mRNA_E-fasciculatus_F_contig1220.1713.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1220.1713.1
Unique NamemRNA_E-fasciculatus_F_contig1220.1713.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1220.1713.1 vs. uniprot
Match: D8LM24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM24_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.210e-10
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 ELGHTWSVIKMHAARVWGSLPRDPIVGSDTADEITGTLFAHI 126
            E+G+TWS IKMHAARV G LPRDPIVG +TADE+  T+   +
Sbjct:    9 EMGYTWSDIKMHAARVSGWLPRDPIVGCNTADEMAWTVLRGV 50
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1220.1713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM24_ECTSI1.210e-1064.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1220contigE-fasciculatus_F_contig1220:18644..18775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_002620.1
Exons1
Model size132
Cds size102
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927729.5962324-CDS-E-fasciculatus_F_contig1220:18643..187451622927729.5962324-CDS-E-fasciculatus_F_contig1220:18643..18745Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1220 18644..18745 -
1695995669.3443544-CDS-E-fasciculatus_F_contig1220:18643..187451695995669.3443544-CDS-E-fasciculatus_F_contig1220:18643..18745Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1220 18644..18745 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927729.609045-UTR-E-fasciculatus_F_contig1220:18745..187751622927729.609045-UTR-E-fasciculatus_F_contig1220:18745..18775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1220 18746..18775 -
1695995669.3577745-UTR-E-fasciculatus_F_contig1220:18745..187751695995669.3577745-UTR-E-fasciculatus_F_contig1220:18745..18775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1220 18746..18775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1220.1713.1prot_E-fasciculatus_F_contig1220.1713.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1220 18644..18745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1220.1713.1

>prot_E-fasciculatus_F_contig1220.1713.1 ID=prot_E-fasciculatus_F_contig1220.1713.1|Name=mRNA_E-fasciculatus_F_contig1220.1713.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=34bp
MHAARVWGSLPRDPIVGSDTADEITGTLFAHIE*
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mRNA from alignment at E-fasciculatus_F_contig1220:18644..18775-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1220.1713.1 ID=mRNA_E-fasciculatus_F_contig1220.1713.1|Name=mRNA_E-fasciculatus_F_contig1220.1713.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=132bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1220:18644..18775- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGTTGGGCCACACTTGGTCCGTCATCAAGATGCACGCCGCTCGGGTGTG
GGGATCGCTACCCCGAGACCCGATTGTGGGATCCGACACGGCAGACGAGA
TCACCGGGACTCTTTTCGCGCACATCGAGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1220:18644..18775-

>mRNA_E-fasciculatus_F_contig1220.1713.1 ID=mRNA_E-fasciculatus_F_contig1220.1713.1|Name=mRNA_E-fasciculatus_F_contig1220.1713.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=204bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1220:18644..18775- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACGCCGCTCGGGTGTGGGGATCGCTACCCCGAGACCCGATTGTGGG
ATCCGACACGGCAGACGAGATCACCGGGACTCTTTTCGCGCACATCGAGT
GAATGCACGCCGCTCGGGTGTGGGGATCGCTACCCCGAGACCCGATTGTG
GGATCCGACACGGCAGACGAGATCACCGGGACTCTTTTCGCGCACATCGA
GTGA
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