_contig12299:3783..40761622927736.5235982-CDS-E-fasciculatus_F_contig12299:3783..4076Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12299 3784..4076 +
1695995672.3654382-CDS-E-fasciculatus_F_contig12299:3783..40761695995672.3654382-CDS-E-fasciculatus_F_contig12299:3783..4076Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12299 3784..4076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12299.1770.1

>prot_E-fasciculatus_F_contig12299.1770.1 ID=prot_E-fasciculatus_F_contig12299.1770.1|Name=mRNA_E-fasciculatus_F_contig12299.1770.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=316bp
RHAKTEPPSSAAGGGDSENDDDDDLRLPTAGPKLEVFCYSRGSPAKGAVA
APAGDCGVPPGGGEGGRKETEKVEIGRAHVTLVADGGGGAGSHARVRIPL
LRVNALGYQVPAGSVILEYMLVPGIPQPVAPVSTEESLSGVAARSTPLLR
EGVDELKKPARKPALLACVGAVIAAVLAVRLSGVCSARMPTDLSPIPVPF
KVAVGKHKGSSTHHIRLQGDGNVVVARGSKPLLPAAAAGDAGATLWQSGP
LPSLEQQQQSTTGKSGDNGKSKGGGGSGGSGGGGSCKKCQVKVTKEGTLA
LTRGREELAVFSPAWA
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mRNA from alignment at E-fasciculatus_F_contig12299:85..4077+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12299.1770.1 ID=mRNA_E-fasciculatus_F_contig12299.1770.1|Name=mRNA_E-fasciculatus_F_contig12299.1770.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3993bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12299:85..4077+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTCATGCAAAGACCGAGCCGCCTTCCTCAGCGGCCGGTGGGGGCGACAG
CGAGAACGACGATGATGATGACCTGCGACTGCCTACGGCGGGACCGAAGC
TCGAGGTGTTCTGCTACAGCAGGGGCAGCCCCGCGAAGGGTGCGGTCGCC
GGTACGCTCGTAGGATGTGCATGCTCACGCATGGTGTCGGTGGGATGCAA
GGTAGCGTCGATGCTTGCAGATTGTTGTTGCTGTTGTTGTTGCTGTTTTC
TTTAATTGTATGCATAGACGGAGAATACAAGATATGGATACTGTTCTGAG
CAAATAGTTGGTAATGGTTATTACATAGTAGTGTCGCGATAGTGTACCTT
TTTCTGGCGTGTTTGATGACGCTCGGCGGTGCACGTCGGCACACCTCGAT
ACCTGCTTGATCACCGTCCTTGGTGCAATGAAATGCTGCTGCTGCTGCTG
CTGCTGCGCAATGCCACAAACACACCTGCGGACGAGCAGCCCCGGCGGGG
GACTGTGGCGTGCCACCAGGCGGGGGGGAGGGGGGGCGGAAAGAGACGGA
GAAGGTGGAGATCGGCAGGGCGCACGTGACGCTGGTCGCCGACGGCGGCG
GCGGGGCCGGCAGCCATGCCAGAGTGCGAATTCCCCTCTTGCGCGTCAAC
GCCCTCGTGAGTGCGGCGTGTTTTTTGTTGGGAGATGGCCTTGTCTAGAC
GAAGAGGCAACGGTGGTGGTGGTGATAATAGTCGTGGGTGGTGAACACGA
GTTTGTGTCGAAACGTCGCTCGATACATGCGAGGCCCAAACGCATGAGCT
TCGTTTCATTGTTTGTTGTTTCTTTGTCCTGATTGTTCACGAAGACACAT
CCACGTATTGCAATGCATCTGGTGGCACACAGAAACGCAGAGGCTTCCGC
ACCAGCACCGCCAGGCAGAGTGAGTGCACCGCTGCTATGCTAGATGCTGC
TAGATGCGGTGTCTGCTGCTGCTGCCCCTTCCTCCCCTTATCCCTGAAAT
CATCCCCCCACCCCTCCGCCTCGGTCTGGGTTTGAATTTGCAGGGTTATC
AGGTCCCCGCGGGAAGCGTGATATTGGAGTACATGCTGGTGCCGGTAAGA
CCAAAAAGTTTTTTTTTTTCGGCATTTTCTTGGGTTCTGCGAGAGAAAAG
AGAAAGAGAAAGAGAAAGGCGATTTGCTTGCGTGTGCCTATTTAGCGTGT
TGTTGACACGCGCGTTCACAAATGCGACACAAGCAAAATCTTAAAAAAAG
GTGCGATGCCCTCCAGTACGGTGGTGGTGACGCTATTAATAGCAGCCACG
TCGACCTATGATCTCGTCGTCTCGTATTAATGACCCAGGGAAGTTGGACG
TTTTCGCGGCGTACGTATGCGTGTGGTTTGTTTCTCTCCATGTGTTGCGT
GTTTTGTTTCACCCGGGCTGTTCCGTGAACGGATTCGAGCGGTAGGGCGA
CGACAACGGTGCATTAGTGGTATGGTTCGGTGTGGTGTGGGCGTGGTGTG
GTACGATAGCTCGTTCTGGCTTGGTTGTCCCTCATGCCAACAACGGTCCG
GTCGTTGTGCTTGCTGATCGCGAGTACGGTCAGCTCAGCTGACAAACCTC
CCATGACAGCAGTAGACCATGCAGCGTGCCAGGCGCGAAACAGTCGTTGC
TACTTCCACTGCTGCTGCGTGATCGGATCATGTCGATATTCCGAAGACCG
CTCATGTCGATATTCCGAAGACCGCGGCAGCCAACAAATGTCATCACCCC
CACACTCCAAAGCTTTAACTCAATCCCCCGCCCCTTGATTTATTTTTCTA
CATGACTCGGGTATGTTGTTGATCCACGTGTATTTTCCACCGCGTGCCTA
ACAGTAGTGATGCCTTCCTGCGTACCTGACTAACCGCTACTACAAGCACC
GCTGATTTATCATGTGTGACCGCGCTTGCAGCGGTAATCGGACAAATGGA
GACCAACCTCCTGCCTGCCCCCCCCCCAACGACACGGCACTAGATCCTCG
GCATGTTAAATGGTGCGACGATCTATTTCTTCATGACGTAAAGATTGAAC
GAATTCTAAAAAGTACTCTGTACTCTCACTCTCATTATTTGTCCGGACAG
GGAATCCCGCAACCGGTGGCGCCCGTGTCGACGGAGGAATCGCTTTCCGG
GGTGGCTGCGCGTTCGACACCCCTGTTACGGGAGGGCGTGGACGAGCTCA
AGAAGCCGGCGCGGAAGGTTGGTCGAACCCGGTTGTTGTGTTTGTGTGTG
TTTCTTAATGAGCACGGCGCTAACCGGCTGACGAGTGAAATGAGGCCAGT
GCCAAGTGCGGCTGAAAACGGAAAGTGCTTCCAAAGGCACGTGATCTGGG
ACCCTGTGAGGGGGCGTGATGAGAGAGGCTAGACTGTTCTCCGCGATGTG
TGCGTGTGTGTGTGTTTTGTATCTGTGTTTTGTTCCTCTGTTCAGCATCG
ACCACGCTACTGCTGCAACCGGCCGGTCAGTGAAGACATGAGAGCATCTG
TGTGCGTGGGTGTGCATGCTTGTGTTGTTGGTTTCCCTGGTGCTCGTTCG
CGGCTCTTGCGCGTACTCGTTGTTCCCTACAACAACTGGAGGTTTTGATT
TTGTTTTATCGTTGTTTTGCTCACCAAAAACTTGCAACCAAGAAACCTTG
AGTTTATTTTTCGTTGAACTTCGCGCACGGTGTCTCGCGCGTTCGTGAGG
TTGAGCCTGCGCAGGCGCGCGTGCACCCTCGCCGCTCTCCCACCACACCG
AACACACCATCTGTCATCCCCCTCTGTTCCCCCTCCCCTCCCTCTCCTTC
TGTCTGACCTTGATCTTTTCACCCCCGCTTTGTCTTTTGTTGCTTTGTTC
TGGCCCATCCCAATGGCAAAAACGTGGCGGCTGCTGACTGCTGTTCGCTT
GCCGCATGCACGAACACCACCTGCTTTCCGACTACAACGACGAACACCAC
CTGCCTACAACGACGACCAAACGAAACAAAAGCCGGCACTCCTCGCCTGC
GTGGGCGCGGTAATCGCCGCCGTGCTGGCAGTGCGCCTGTCGGGCGTGTG
CAGCGCGCGGATGCCCACCGACCTGTCCCCCATCCCCGTCCCGTTCAAGG
TCGCCGTGGGAAAGCACAAGGGCTCCAGCACGCACCACATCCGGCTGCAA
GGTTAGTAGACTCTCTCTCTCTTGCTCTCTGCCCCCCCTCTCTTTCTCCG
TCTTTGTGTGTGTCTCTCTCTGGCAGTAGAGTGAGCCGAAGGGGGCGCCG
TCGAAGGATACTTTCGGGGGGAAGTGCAACAGCTCCGGCACGCATGCACC
ACCTTTGCACGCACGCACACCTGTTTTATGCCCATATCTGCCCCTTGGCT
ACTACTGTATCTCCTCGTGACCTGAGCCACTTGCTCTTCCCGCGAGGCTA
GGATGTGAACGAATTGGTTGAAGAGAAAACTCGAACAAATACACGCTGTT
TTTTATTGGTTGATTTTTCGACGACCAGCAAAAGCTAGCGTTAACCGCCG
TGCCTAGTACATTAGAGACCACCCGTCTTTTACCCCAACACCCCAACAGC
TTCGTTTCCCCCGAAGTGTCCACGTTGACTCCCCTTCCCCCCCCCCCCCC
CCCCCCCCCCTTCACTTCGCGAATCCTACCCTGCCCTGCGCTCAACCTGC
CGTACACGCCAAACCGTGATCATCTACTGGTCGAACAACAACGACGCAGG
GGACGGGAACGTCGTCGTGGCGAGGGGCTCCAAGCCGCTTCTTCCCGCAG
CAGCAGCCGGCGACGCGGGCGCCACCCTCTGGCAGAGCGGTCCGCTCCCT
TCCCTGGAGCAGCAGCAGCAGTCGACGACCGGAAAGTCCGGCGACAACGG
CAAGAGTAAGGGTGGCGGCGGGAGCGGCGGGAGCGGCGGCGGCGGCAGCT
GCAAGAAGTGTCAAGTCAAGGTTACCAAGGAGGGGACGCTGGCGCTAACC
CGCGGGCGGGAGGAGCTCGCCGTGTTCTCGCCGGCGTGGGCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12299:85..4077+

>mRNA_E-fasciculatus_F_contig12299.1770.1 ID=mRNA_E-fasciculatus_F_contig12299.1770.1|Name=mRNA_E-fasciculatus_F_contig12299.1770.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1896bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12299:85..4077+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTCATGCAAAGACCGAGCCGCCTTCCTCAGCGGCCGGTGGGGGCGACAG
CGAGAACGACGATGATGATGACCTGCGACTGCCTACGGCGGGACCGAAGC
TCGAGGTGTTCTGCTACAGCAGGGGCAGCCCCGCGAAGGGTGCGGTCGCC
GCGTCATGCAAAGACCGAGCCGCCTTCCTCAGCGGCCGGTGGGGGCGACA
GCGAGAACGACGATGATGATGACCTGCGACTGCCTACGGCGGGACCGAAG
CTCGAGGTGTTCTGCTACAGCAGGGGCAGCCCCGCGAAGGGTGCGGTCGC
CGCCCCGGCGGGGGACTGTGGCGTGCCACCAGGCGGGGGGGAGGGGGGGC
GGAAAGAGACGGAGAAGGTGGAGATCGGCAGGGCGCACGTGACGCTGGTC
GCCGACGGCGGCGGCGGGGCCGGCAGCCATGCCAGAGTGCGAATTCCCCT
CTTGCGCGTCAACGCCCTCCCCCGGCGGGGGACTGTGGCGTGCCACCAGG
CGGGGGGGAGGGGGGGCGGAAAGAGACGGAGAAGGTGGAGATCGGCAGGG
CGCACGTGACGCTGGTCGCCGACGGCGGCGGCGGGGCCGGCAGCCATGCC
AGAGTGCGAATTCCCCTCTTGCGCGTCAACGCCCTCGGTTATCAGGTCCC
CGCGGGAAGCGTGATATTGGAGTACATGCTGGTGCCGGGTTATCAGGTCC
CCGCGGGAAGCGTGATATTGGAGTACATGCTGGTGCCGGGAATCCCGCAA
CCGGTGGCGCCCGTGTCGACGGAGGAATCGCTTTCCGGGGTGGCTGCGCG
TTCGACACCCCTGTTACGGGAGGGCGTGGACGAGCTCAAGAAGCCGGCGC
GGAAGGGAATCCCGCAACCGGTGGCGCCCGTGTCGACGGAGGAATCGCTT
TCCGGGGTGGCTGCGCGTTCGACACCCCTGTTACGGGAGGGCGTGGACGA
GCTCAAGAAGCCGGCGCGGAAGCCGGCACTCCTCGCCTGCGTGGGCGCGG
TAATCGCCGCCGTGCTGGCAGTGCGCCTGTCGGGCGTGTGCAGCGCGCGG
ATGCCCACCGACCTGTCCCCCATCCCCGTCCCGTTCAAGGTCGCCGTGGG
AAAGCACAAGGGCTCCAGCACGCACCACATCCGGCTGCAAGCCGGCACTC
CTCGCCTGCGTGGGCGCGGTAATCGCCGCCGTGCTGGCAGTGCGCCTGTC
GGGCGTGTGCAGCGCGCGGATGCCCACCGACCTGTCCCCCATCCCCGTCC
CGTTCAAGGTCGCCGTGGGAAAGCACAAGGGCTCCAGCACGCACCACATC
CGGCTGCAAGGGGACGGGAACGTCGTCGTGGCGAGGGGCTCCAAGCCGCT
TCTTCCCGCAGCAGCAGCCGGCGACGCGGGCGCCACCCTCTGGCAGAGCG
GTCCGCTCCCTTCCCTGGAGCAGCAGCAGCAGTCGACGACCGGAAAGTCC
GGCGACAACGGCAAGAGTAAGGGTGGCGGCGGGAGCGGCGGGAGCGGCGG
CGGCGGCAGCTGCAAGAAGTGTCAAGTCAAGGTTACCAAGGAGGGGACGC
TGGCGCTAACCCGCGGGCGGGAGGAGCTCGCCGTGTTCTCGCCGGCGTGG
GCGGGGACGGGAACGTCGTCGTGGCGAGGGGCTCCAAGCCGCTTCTTCCC
GCAGCAGCAGCCGGCGACGCGGGCGCCACCCTCTGGCAGAGCGGTCCGCT
CCCTTCCCTGGAGCAGCAGCAGCAGTCGACGACCGGAAAGTCCGGCGACA
ACGGCAAGAGTAAGGGTGGCGGCGGGAGCGGCGGGAGCGGCGGCGGCGGC
AGCTGCAAGAAGTGTCAAGTCAAGGTTACCAAGGAGGGGACGCTGGCGCT
AACCCGCGGGCGGGAGGAGCTCGCCGTGTTCTCGCCGGCGTGGGCG
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