mRNA_E-fasciculatus_F_contig12131.1661.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12131.1661.1
Unique NamemRNA_E-fasciculatus_F_contig12131.1661.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.580e-55
Identity = 99/161 (61.49%), Postives = 112/161 (69.57%), Query Frame = -1
Query:    3 LHCCATVKFVGQPVGDNGDAVRVLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPG------------DEIGAMHDHGNNNEEIEVDNQRIRHMLARAPADRSW 449
            LHCC  V  + +PV DNGD VRVLLEAGADV+AK T D NC TPLH AVNRR+A IG IRALLEGGANVN+RD F++TPLH+AC+ S+   VE LL WGADEKLTD DG TP             D   A  ++   +E IE D  RIR MLARAPADRSW
Sbjct:   23 LHCC--VCDINEPVLDNGDTVRVLLEAGADVDAKTTGDGNCATPLHYAVNRRIAPIGAIRALLEGGANVNARDVFDQTPLHVACARSSVNGVEFLLHWGADEKLTDLDGETPAGAIVDSEEETPPDVTDAPGENRGKDEAIEADQHRIRQMLARAPADRSW 181          
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 1.400e-49
Identity = 94/149 (63.09%), Postives = 112/149 (75.17%), Query Frame = -1
Query:    3 LHCCATVKFVGQPVGDNGDAVRVLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHGNNNEEIEVDNQRIRHMLARAPADRSW 449
            LH  A++     PV DNGDAVRVLL AGADV+AK T D  CDT L++AVNRR+AS GTIRALLEGGAN+N+R G ++TPLH+ACS S+A  VELLLRWGAD+KLT   G TP   + A+     ++EE+E DNQRIR MLAR PA RSW
Sbjct:  244 LHYAASIDG---PVRDNGDAVRVLLRAGADVSAKGTKDP-CDTSLYLAVNRRIASDGTIRALLEGGANINARIGGDQTPLHVACSRSSAVGVELLLRWGADDKLTTNVGQTPAHVVRALQQDDLDDEELEADNQRIRRMLARDPAARSW 388          
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 6.360e-49
Identity = 95/149 (63.76%), Postives = 110/149 (73.83%), Query Frame = -1
Query:    3 LHCCATVKFVGQPVGDNGDAVRVLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHGNNNEEIEVDNQRIRHMLARAPADRSW 449
            LH  A ++  G+   D GDAVRVLL AGADV+AK TDD     PLHIAV  R+ S GTIRALLEGGA+VN RD  +RTPLH AC++S+ AAVELLLRWGADEKLTD+   TP D IG   D G+++ +IE D QRI  MLARAPADRSW
Sbjct:  281 LHHAALIEVHGR---DKGDAVRVLLAAGADVHAKTTDDHLRCAPLHIAVCGRVPSTGTIRALLEGGADVNVRDIEDRTPLHEACTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGTSGDVGSDHGDIEADGQRIHQMLARAPADRSW 426          
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 4.160e-47
Identity = 90/149 (60.40%), Postives = 107/149 (71.81%), Query Frame = -1
Query:    3 LHCCATVKFVGQPVGDNGDAVRVLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHGNNNEEIEVDNQRIRHMLARAPADRSW 449
            LH  A+     + V D GDAVRVLL AGADVN K T+D+ C TPLH+AVNR M S GTI ALLEGGAN+N+R   + TPLH+AC+    + VELLLRWGADEKL + DG TP D +G +  +  ++EE E DNQRI  MLARAPADRSW
Sbjct:  283 LHYVASFD---ETVRDKGDAVRVLLGAGADVNVKGTNDS-CATPLHLAVNRWMTSTGTICALLEGGANINARTAGDDTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEEREADNQRIHRMLARAPADRSW 427          
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: D8LQI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI9_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 9.050e-45
Identity = 88/150 (58.67%), Postives = 104/150 (69.33%), Query Frame = -1
Query:    3 LHCCATVKFVGQPVGDNGDAVRVLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHG-NNNEEIEVDNQRIRHMLARAPADRSW 449
            LH  A V     PV DNGDAVRVLL AGADVN    +D+ C TPLHIAVN R  S GT+RALLEGG+N+++R   ++TPLH+AC  ++   VELLLRWGADEKLT+  G TP D I     +  ++ EE E DNQRIR ML  APADRSW
Sbjct:  121 LHYAAVVDG---PVRDNGDAVRVLLGAGADVNETNNNDS-CFTPLHIAVNGRKVSDGTVRALLEGGSNIHARALLDQTPLHIACKHASVTGVELLLRWGADEKLTNNVGKTPADVIRPRRQNDFDDEEEREADNQRIRRMLEHAPADRSW 266          
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: A0A6H5JXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF0_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 2.250e-42
Identity = 88/149 (59.06%), Postives = 106/149 (71.14%), Query Frame = -1
Query:    3 LHCCATVKFVGQPVGDNGDAVRVLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHGNNNEEIEVDNQRIRHMLARAPADRSW 449
            LH  A+V  VG PV D GDAVRVLL AG DVN   T D+ C TPLH+AV+ R+AS GTIRALLEG A+V+SR   ++TPLH+AC  ++ + VELLLRWGADE+LT+  G  P D I A      ++EE + DNQRI  ML RAPADRSW
Sbjct:   46 LHYAASV--VG-PVHDKGDAVRVLLGAGVDVNVNTTTDS-CFTPLHVAVDGRIASDGTIRALLEG-ADVDSRARHDQTPLHIACKHASVSGVELLLRWGADEQLTNNRGDMPADVIRARQQGDLDDEEHDADNQRICRMLTRAPADRSW 189          
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: A0A6H5L7E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E1_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 5.050e-42
Identity = 90/148 (60.81%), Postives = 105/148 (70.95%), Query Frame = -1
Query:    6 LHCCATVKFVGQPVGDNGDAVRVLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHGNNNEEIEVDNQRIRHMLARAPADRS 449
            LH  A++     PV DNGDAVRVLL AGA++NAK T D  CDT L++AVNRRMAS GTIRALLEG AN+N+R G ++TPLH+ACS S+A  VELLLRWGADEKLT  D                ++EE+E DNQRIR MLAR PA RS
Sbjct:  727 LHYAASIDG---PVHDNGDAVRVLLRAGANINAKGTKDP-CDTSLYLAVNRRMASDGTIRALLEGRANINARTGGDQTPLHVACSRSSAVGVELLLRWGADEKLTTNDDL--------------DDEELEADNQRIRRMLARDPAARS 856          
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: A0A6H5JZY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY3_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 9.880e-40
Identity = 76/127 (59.84%), Postives = 96/127 (75.59%), Query Frame = -1
Query:    3 VLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHGNNNEEIEVDNQRIRHMLARAPADRSW 383
            V+   G   + +AT D  C TPLH+AV+RR+ASIGT RA+LE GANVN+R+  + TPLH+ACSWS+ A VELLL WGADEKLT ++  +P D IG     G+N++EI+ D+QRIR MLARAPADRSW
Sbjct:  149 VIEGPGPGQDDQATGD-RCYTPLHVAVDRRIASIGTTRAVLERGANVNARNDNDLTPLHVACSWSSLAVVELLLLWGADEKLTGDNRVSPADIIGVSLLDGSNSQEIQADHQRIRQMLARAPADRSW 274          
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: D8LTL5_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL5_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.740e-39
Identity = 77/122 (63.11%), Postives = 95/122 (77.87%), Query Frame = -1
Query:    3 GADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHGNNNEEIEVDNQRIRHMLARAPADRSW 368
            GADV+A+AT  ++C TPLH+AV+RR+ASIGTI ALLEGGA+++  D  + TPLH AC  S+   VELLLR GADE+LT+E+G  P D +GA   +   +EEIEVDNQRIR MLARAPADRSW
Sbjct:  174 GADVDAEATG-SDCSTPLHVAVDRRVASIGTIGALLEGGADIHVFDEIDDTPLHRACKRSSVTGVELLLRRGADEELTNEEGDAPADIVGASPSNATVDEEIEVDNQRIRRMLARAPADRSW 294          
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 5.160e-39
Identity = 80/135 (59.26%), Postives = 98/135 (72.59%), Query Frame = -1
Query:    3 DNGDAVRVLLEAGADVNAKATDDANCDTPLHIAVNRRMASIGTIRALLEGGANVNSRDGFERTPLHMACSWSNAAAVELLLRWGADEKLTDEDGTTPGDEIGAMHDHGN-NNEEIEVDNQRIRHMLARAPADRSW 404
            DNG  VR+LLEAG  VNA+   D    TPLH AV RR+ASI T  ALLEGGAN N+      TPLH+AC  SN AAVELLLRWGADE  ++++G  P D IG ++D G+ N+E+++ D++RIR MLARAPADRSW
Sbjct:  291 DNGAVVRLLLEAGGGVNAETGRDFLRWTPLHFAVERRIASIDTTLALLEGGANTNAHGDHSGTPLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIG-VYDRGDVNDEDVKADHKRIRRMLARAPADRSW 424          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12131.1661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6K9_9PHAE1.580e-5561.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L812_9PHAE1.400e-4963.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD22_ECTSI6.360e-4963.76MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
D8LQN0_ECTSI4.160e-4760.40Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D8LQI9_ECTSI9.050e-4558.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXF0_9PHAE2.250e-4259.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7E1_9PHAE5.050e-4260.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZY3_9PHAE9.880e-4059.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTL5_ECTSI1.740e-3963.11MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
D8LB27_ECTSI5.160e-3959.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12131contigE-fasciculatus_F_contig12131:4..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size449
Cds size414
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927723.5779338-UTR-E-fasciculatus_F_contig12131:3..381622927723.5779338-UTR-E-fasciculatus_F_contig12131:3..38Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12131 4..38 +
1695995666.411272-UTR-E-fasciculatus_F_contig12131:3..381695995666.411272-UTR-E-fasciculatus_F_contig12131:3..38Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12131 4..38 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927723.5933805-CDS-E-fasciculatus_F_contig12131:38..4521622927723.5933805-CDS-E-fasciculatus_F_contig12131:38..452Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12131 39..452 +
1695995666.4209657-CDS-E-fasciculatus_F_contig12131:38..4521695995666.4209657-CDS-E-fasciculatus_F_contig12131:38..452Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12131 39..452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12131.1661.1prot_E-fasciculatus_F_contig12131.1661.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12131 39..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12131.1661.1

>prot_E-fasciculatus_F_contig12131.1661.1 ID=prot_E-fasciculatus_F_contig12131.1661.1|Name=mRNA_E-fasciculatus_F_contig12131.1661.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=138bp
MANALVVDLDFFVVVTVIVHRSYLISRGGSVFVRELLICTPAQQELHSRC
IRPRTSHVQWCPLEPIARIDIGPSLQQGTDRADRCHPTINGNMERRVTVC
IVGGLRVNVSPGFQQYADSIAVVANGLSYKLNSSAAV*
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mRNA from alignment at E-fasciculatus_F_contig12131:4..452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12131.1661.1 ID=mRNA_E-fasciculatus_F_contig12131.1661.1|Name=mRNA_E-fasciculatus_F_contig12131.1661.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=449bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12131:4..452+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCCATGACCGATCAGCTGGAGCGCGTGCCAGCATATGGCGAATGCGCTG GTTGTCGACCTCGATTTCTTCGTTGTTGTTACCGTGATCGTGCATCGCTC CTATCTCATCTCCAGGGGTGGTTCCGTCTTCGTCCGTGAGCTTCTCATCT GCACCCCAGCGCAGCAGGAGCTCCACAGCCGCTGCATTCGACCAAGAACA AGCCATGTGCAGTGGTGTCCGCTCGAACCCATCGCGCGAATTGACATTGG CCCCTCCCTCCAACAAGGCACGGATCGTGCCGATCGATGCCATCCGACGA TTAACGGCAATATGGAGAGGCGTGTCACAGTTTGCATCGTCGGTGGCCTT CGCGTTAACGTCAGCCCCGGCTTCCAACAGTACGCGGACAGCATCGCCGT TGTCGCCAACGGGTTGTCCTACAAACTTAACAGTAGCGCAGCAGTGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12131:4..452+

>mRNA_E-fasciculatus_F_contig12131.1661.1 ID=mRNA_E-fasciculatus_F_contig12131.1661.1|Name=mRNA_E-fasciculatus_F_contig12131.1661.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=828bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12131:4..452+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGAATGCGCTGGTTGTCGACCTCGATTTCTTCGTTGTTGTTACCGT
GATCGTGCATCGCTCCTATCTCATCTCCAGGGGTGGTTCCGTCTTCGTCC
GTGAGCTTCTCATCTGCACCCCAGCGCAGCAGGAGCTCCACAGCCGCTGC
ATTCGACCAAGAACAAGCCATGTGCAGTGGTGTCCGCTCGAACCCATCGC
GCGAATTGACATTGGCCCCTCCCTCCAACAAGGCACGGATCGTGCCGATC
GATGCCATCCGACGATTAACGGCAATATGGAGAGGCGTGTCACAGTTTGC
ATCGTCGGTGGCCTTCGCGTTAACGTCAGCCCCGGCTTCCAACAGTACGC
GGACAGCATCGCCGTTGTCGCCAACGGGTTGTCCTACAAACTTAACAGTA
GCGCAGCAGTGTAGATGGCGAATGCGCTGGTTGTCGACCTCGATTTCTTC
GTTGTTGTTACCGTGATCGTGCATCGCTCCTATCTCATCTCCAGGGGTGG
TTCCGTCTTCGTCCGTGAGCTTCTCATCTGCACCCCAGCGCAGCAGGAGC
TCCACAGCCGCTGCATTCGACCAAGAACAAGCCATGTGCAGTGGTGTCCG
CTCGAACCCATCGCGCGAATTGACATTGGCCCCTCCCTCCAACAAGGCAC
GGATCGTGCCGATCGATGCCATCCGACGATTAACGGCAATATGGAGAGGC
GTGTCACAGTTTGCATCGTCGGTGGCCTTCGCGTTAACGTCAGCCCCGGC
TTCCAACAGTACGCGGACAGCATCGCCGTTGTCGCCAACGGGTTGTCCTA
CAAACTTAACAGTAGCGCAGCAGTGTAG
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