mRNA_E-fasciculatus_F_contig1215.1672.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1215.1672.1
Unique NamemRNA_E-fasciculatus_F_contig1215.1672.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1215.1672.1 vs. uniprot
Match: D8LJC1_ECTSI (Ankyrin repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC1_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 4.160e-11
Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   28 SALGLAAESGEIGAMCVMLERGEDVNVSDPPTSAHCRTALHWAAFSNNEVVIELLVEAGASVQAVGKGHE----SPLHVSAERSALEAARALLRHGAD 309
            SALGLAA  G +  M  ++  G DVN    P S  C TALH AA  +    I++L+EAGAS+ A G G +    +PLHV++E+ + EAA +L++HGAD
Sbjct:  109 SALGLAARGGHVEVMQALIRHGVDVNA---PDSNGC-TALHSAAIGDAVGAIDVLIEAGASIDAQG-GEDGEMYTPLHVASEKGSSEAALSLVKHGAD 201          
BLAST of mRNA_E-fasciculatus_F_contig1215.1672.1 vs. uniprot
Match: D7G751_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G751_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 8.190e-11
Identity = 44/97 (45.36%), Postives = 60/97 (61.86%), Query Frame = 1
Query:   28 SALGLAAESGEIGAMCVMLERGEDVNVSDPPTSAHCRTALHWAAFSNNEVVIELLVEAGASVQAVGK---GHESPLHVSAERSALEAARALLRHGAD 309
            SALGLAA  G +  M  ++  G DV   D P S  C TALH AA  +    I++L+EAGAS+ A G       +PLHV++E+ + EAA +L++HGAD
Sbjct:  178 SALGLAARGGHVEVMQALIRHGVDV---DGPDSNGC-TALHSAAIGDAVGAIDVLIEAGASIDAQGGEDGARYTPLHVASEQGSSEAALSLVKHGAD 270          
BLAST of mRNA_E-fasciculatus_F_contig1215.1672.1 vs. uniprot
Match: A0A439CPV3_9PEZI (Helo_like_N domain-containing protein n=2 Tax=Fungi TaxID=4751 RepID=A0A439CPV3_9PEZI)

HSP 1 Score: 58.5 bits (140), Expect = 1.390e-7
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 1
Query:  136 RTALHWAAFSNNEVVIELLVEAGASVQAVGKGHESPLH---VSAERSALEAARALLRHGADSNATDAFRQTPL 345
            RT LHWA  + N   +E+L+E GAS   V K H +PLH   ++   S ++  R L+  GAD +A DA+++TPL
Sbjct:  460 RTPLHWAVITGNISAVEILIEHGASPTCVDKQHMTPLHAMYLAPSSSQMQCGRILIDSGADVDALDAWKRTPL 532          
BLAST of mRNA_E-fasciculatus_F_contig1215.1672.1 vs. uniprot
Match: T0RJS5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RJS5_SAPDV)

HSP 1 Score: 57.0 bits (136), Expect = 2.350e-7
Identity = 45/119 (37.82%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   16 VIRRSALGLAAESGEIGAMCVMLERGEDVNVSDPPTSAHCRTALHWAAFSNNEVVIELLVEAGASVQAVGKGHESPLHVSAERSALEAARALL--------RHGADSNATDAFRQTPLH 348
            VI+R  L  A   G+   +C +L++G  VNV +    A  RTALH AA +N   + ELLV AGA + AV     +PL V+ E + ++ A  LL        R GAD +A  +++  PLH
Sbjct:   56 VIKR--LWAAVNKGDGNRVCALLKQGVPVNVRN----ATGRTALHAAAAANQNAIAELLVAAGAEIDAVAVDGRTPLIVAVESNGVDIANQLLQARASVHMRVGADDSAAASWQ--PLH 166          
BLAST of mRNA_E-fasciculatus_F_contig1215.1672.1 vs. uniprot
Match: D7G1A4_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1A4_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 9.000e-7
Identity = 44/109 (40.37%), Postives = 57/109 (52.29%), Query Frame = 1
Query:   28 SALGLAAESGEIGAMCVMLERGEDVNVSDPPTSAHCRTALHWAAFSNNEVVIELLVEAGASVQAVGKGHE--SPLHVSAERSALEAARALLRHGADSNATDAFRQTPLH 348
            SAL LAA  G    + +++  G DVN SD        TAL+ AA ++    I++LV+AGA V+A   G    S LHV+    + EA  ALL H A     DA   TPLH
Sbjct:  165 SALDLAACGGHQQILKMLIRHGCDVNASDSDGV----TALYLAALNDQPYSIDVLVKAGAKVEARSPGRHRWSALHVACAYGSNEAVSALLTHDALLFGRDASNHTPLH 269          
BLAST of mRNA_E-fasciculatus_F_contig1215.1672.1 vs. uniprot
Match: A0A6J1SLX4_FRAOC (RING-type E3 ubiquitin transferase n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SLX4_FRAOC)

HSP 1 Score: 55.5 bits (132), Expect = 1.640e-6
Identity = 35/107 (32.71%), Postives = 55/107 (51.40%), Query Frame = 1
Query:   28 SALGLAAESGEIGAMCVMLERGEDVNVSDPPTSAHCRTALHWAAFSNNEVVIELLVEAGASVQAVGKGHESPLHVSAERSALEAARALLRHGADSNATDAFRQTPLH 348
            +AL  A+++G +  + ++L    DV + D         A+H AAF +  VV+ELL +AGA + A  K  ++ LH+S  +  L   + LL  G   +  D    TPLH
Sbjct:  462 TALQAASQNGHLEVIKILLFHKADVEIEDNDGDR----AVHHAAFGDEPVVMELLAQAGADLNARNKRRQTALHISVNKGHLSVVKNLLALGCHPSLQDEDGDTPLH 564          
BLAST of mRNA_E-fasciculatus_F_contig1215.1672.1 vs. uniprot
Match: A0A371B0Q6_9HYPH (Ankyrin repeat domain-containing protein n=1 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=A0A371B0Q6_9HYPH)

HSP 1 Score: 54.3 bits (129), Expect = 2.390e-6
Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 1
Query:  106 VSDPPTSAHCRTALHWAAFSNNEVVIELLVEAGASVQAVGKGHESPLHVSAERSALEAARALLRHGADSNATDA 327
            V+   T       LH AA + +   +E LV+ GA+++A  KG  +PLHV+      +AARALLR GAD+NA DA
Sbjct:   21 VAPDATEIAAYQGLHAAAAAGDAAAVERLVKNGAALEARDKGGRTPLHVAVHLKKADAARALLRLGADANALDA 94          
BLAST of mRNA_E-fasciculatus_F_contig1215.1672.1 vs. uniprot
Match: UPI001D04B541 (uncharacterized protein n=1 Tax=Diaporthe batatas TaxID=748121 RepID=UPI001D04B541)

HSP 1 Score: 52.4 bits (124), Expect = 2.020e-5
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 1
Query:  136 RTALHWAAFSNNEVVIELLVEAGASVQAVGKGH-ESPLHVSAERSAL-EAARALLRHGADSNATDAFRQTPL 345
            RTAL WAA   +   I  L+EAGA ++   +   E+PL ++    A  EA R LL  GAD NATD +RQTPL
Sbjct:  547 RTALQWAAAKGDATAISELLEAGAQLEYKTRMRSETPLLIACRTGANPEAVRTLLAAGADINATDCYRQTPL 618          
BLAST of mRNA_E-fasciculatus_F_contig1215.1672.1 vs. uniprot
Match: H2TMD5_TAKRU (SOCS box domain-containing protein n=4 Tax=Takifugu TaxID=31032 RepID=H2TMD5_TAKRU)

HSP 1 Score: 51.6 bits (122), Expect = 3.500e-5
Identity = 41/107 (38.32%), Postives = 56/107 (52.34%), Query Frame = 1
Query:   31 ALGLAAESGEIGAMCVMLERGEDVNVSDPPTSAHCRTALHWAAFSNNEVVIELLVEAGASVQAVGKGHES-PLHVSAERSA-LEAARALLRHGADSNATDAFRQTPL 345
            AL   AE G + A  ++L  G D+N  DP +  +    LH A   N   ++ LLV  GA ++   + HES PL +++E S  L     LL  GAD NA D  R+TPL
Sbjct:   69 ALFKVAERGLLYAAEILLRYGADLNFEDPVSYYN---PLHVAVLRNRPTMVRLLVSHGADIEKRDRIHESSPLDLASEESERLLCLLTLLDMGADVNAGDKHRKTPL 172          
BLAST of mRNA_E-fasciculatus_F_contig1215.1672.1 vs. uniprot
Match: UPI0009B9FCEE (ankyrin repeat domain-containing protein n=1 Tax=Corynebacterium pacaense TaxID=1816684 RepID=UPI0009B9FCEE)

HSP 1 Score: 50.1 bits (118), Expect = 4.220e-5
Identity = 35/108 (32.41%), Postives = 60/108 (55.56%), Query Frame = 1
Query:   25 RSALGLAAESGEIGAMCVMLERGEDVNVSDPPTSAHCRTALHWAAFSNNEVVIELLVEAGASVQAVGKGHESPLHVSAERSALEAARA--LLRHGADSNATDAFRQTP 342
            R+ L  AAE+G +  +  +L+ G D  ++DP       TALH+AA   ++ +IE+L++AGA++ A      +PL  +   +  ++A    LLR GAD +  D+   +P
Sbjct:   51 RTVLMRAAEAGNLLFVARLLDMGADSAITDPTGL----TALHYAAIEGDDGIIEILIDAGANLDAPDDRDRTPLWYACAHNLPDSAAVEILLRAGADCHRRDSSGVSP 154          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1215.1672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D8LJC1_ECTSI4.160e-1145.92Ankyrin repeat protein (Partial) (Fragment) n=1 Ta... [more]
D7G751_ECTSI8.190e-1145.36Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
A0A439CPV3_9PEZI1.390e-742.47Helo_like_N domain-containing protein n=2 Tax=Fung... [more]
T0RJS5_SAPDV2.350e-737.82Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
D7G1A4_ECTSI9.000e-740.37Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6J1SLX4_FRAOC1.640e-632.71RING-type E3 ubiquitin transferase n=1 Tax=Frankli... [more]
A0A371B0Q6_9HYPH2.390e-643.24Ankyrin repeat domain-containing protein n=1 Tax=P... [more]
UPI001D04B5412.020e-547.22uncharacterized protein n=1 Tax=Diaporthe batatas ... [more]
H2TMD5_TAKRU3.500e-538.32SOCS box domain-containing protein n=4 Tax=Takifug... [more]
UPI0009B9FCEE4.220e-532.41ankyrin repeat domain-containing protein n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1215contigE-fasciculatus_F_contig1215:19011..19361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score63.2
Seed ortholog evalue9.6e-08
Seed eggNOG ortholog13249.RPRC009478-PA
KEGG koko:K10645
EggNOG free text desc.protein ubiquitination
EggNOG OGs39MGQ@33154,3CP3F@33208,3E57N@33213,42AJH@6656,COG0666@1,KOG0504@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927724.8137817-CDS-E-fasciculatus_F_contig1215:19010..193611622927724.8137817-CDS-E-fasciculatus_F_contig1215:19010..19361Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1215 19011..19361 +
1695995666.865097-CDS-E-fasciculatus_F_contig1215:19010..193611695995666.865097-CDS-E-fasciculatus_F_contig1215:19010..19361Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1215 19011..19361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1215.1672.1prot_E-fasciculatus_F_contig1215.1672.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1215 19011..19361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1215.1672.1

>prot_E-fasciculatus_F_contig1215.1672.1 ID=prot_E-fasciculatus_F_contig1215.1672.1|Name=mRNA_E-fasciculatus_F_contig1215.1672.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=117bp
NTCATVIRRSALGLAAESGEIGAMCVMLERGEDVNVSDPPTSAHCRTALH
WAAFSNNEVVIELLVEAGASVQAVGKGHESPLHVSAERSALEAARALLRH
GADSNATDAFRQTPLHR
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mRNA from alignment at E-fasciculatus_F_contig1215:19011..19361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1215.1672.1 ID=mRNA_E-fasciculatus_F_contig1215.1672.1|Name=mRNA_E-fasciculatus_F_contig1215.1672.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=351bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1215:19011..19361+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACACCTGCGCCACAGTCATCAGACGATCGGCGCTTGGTCTTGCAGCAGA GTCTGGCGAAATCGGGGCCATGTGTGTGATGCTCGAACGCGGAGAGGATG TAAATGTATCCGACCCGCCGACCTCGGCACACTGCCGAACCGCCCTACAC TGGGCTGCGTTCAGCAACAACGAAGTTGTGATTGAGTTGCTTGTCGAAGC TGGCGCGAGCGTGCAAGCGGTGGGCAAAGGTCACGAGTCACCCCTTCATG TTTCTGCCGAGAGAAGCGCCCTCGAAGCTGCGCGCGCGCTCTTGAGGCAC GGCGCGGATTCGAATGCCACCGATGCCTTCCGGCAAACGCCACTGCACAG G
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1215:19011..19361+

>mRNA_E-fasciculatus_F_contig1215.1672.1 ID=mRNA_E-fasciculatus_F_contig1215.1672.1|Name=mRNA_E-fasciculatus_F_contig1215.1672.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=702bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1215:19011..19361+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACACCTGCGCCACAGTCATCAGACGATCGGCGCTTGGTCTTGCAGCAGA
GTCTGGCGAAATCGGGGCCATGTGTGTGATGCTCGAACGCGGAGAGGATG
TAAATGTATCCGACCCGCCGACCTCGGCACACTGCCGAACCGCCCTACAC
TGGGCTGCGTTCAGCAACAACGAAGTTGTGATTGAGTTGCTTGTCGAAGC
TGGCGCGAGCGTGCAAGCGGTGGGCAAAGGTCACGAGTCACCCCTTCATG
TTTCTGCCGAGAGAAGCGCCCTCGAAGCTGCGCGCGCGCTCTTGAGGCAC
GGCGCGGATTCGAATGCCACCGATGCCTTCCGGCAAACGCCACTGCACAG
GAACACCTGCGCCACAGTCATCAGACGATCGGCGCTTGGTCTTGCAGCAG
AGTCTGGCGAAATCGGGGCCATGTGTGTGATGCTCGAACGCGGAGAGGAT
GTAAATGTATCCGACCCGCCGACCTCGGCACACTGCCGAACCGCCCTACA
CTGGGCTGCGTTCAGCAACAACGAAGTTGTGATTGAGTTGCTTGTCGAAG
CTGGCGCGAGCGTGCAAGCGGTGGGCAAAGGTCACGAGTCACCCCTTCAT
GTTTCTGCCGAGAGAAGCGCCCTCGAAGCTGCGCGCGCGCTCTTGAGGCA
CGGCGCGGATTCGAATGCCACCGATGCCTTCCGGCAAACGCCACTGCACA
GG
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