mRNA_E-fasciculatus_F_contig12131.1661.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE) HSP 1 Score: 184 bits (466), Expect = 1.580e-55 Identity = 99/161 (61.49%), Postives = 112/161 (69.57%), Query Frame = -1
Query: 3 LHCCATVKFVGQPVGDNGDAVRVLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPG------------DEIGAMHDHGNNNEEIEVDNQRIRHMLARAPADRSW 449
LHCC V + +PV DNGD VRVLLEAGADV+AK T D NC TPLH AVNRR+A IG IRALLEGGANVN+RD F++TPLH+AC+ S+ VE LL WGADEKLTD DG TP D A ++ +E IE D RIR MLARAPADRSW
Sbjct: 23 LHCC--VCDINEPVLDNGDTVRVLLEAGADVDAKTTGDGNCATPLHYAVNRRIAPIGAIRALLEGGANVNARDVFDQTPLHVACARSSVNGVEFLLHWGADEKLTDLDGETPAGAIVDSEEETPPDVTDAPGENRGKDEAIEADQHRIRQMLARAPADRSW 181
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE) HSP 1 Score: 174 bits (441), Expect = 1.400e-49 Identity = 94/149 (63.09%), Postives = 112/149 (75.17%), Query Frame = -1
Query: 3 LHCCATVKFVGQPVGDNGDAVRVLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHGNNNEEIEVDNQRIRHMLARAPADRSW 449
LH A++ PV DNGDAVRVLL AGADV+AK T D CDT L++AVNRR+AS GTIRALLEGGAN+N+R G ++TPLH+ACS S+A VELLLRWGAD+KLT G TP + A+ ++EE+E DNQRIR MLAR PA RSW
Sbjct: 244 LHYAASIDG---PVRDNGDAVRVLLRAGADVSAKGTKDP-CDTSLYLAVNRRIASDGTIRALLEGGANINARIGGDQTPLHVACSRSSAVGVELLLRWGADDKLTTNVGQTPAHVVRALQQDDLDDEELEADNQRIRRMLARDPAARSW 388
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI) HSP 1 Score: 174 bits (440), Expect = 6.360e-49 Identity = 95/149 (63.76%), Postives = 110/149 (73.83%), Query Frame = -1
Query: 3 LHCCATVKFVGQPVGDNGDAVRVLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHGNNNEEIEVDNQRIRHMLARAPADRSW 449
LH A ++ G+ D GDAVRVLL AGADV+AK TDD PLHIAV R+ S GTIRALLEGGA+VN RD +RTPLH AC++S+ AAVELLLRWGADEKLTD+ TP D IG D G+++ +IE D QRI MLARAPADRSW
Sbjct: 281 LHHAALIEVHGR---DKGDAVRVLLAAGADVHAKTTDDHLRCAPLHIAVCGRVPSTGTIRALLEGGADVNVRDIEDRTPLHEACTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGTSGDVGSDHGDIEADGQRIHQMLARAPADRSW 426
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI) HSP 1 Score: 168 bits (426), Expect = 4.160e-47 Identity = 90/149 (60.40%), Postives = 107/149 (71.81%), Query Frame = -1
Query: 3 LHCCATVKFVGQPVGDNGDAVRVLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHGNNNEEIEVDNQRIRHMLARAPADRSW 449
LH A+ + V D GDAVRVLL AGADVN K T+D+ C TPLH+AVNR M S GTI ALLEGGAN+N+R + TPLH+AC+ + VELLLRWGADEKL + DG TP D +G + + ++EE E DNQRI MLARAPADRSW
Sbjct: 283 LHYVASFD---ETVRDKGDAVRVLLGAGADVNVKGTNDS-CATPLHLAVNRWMTSTGTICALLEGGANINARTAGDDTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEEREADNQRIHRMLARAPADRSW 427
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: D8LQI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI9_ECTSI) HSP 1 Score: 157 bits (396), Expect = 9.050e-45 Identity = 88/150 (58.67%), Postives = 104/150 (69.33%), Query Frame = -1
Query: 3 LHCCATVKFVGQPVGDNGDAVRVLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHG-NNNEEIEVDNQRIRHMLARAPADRSW 449
LH A V PV DNGDAVRVLL AGADVN +D+ C TPLHIAVN R S GT+RALLEGG+N+++R ++TPLH+AC ++ VELLLRWGADEKLT+ G TP D I + ++ EE E DNQRIR ML APADRSW
Sbjct: 121 LHYAAVVDG---PVRDNGDAVRVLLGAGADVNETNNNDS-CFTPLHIAVNGRKVSDGTVRALLEGGSNIHARALLDQTPLHIACKHASVTGVELLLRWGADEKLTNNVGKTPADVIRPRRQNDFDDEEEREADNQRIRRMLEHAPADRSW 266
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: A0A6H5JXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF0_9PHAE) HSP 1 Score: 150 bits (379), Expect = 2.250e-42 Identity = 88/149 (59.06%), Postives = 106/149 (71.14%), Query Frame = -1
Query: 3 LHCCATVKFVGQPVGDNGDAVRVLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHGNNNEEIEVDNQRIRHMLARAPADRSW 449
LH A+V VG PV D GDAVRVLL AG DVN T D+ C TPLH+AV+ R+AS GTIRALLEG A+V+SR ++TPLH+AC ++ + VELLLRWGADE+LT+ G P D I A ++EE + DNQRI ML RAPADRSW
Sbjct: 46 LHYAASV--VG-PVHDKGDAVRVLLGAGVDVNVNTTTDS-CFTPLHVAVDGRIASDGTIRALLEG-ADVDSRARHDQTPLHIACKHASVSGVELLLRWGADEQLTNNRGDMPADVIRARQQGDLDDEEHDADNQRICRMLTRAPADRSW 189
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: A0A6H5L7E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E1_9PHAE) HSP 1 Score: 158 bits (399), Expect = 5.050e-42 Identity = 90/148 (60.81%), Postives = 105/148 (70.95%), Query Frame = -1
Query: 6 LHCCATVKFVGQPVGDNGDAVRVLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHGNNNEEIEVDNQRIRHMLARAPADRS 449
LH A++ PV DNGDAVRVLL AGA++NAK T D CDT L++AVNRRMAS GTIRALLEG AN+N+R G ++TPLH+ACS S+A VELLLRWGADEKLT D ++EE+E DNQRIR MLAR PA RS
Sbjct: 727 LHYAASIDG---PVHDNGDAVRVLLRAGANINAKGTKDP-CDTSLYLAVNRRMASDGTIRALLEGRANINARTGGDQTPLHVACSRSSAVGVELLLRWGADEKLTTNDDL--------------DDEELEADNQRIRRMLARDPAARS 856
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: A0A6H5JZY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY3_9PHAE) HSP 1 Score: 145 bits (365), Expect = 9.880e-40 Identity = 76/127 (59.84%), Postives = 96/127 (75.59%), Query Frame = -1
Query: 3 VLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHGNNNEEIEVDNQRIRHMLARAPADRSW 383
V+ G + +AT D C TPLH+AV+RR+ASIGT RA+LE GANVN+R+ + TPLH+ACSWS+ A VELLL WGADEKLT ++ +P D IG G+N++EI+ D+QRIR MLARAPADRSW
Sbjct: 149 VIEGPGPGQDDQATGD-RCYTPLHVAVDRRIASIGTTRAVLERGANVNARNDNDLTPLHVACSWSSLAVVELLLLWGADEKLTGDNRVSPADIIGVSLLDGSNSQEIQADHQRIRQMLARAPADRSW 274
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: D8LTL5_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL5_ECTSI) HSP 1 Score: 145 bits (367), Expect = 1.740e-39 Identity = 77/122 (63.11%), Postives = 95/122 (77.87%), Query Frame = -1
Query: 3 GADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHGNNNEEIEVDNQRIRHMLARAPADRSW 368
GADV+A+AT ++C TPLH+AV+RR+ASIGTI ALLEGGA+++ D + TPLH AC S+ VELLLR GADE+LT+E+G P D +GA + +EEIEVDNQRIR MLARAPADRSW
Sbjct: 174 GADVDAEATG-SDCSTPLHVAVDRRVASIGTIGALLEGGADIHVFDEIDDTPLHRACKRSSVTGVELLLRRGADEELTNEEGDAPADIVGASPSNATVDEEIEVDNQRIRRMLARAPADRSW 294
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI) HSP 1 Score: 147 bits (370), Expect = 5.160e-39 Identity = 80/135 (59.26%), Postives = 98/135 (72.59%), Query Frame = -1
Query: 3 DNGDAVRVLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHGN-NNEEIEVDNQRIRHMLARAPADRSW 404
DNG VR+LLEAG VNA+ D TPLH AV RR+ASI T ALLEGGAN N+ TPLH+AC SN AAVELLLRWGADE ++++G P D IG ++D G+ N+E+++ D++RIR MLARAPADRSW
Sbjct: 291 DNGAVVRLLLEAGGGVNAETGRDFLRWTPLHFAVERRIASIDTTLALLEGGANTNAHGDHSGTPLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIG-VYDRGDVNDEDVKADHKRIRRMLARAPADRSW 424 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12131.1661.1 >prot_E-fasciculatus_F_contig12131.1661.1 ID=prot_E-fasciculatus_F_contig12131.1661.1|Name=mRNA_E-fasciculatus_F_contig12131.1661.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=138bp MANALVVDLDFFVVVTVIVHRSYLISRGGSVFVRELLICTPAQQELHSRCback to top mRNA from alignment at E-fasciculatus_F_contig12131:4..452+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12131.1661.1 ID=mRNA_E-fasciculatus_F_contig12131.1661.1|Name=mRNA_E-fasciculatus_F_contig12131.1661.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=449bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12131:4..452+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12131:4..452+ >mRNA_E-fasciculatus_F_contig12131.1661.1 ID=mRNA_E-fasciculatus_F_contig12131.1661.1|Name=mRNA_E-fasciculatus_F_contig12131.1661.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=828bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12131:4..452+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |